Literature DB >> 24549672

Using yeast genetics to study splicing mechanisms.

Munshi Azad Hossain1, Tracy L Johnson.   

Abstract

Pre-mRNA splicing is a critical step in eukaryotic gene expression, which involves removal of noncoding intron sequences from pre-mRNA and ligation of the remaining exon sequences to make a mature message. Splicing is carried out by a large ribonucleoprotein complex called the spliceosome. Since the first description of the pre-mRNA splicing reaction in the 1970s, elegant genetic and biochemical studies have revealed that the enzyme that catalyzes the reaction, the spliceosome, is an exquisitely dynamic macromolecular machine, and its RNA and protein components undergo highly ordered, tightly coordinated rearrangements in order to carry out intron recognition and splicing catalysis. Studies using the genetically tractable unicellular eukaryote budding yeast (Saccharomyces cerevisiae) have played an instrumental role in deciphering splicing mechanisms. In this chapter, we discuss how yeast genetics has been used to deepen our understanding of the mechanism of splicing and explore the potential for future mechanistic insights using S. cerevisiae as an experimental tool.

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Year:  2014        PMID: 24549672      PMCID: PMC4102252          DOI: 10.1007/978-1-62703-980-2_21

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  42 in total

1.  Global mapping of the yeast genetic interaction network.

Authors:  Amy Hin Yan Tong; Guillaume Lesage; Gary D Bader; Huiming Ding; Hong Xu; Xiaofeng Xin; James Young; Gabriel F Berriz; Renee L Brost; Michael Chang; YiQun Chen; Xin Cheng; Gordon Chua; Helena Friesen; Debra S Goldberg; Jennifer Haynes; Christine Humphries; Grace He; Shamiza Hussein; Lizhu Ke; Nevan Krogan; Zhijian Li; Joshua N Levinson; Hong Lu; Patrice Ménard; Christella Munyana; Ainslie B Parsons; Owen Ryan; Raffi Tonikian; Tania Roberts; Anne-Marie Sdicu; Jesse Shapiro; Bilal Sheikh; Bernhard Suter; Sharyl L Wong; Lan V Zhang; Hongwei Zhu; Christopher G Burd; Sean Munro; Chris Sander; Jasper Rine; Jack Greenblatt; Matthias Peter; Anthony Bretscher; Graham Bell; Frederick P Roth; Grant W Brown; Brenda Andrews; Howard Bussey; Charles Boone
Journal:  Science       Date:  2004-02-06       Impact factor: 47.728

2.  Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile.

Authors:  Maya Schuldiner; Sean R Collins; Natalie J Thompson; Vladimir Denic; Arunashree Bhamidipati; Thanuja Punna; Jan Ihmels; Brenda Andrews; Charles Boone; Jack F Greenblatt; Jonathan S Weissman; Nevan J Krogan
Journal:  Cell       Date:  2005-11-04       Impact factor: 41.582

Review 3.  The spliceosome: design principles of a dynamic RNP machine.

Authors:  Markus C Wahl; Cindy L Will; Reinhard Lührmann
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

4.  The cap binding complex influences H2B ubiquitination by facilitating splicing of the SUS1 pre-mRNA.

Authors:  Munshi Azad Hossain; Julia M Claggett; Tiffany Nguyen; Tracy L Johnson
Journal:  RNA       Date:  2009-06-26       Impact factor: 4.942

5.  Identification of ten genes that control ribosome formation in yeast.

Authors:  L H Hartwell; C S McLaughlin; J R Warner
Journal:  Mol Gen Genet       Date:  1970

6.  A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing.

Authors:  Gwendolyn M Wilmes; Megan Bergkessel; Sourav Bandyopadhyay; Michael Shales; Hannes Braberg; Gerard Cagney; Sean R Collins; Gregg B Whitworth; Tracy L Kress; Jonathan S Weissman; Trey Ideker; Christine Guthrie; Nevan J Krogan
Journal:  Mol Cell       Date:  2008-12-05       Impact factor: 17.970

7.  A single SR-like protein, Npl3, promotes pre-mRNA splicing in budding yeast.

Authors:  Tracy L Kress; Nevan J Krogan; Christine Guthrie
Journal:  Mol Cell       Date:  2008-12-05       Impact factor: 17.970

8.  Macromolecule synthesis in temperature-sensitive mutants of yeast.

Authors:  L H Hartwell
Journal:  J Bacteriol       Date:  1967-05       Impact factor: 3.490

9.  A comprehensive strategy enabling high-resolution functional analysis of the yeast genome.

Authors:  David K Breslow; Dale M Cameron; Sean R Collins; Maya Schuldiner; Jacob Stewart-Ornstein; Heather W Newman; Sigurd Braun; Hiten D Madhani; Nevan J Krogan; Jonathan S Weissman
Journal:  Nat Methods       Date:  2008-07-11       Impact factor: 28.547

10.  Functional organization of the S. cerevisiae phosphorylation network.

Authors:  Dorothea Fiedler; Hannes Braberg; Monika Mehta; Gal Chechik; Gerard Cagney; Paromita Mukherjee; Andrea C Silva; Michael Shales; Sean R Collins; Sake van Wageningen; Patrick Kemmeren; Frank C P Holstege; Jonathan S Weissman; Michael-Christopher Keogh; Daphne Koller; Kevan M Shokat; Nevan J Krogan
Journal:  Cell       Date:  2009-03-06       Impact factor: 41.582

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  5 in total

1.  Dramatically reduced spliceosome in Cyanidioschyzon merolae.

Authors:  Martha R Stark; Elizabeth A Dunn; William S C Dunn; Cameron J Grisdale; Anthony R Daniele; Matthew R G Halstead; Naomi M Fast; Stephen D Rader
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-02       Impact factor: 11.205

Review 2.  The power of fission: yeast as a tool for understanding complex splicing.

Authors:  Benjamin Jung Fair; Jeffrey A Pleiss
Journal:  Curr Genet       Date:  2016-09-14       Impact factor: 3.886

Review 3.  Pre-mRNA Processing Factors and Retinitis Pigmentosa: RNA Splicing and Beyond.

Authors:  Chunbo Yang; Maria Georgiou; Robert Atkinson; Joseph Collin; Jumana Al-Aama; Sushma Nagaraja-Grellscheid; Colin Johnson; Robin Ali; Lyle Armstrong; Sina Mozaffari-Jovin; Majlinda Lako
Journal:  Front Cell Dev Biol       Date:  2021-07-28

Review 4.  Circular RNAs as Therapeutic Agents and Targets.

Authors:  Lesca M Holdt; Alexander Kohlmaier; Daniel Teupser
Journal:  Front Physiol       Date:  2018-10-09       Impact factor: 4.566

5.  Identification of a novel gene required for competitive growth at high temperature in the thermotolerant yeast Kluyveromyces marxianus.

Authors:  Noemi Montini; Tyler W Doughty; Iván Domenzain; Darren A Fenton; Pavel V Baranov; Ronan Harrington; Jens Nielsen; Verena Siewers; John P Morrissey
Journal:  Microbiology (Reading)       Date:  2022-03       Impact factor: 2.956

  5 in total

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