Literature DB >> 22563915

Outer-sphere contributions to the electronic structure of type zero copper proteins.

Kyle M Lancaster1, María-Eugenia Zaballa, Stephen Sproules, Mahesh Sundararajan, Serena DeBeer, John H Richards, Alejandro J Vila, Frank Neese, Harry B Gray.   

Abstract

Bioinorganic canon states that active-site thiolate coordination promotes rapid electron transfer (ET) to and from type 1 copper proteins. In recent work, we have found that copper ET sites in proteins also can be constructed without thiolate ligation (called "type zero" sites). Here we report multifrequency electron paramagnetic resonance (EPR), magnetic circular dichroism (MCD), and nuclear magnetic resonance (NMR) spectroscopic data together with density functional theory (DFT) and spectroscopy-oriented configuration interaction (SORCI) calculations for type zero Pseudomonas aeruginosa azurin variants. Wild-type (type 1) and type zero copper centers experience virtually identical ligand fields. Moreover, O-donor covalency is enhanced in type zero centers relative that in the C112D (type 2) protein. At the same time, N-donor covalency is reduced in a similar fashion to type 1 centers. QM/MM and SORCI calculations show that the electronic structures of type zero and type 2 are intimately linked to the orientation and coordination mode of the carboxylate ligand, which in turn is influenced by outer-sphere hydrogen bonding.

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Year:  2012        PMID: 22563915      PMCID: PMC4794991          DOI: 10.1021/ja302190r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  38 in total

1.  Spectroscopic studies and a structural model for blue copper centers in proteins.

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Journal:  Proc Natl Acad Sci U S A       Date:  1976-05       Impact factor: 11.205

Review 2.  Spectroscopic methods in bioinorganic chemistry: blue to green to red copper sites.

Authors:  Edward I Solomon
Journal:  Inorg Chem       Date:  2006-10-02       Impact factor: 5.165

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Journal:  Proc Natl Acad Sci U S A       Date:  1989-09       Impact factor: 11.205

4.  Electron transfer reactivity of type zero Pseudomonas aeruginosa azurin.

Authors:  Kyle M Lancaster; Ole Farver; Scot Wherland; Edward J Crane; John H Richards; Israel Pecht; Harry B Gray
Journal:  J Am Chem Soc       Date:  2011-03-15       Impact factor: 15.419

5.  The role of hydrogen bonding at the active site of a cupredoxin: the Phe114Pro azurin variant.

Authors:  Sachiko Yanagisawa; Mark J Banfield; Christopher Dennison
Journal:  Biochemistry       Date:  2006-07-25       Impact factor: 3.162

Review 6.  Rack-induced bonding in blue-copper proteins.

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Journal:  Eur J Biochem       Date:  1994-08-01

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Authors:  E I Solomon; M D Lowery
Journal:  Science       Date:  1993-03-12       Impact factor: 47.728

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Authors:  Daniel J Kosman
Journal:  J Biol Inorg Chem       Date:  2009-10-09       Impact factor: 3.358

9.  Accuracy and precision in protein structure analysis: restrained least-squares refinement of the structure of poplar plastocyanin at 1.33 A resolution.

Authors:  J M Guss; H D Bartunik; H C Freeman
Journal:  Acta Crystallogr B       Date:  1992-12-01

10.  O2 reduction to H2O by the multicopper oxidases.

Authors:  Edward I Solomon; Anthony J Augustine; Jungjoo Yoon
Journal:  Dalton Trans       Date:  2008-05-07       Impact factor: 4.390

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  11 in total

1.  Molecular dynamics simulations of apocupredoxins: insights into the formation and stabilization of copper sites under entatic control.

Authors:  Luciano A Abriata; Alejandro J Vila; Matteo Dal Peraro
Journal:  J Biol Inorg Chem       Date:  2014-01-30       Impact factor: 3.358

2.  Spin delocalization over type zero copper.

Authors:  Alexey Potapov; Kyle M Lancaster; John H Richards; Harry B Gray; Daniella Goldfarb
Journal:  Inorg Chem       Date:  2012-03-20       Impact factor: 5.165

Review 3.  Inner- and outer-sphere metal coordination in blue copper proteins.

Authors:  Jeffrey J Warren; Kyle M Lancaster; John H Richards; Harry B Gray
Journal:  J Inorg Biochem       Date:  2012-05-09       Impact factor: 4.155

4.  Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase.

Authors:  Tamara V Tikhonova; Dimitry Y Sorokin; Wilfred R Hagen; Maria G Khrenova; Gerard Muyzer; Tatiana V Rakitina; Ivan G Shabalin; Anton A Trofimov; Stanislav I Tsallagov; Vladimir O Popov
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-24       Impact factor: 11.205

5.  Accurate Quantum Mechanical/Molecular Mechanical Calculations of Reduction Potentials in Azurin Variants.

Authors:  Lin Shen; Xiancheng Zeng; Hao Hu; Xiangqian Hu; Weitao Yang
Journal:  J Chem Theory Comput       Date:  2018-08-10       Impact factor: 6.006

6.  Modular Artificial Cupredoxins.

Authors:  Samuel I Mann; Tillmann Heinisch; Andrew C Weitz; Michael P Hendrich; Thomas R Ward; A S Borovik
Journal:  J Am Chem Soc       Date:  2016-07-14       Impact factor: 15.419

7.  Clarifying the Copper Coordination Environment in a de Novo Designed Red Copper Protein.

Authors:  Karl J Koebke; Leela Ruckthong; Jennifer L Meagher; Emilie Mathieu; Jill Harland; Aniruddha Deb; Nicolai Lehnert; Clotilde Policar; Cédric Tard; James E Penner-Hahn; Jeanne A Stuckey; Vincent L Pecoraro
Journal:  Inorg Chem       Date:  2018-09-18       Impact factor: 5.165

8.  Reversible S-nitrosylation in an engineered azurin.

Authors:  Shiliang Tian; Jing Liu; Ryan E Cowley; Parisa Hosseinzadeh; Nicholas M Marshall; Yang Yu; Howard Robinson; Mark J Nilges; Ninian J Blackburn; Edward I Solomon; Yi Lu
Journal:  Nat Chem       Date:  2016-04-25       Impact factor: 24.427

9.  Engineering a bifunctional copper site in the cupredoxin fold by loop-directed mutagenesis.

Authors:  Andrés Espinoza-Cara; Ulises Zitare; Damián Alvarez-Paggi; Sebastián Klinke; Lisandro H Otero; Daniel H Murgida; Alejandro J Vila
Journal:  Chem Sci       Date:  2018-06-28       Impact factor: 9.825

10.  Converged Structural and Spectroscopic Properties for Refined QM/MM Models of Azurin.

Authors:  Christine E Schulz; Maurice van Gastel; Dimitrios A Pantazis; Frank Neese
Journal:  Inorg Chem       Date:  2021-05-03       Impact factor: 5.165

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