Literature DB >> 22572788

Saccharomyces cerevisiae in directed evolution: An efficient tool to improve enzymes.

David Gonzalez-Perez1, Eva Garcia-Ruiz, Miguel Alcalde.   

Abstract

Over the past 20 years, directed evolution has been seen to be the most reliable approach to protein engineering. Emulating the natural selection algorithm, ad hoc enzymes with novel features can be tailor-made for practical purposes through iterative rounds of random mutagenesis, DNA recombination and screening. Of the heterologous hosts used in laboratory evolution experiments, the budding yeast Saccharomyces cerevisiae has become the best choice to express eukaryotic proteins with improved properties. S. cerevisiae not only allows mutant enzymes to be secreted but also, it permits a wide range of genetic manipulations to be employed, ranging from in vivo cloning to the creation of greater molecular diversity, thanks to its efficient DNA recombination apparatus. Here, we summarize some successful examples of the use of the S. cerevisiae machinery to accelerate artificial evolution, complementing the traditional in vitro methods to generate tailor-made enzymes.

Entities:  

Mesh:

Year:  2012        PMID: 22572788      PMCID: PMC3370936          DOI: 10.4161/bbug.19544

Source DB:  PubMed          Journal:  Bioeng Bugs        ISSN: 1949-1018


  39 in total

Review 1.  Foreign gene expression in yeast: a review.

Authors:  M A Romanos; C A Scorer; J J Clare
Journal:  Yeast       Date:  1992-06       Impact factor: 3.239

2.  In vitro evolution of a fungal laccase in high concentrations of organic cosolvents.

Authors:  Miren Zumárraga; Thomas Bulter; Sergey Shleev; Julio Polaina; Arturo Martínez-Arias; Francisco J Plou; Antonio Ballesteros; Miguel Alcalde
Journal:  Chem Biol       Date:  2007-09

3.  Recombination-mediated PCR-directed plasmid construction in vivo in yeast.

Authors:  K R Oldenburg; K T Vo; S Michaelis; C Paddon
Journal:  Nucleic Acids Res       Date:  1997-01-15       Impact factor: 16.971

4.  Engineering platforms for directed evolution of Laccase from Pycnoporus cinnabarinus.

Authors:  S Camarero; I Pardo; A I Cañas; P Molina; E Record; A T Martínez; M J Martínez; M Alcalde
Journal:  Appl Environ Microbiol       Date:  2011-12-30       Impact factor: 4.792

5.  The prepro-peptide of Mucor rennin directs the secretion of human growth hormone by Saccharomyces cerevisiae.

Authors:  R Hiramatsu; T Yamashita; J Aikawa; S Horinouchi; T Beppu
Journal:  Appl Environ Microbiol       Date:  1990-07       Impact factor: 4.792

Review 6.  Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae.

Authors:  F Pâques; J E Haber
Journal:  Microbiol Mol Biol Rev       Date:  1999-06       Impact factor: 11.056

7.  Molecular evolution by staggered extension process (StEP) in vitro recombination.

Authors:  H Zhao; L Giver; Z Shao; J A Affholter; F H Arnold
Journal:  Nat Biotechnol       Date:  1998-03       Impact factor: 54.908

8.  Functional expression of a fungal laccase in Saccharomyces cerevisiae by directed evolution.

Authors:  Thomas Bulter; Miguel Alcalde; Volker Sieber; Peter Meinhold; Christian Schlachtbauer; Frances H Arnold
Journal:  Appl Environ Microbiol       Date:  2003-02       Impact factor: 4.792

9.  Directed evolution of a secretory leader for the improved expression of heterologous proteins and full-length antibodies in Saccharomyces cerevisiae.

Authors:  J Andy Rakestraw; Stephen L Sazinsky; Andrea Piatesi; Eugene Antipov; K Dane Wittrup
Journal:  Biotechnol Bioeng       Date:  2009-08-15       Impact factor: 4.530

10.  DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways.

Authors:  Zengyi Shao; Hua Zhao; Huimin Zhao
Journal:  Nucleic Acids Res       Date:  2008-12-12       Impact factor: 16.971

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  18 in total

Review 1.  Tailoring Proteins to Re-Evolve Nature: A Short Review.

Authors:  Angelica Jimenez-Rosales; Miriam V Flores-Merino
Journal:  Mol Biotechnol       Date:  2018-12       Impact factor: 2.695

2.  Directed evolution of unspecific peroxygenase from Agrocybe aegerita.

Authors:  Patricia Molina-Espeja; Eva Garcia-Ruiz; David Gonzalez-Perez; René Ullrich; Martin Hofrichter; Miguel Alcalde
Journal:  Appl Environ Microbiol       Date:  2014-03-28       Impact factor: 4.792

3.  Focused Directed Evolution of Aryl-Alcohol Oxidase in Saccharomyces cerevisiae by Using Chimeric Signal Peptides.

Authors:  Javier Viña-Gonzalez; David Gonzalez-Perez; Patricia Ferreira; Angel T Martinez; Miguel Alcalde
Journal:  Appl Environ Microbiol       Date:  2015-07-10       Impact factor: 4.792

Review 4.  Learning Strategies in Protein Directed Evolution.

Authors:  Xavier F Cadet; Jean Christophe Gelly; Aster van Noord; Frédéric Cadet; Carlos G Acevedo-Rocha
Journal:  Methods Mol Biol       Date:  2022

5.  Assembly of evolved ligninolytic genes in Saccharomyces cerevisiae.

Authors:  David Gonzalez-Perez; Miguel Alcalde
Journal:  Bioengineered       Date:  2014-05-15       Impact factor: 3.269

6.  Directed Evolution Method in Saccharomyces cerevisiae: Mutant Library Creation and Screening.

Authors:  Javier Viña-Gonzalez; David Gonzalez-Perez; Miguel Alcalde
Journal:  J Vis Exp       Date:  2016-04-01       Impact factor: 1.355

7.  Functional expression of a blood tolerant laccase in Pichia pastoris.

Authors:  Diana M Mate; David Gonzalez-Perez; Roman Kittl; Roland Ludwig; Miguel Alcalde
Journal:  BMC Biotechnol       Date:  2013-04-30       Impact factor: 2.563

8.  Heterologous Expression, Engineering and Characterization of a Novel Laccase of Agrocybe pediades with Promising Properties as Biocatalyst.

Authors:  Pablo Aza; Gonzalo Molpeceres; Francisco Javier Ruiz-Dueñas; Susana Camarero
Journal:  J Fungi (Basel)       Date:  2021-05-04

9.  Engineered ACE2 receptor therapy overcomes mutational escape of SARS-CoV-2.

Authors:  Yusuke Higuchi; Tatsuya Suzuki; Takao Arimori; Nariko Ikemura; Emiko Mihara; Yuhei Kirita; Eriko Ohgitani; Osam Mazda; Daisuke Motooka; Shota Nakamura; Yusuke Sakai; Yumi Itoh; Fuminori Sugihara; Yoshiharu Matsuura; Satoaki Matoba; Toru Okamoto; Junichi Takagi; Atsushi Hoshino
Journal:  Nat Commun       Date:  2021-06-21       Impact factor: 14.919

10.  Semi-rational engineering of cellobiose dehydrogenase for improved hydrogen peroxide production.

Authors:  Christoph Sygmund; Paul Santner; Iris Krondorfer; Clemens K Peterbauer; Miguel Alcalde; Gibson S Nyanhongo; Georg M Guebitz; Roland Ludwig
Journal:  Microb Cell Fact       Date:  2013-04-23       Impact factor: 6.352

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