Literature DB >> 22564363

Staying on message: ensuring fidelity in pre-mRNA splicing.

Daniel R Semlow1, Jonathan P Staley.   

Abstract

The faithful expression of genes requires that cellular machinery select substrates with high specificity at each step in gene expression. High specificity is particularly important at the stage of nuclear pre-mRNA splicing, during which the spliceosome selects splice sites and excises intervening introns. With low specificity, the usage of alternative sites would yield insertions, deletions and frame shifts in mRNA. Recently, biochemical, genetic and genome-wide approaches have significantly advanced our understanding of splicing fidelity. In particular, we have learned that DExD/H-box ATPases play a general role in rejecting and discarding suboptimal substrates and that these factors serve as a paradigm for proofreading NTPases in other systems. Recent advances have also defined fundamental questions for future investigations.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22564363      PMCID: PMC3735133          DOI: 10.1016/j.tibs.2012.04.001

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  88 in total

1.  The mutational spectrum of single base-pair substitutions in mRNA splice junctions of human genes: causes and consequences.

Authors:  M Krawczak; J Reiss; D N Cooper
Journal:  Hum Genet       Date:  1992 Sep-Oct       Impact factor: 4.132

2.  Spliceosome discards intermediates via the DEAH box ATPase Prp43p.

Authors:  Rabiah M Mayas; Hiroshi Maita; Daniel R Semlow; Jonathan P Staley
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-12       Impact factor: 11.205

3.  Invariant U2 snRNA nucleotides form a stem loop to recognize the intron early in splicing.

Authors:  Rhonda Perriman; Manuel Ares
Journal:  Mol Cell       Date:  2010-05-14       Impact factor: 17.970

4.  Four yeast spliceosomal proteins (PRP5, PRP9, PRP11, and PRP21) interact to promote U2 snRNP binding to pre-mRNA.

Authors:  S W Ruby; T H Chang; J Abelson
Journal:  Genes Dev       Date:  1993-10       Impact factor: 11.361

Review 5.  Beat the clock: paradigms for NTPases in the maintenance of biological fidelity.

Authors:  S M Burgess; C Guthrie
Journal:  Trends Biochem Sci       Date:  1993-10       Impact factor: 13.807

6.  Prp43p contains a processive helicase structural architecture with a specific regulatory domain.

Authors:  Hélène Walbott; Saïda Mouffok; Régine Capeyrou; Simon Lebaron; Odile Humbert; Herman van Tilbeurgh; Yves Henry; Nicolas Leulliot
Journal:  EMBO J       Date:  2010-05-28       Impact factor: 11.598

7.  Site-directed mutagenesis of Thermus thermophilus elongation factor Tu. Replacement of His85, Asp81 and Arg300.

Authors:  W Zeidler; C Egle; S Ribeiro; A Wagner; V Katunin; R Kreutzer; M Rodnina; W Wintermeyer; M Sprinzl
Journal:  Eur J Biochem       Date:  1995-05-01

8.  A mechanism to enhance mRNA splicing fidelity: the RNA-dependent ATPase Prp16 governs usage of a discard pathway for aberrant lariat intermediates.

Authors:  S M Burgess; C Guthrie
Journal:  Cell       Date:  1993-07-02       Impact factor: 41.582

9.  Stabilization and ribosome association of unspliced pre-mRNAs in a yeast upf1- mutant.

Authors:  F He; S W Peltz; J L Donahue; M Rosbash; A Jacobson
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-01       Impact factor: 11.205

10.  A conformational rearrangement in the spliceosome is dependent on PRP16 and ATP hydrolysis.

Authors:  B Schwer; C Guthrie
Journal:  EMBO J       Date:  1992-12       Impact factor: 11.598

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  57 in total

Review 1.  Splicing fidelity: DEAD/H-box ATPases as molecular clocks.

Authors:  Prakash Koodathingal; Jonathan P Staley
Journal:  RNA Biol       Date:  2013-06-03       Impact factor: 4.652

2.  Spliceosomal DEAH-Box ATPases Remodel Pre-mRNA to Activate Alternative Splice Sites.

Authors:  Daniel R Semlow; Mario R Blanco; Nils G Walter; Jonathan P Staley
Journal:  Cell       Date:  2016-02-25       Impact factor: 41.582

Review 3.  smFRET studies of the 'encounter' complexes and subsequent intermediate states that regulate the selectivity of ligand binding.

Authors:  Colin D Kinz-Thompson; Ruben L Gonzalez
Journal:  FEBS Lett       Date:  2014-07-24       Impact factor: 4.124

4.  The RNA helicase Aquarius exhibits structural adaptations mediating its recruitment to spliceosomes.

Authors:  Inessa De; Sergey Bessonov; Romina Hofele; Karine dos Santos; Cindy L Will; Henning Urlaub; Reinhard Lührmann; Vladimir Pena
Journal:  Nat Struct Mol Biol       Date:  2015-01-19       Impact factor: 15.369

5.  An Allosteric Network for Spliceosome Activation Revealed by High-Throughput Suppressor Analysis in Saccharomyces cerevisiae.

Authors:  David A Brow
Journal:  Genetics       Date:  2019-03-21       Impact factor: 4.562

Review 6.  Functions and regulation of the Brr2 RNA helicase during splicing.

Authors:  Eva Absmeier; Karine F Santos; Markus C Wahl
Journal:  Cell Cycle       Date:  2016-10-28       Impact factor: 4.534

Review 7.  RNA helicases in splicing.

Authors:  Olivier Cordin; Jean D Beggs
Journal:  RNA Biol       Date:  2012-12-10       Impact factor: 4.652

8.  The Evolutionarily-conserved Polyadenosine RNA Binding Protein, Nab2, Cooperates with Splicing Machinery to Regulate the Fate of pre-mRNA.

Authors:  Sharon Soucek; Yi Zeng; Deepti L Bellur; Megan Bergkessel; Kevin J Morris; Qiudong Deng; Duc Duong; Nicholas T Seyfried; Christine Guthrie; Jonathan P Staley; Milo B Fasken; Anita H Corbett
Journal:  Mol Cell Biol       Date:  2016-08-15       Impact factor: 4.272

Review 9.  Lights, camera, action! Capturing the spliceosome and pre-mRNA splicing with single-molecule fluorescence microscopy.

Authors:  Alexander C DeHaven; Ian S Norden; Aaron A Hoskins
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-05-20       Impact factor: 9.957

10.  Using yeast genetics to study splicing mechanisms.

Authors:  Munshi Azad Hossain; Tracy L Johnson
Journal:  Methods Mol Biol       Date:  2014
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