Literature DB >> 32094184

Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase.

Tamara V Tikhonova1, Dimitry Y Sorokin1,2, Wilfred R Hagen2, Maria G Khrenova1,3, Gerard Muyzer4, Tatiana V Rakitina5,6, Ivan G Shabalin7, Anton A Trofimov8, Stanislav I Tsallagov1, Vladimir O Popov9,6.   

Abstract

Biocatalytic copper centers are generally involved in the activation and reduction of dioxygen, with only few exceptions known. Here we report the discovery and characterization of a previously undescribed copper center that forms the active site of a copper-containing enzyme thiocyanate dehydrogenase (suggested EC 1.8.2.7) that was purified from the haloalkaliphilic sulfur-oxidizing bacterium of the genus Thioalkalivibrio ubiquitous in saline alkaline soda lakes. The copper cluster is formed by three copper ions located at the corners of a near-isosceles triangle and facilitates a direct thiocyanate conversion into cyanate, elemental sulfur, and two reducing equivalents without involvement of molecular oxygen. A molecular mechanism of catalysis is suggested based on high-resolution three-dimensional structures, electron paramagnetic resonance (EPR) spectroscopy, quantum mechanics/molecular mechanics (QM/MM) simulations, kinetic studies, and the results of site-directed mutagenesis.

Entities:  

Keywords:  EPR; copper centers; crystal structure; molecular mechanism; thiocyanate dehydrogenase

Year:  2020        PMID: 32094184      PMCID: PMC7071890          DOI: 10.1073/pnas.1922133117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

2.  Atomic resolution structures of resting-state, substrate- and product-complexed Cu-nitrite reductase provide insight into catalytic mechanism.

Authors:  Svetlana V Antonyuk; Richard W Strange; Gary Sawers; Robert R Eady; S Samar Hasnain
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-10       Impact factor: 11.205

3.  Inference of macromolecular assemblies from crystalline state.

Authors:  Evgeny Krissinel; Kim Henrick
Journal:  J Mol Biol       Date:  2007-05-13       Impact factor: 5.469

Review 4.  Copper active sites in biology.

Authors:  Edward I Solomon; David E Heppner; Esther M Johnston; Jake W Ginsbach; Jordi Cirera; Munzarin Qayyum; Matthew T Kieber-Emmons; Christian H Kjaergaard; Ryan G Hadt; Li Tian
Journal:  Chem Rev       Date:  2014-03-03       Impact factor: 60.622

5.  Oxidation of methane by a biological dicopper centre.

Authors:  Ramakrishnan Balasubramanian; Stephen M Smith; Swati Rawat; Liliya A Yatsunyk; Timothy L Stemmler; Amy C Rosenzweig
Journal:  Nature       Date:  2010-04-21       Impact factor: 49.962

6.  Structural insights into electron transfer in caa3-type cytochrome oxidase.

Authors:  Joseph A Lyons; David Aragão; Orla Slattery; Andrei V Pisliakov; Tewfik Soulimane; Martin Caffrey
Journal:  Nature       Date:  2012-07-26       Impact factor: 49.962

7.  Copper is required for oncogenic BRAF signalling and tumorigenesis.

Authors:  Donita C Brady; Matthew S Crowe; Michelle L Turski; G Aaron Hobbs; Xiaojie Yao; Apirat Chaikuad; Stefan Knapp; Kunhong Xiao; Sharon L Campbell; Dennis J Thiele; Christopher M Counter
Journal:  Nature       Date:  2014-04-09       Impact factor: 49.962

8.  Diversity and Distribution of Sulfur Oxidation-Related Genes in Thioalkalivibrio, a Genus of Chemolithoautotrophic and Haloalkaliphilic Sulfur-Oxidizing Bacteria.

Authors:  Tom Berben; Lex Overmars; Dimitry Y Sorokin; Gerard Muyzer
Journal:  Front Microbiol       Date:  2019-02-14       Impact factor: 5.640

9.  Structures of protein-protein complexes involved in electron transfer.

Authors:  Svetlana V Antonyuk; Cong Han; Robert R Eady; S Samar Hasnain
Journal:  Nature       Date:  2013-03-27       Impact factor: 49.962

10.  A four-helix bundle stores copper for methane oxidation.

Authors:  Nicolas Vita; Semeli Platsaki; Arnaud Baslé; Stephen J Allen; Neil G Paterson; Andrew T Crombie; J Colin Murrell; Kevin J Waldron; Christopher Dennison
Journal:  Nature       Date:  2015-08-26       Impact factor: 49.962

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  3 in total

1.  The effect of heavy metals on thiocyanate biodegradation by an autotrophic microbial consortium enriched from mine tailings.

Authors:  Farhad Shafiei; Mathew P Watts; Lukas Pajank; John W Moreau
Journal:  Appl Microbiol Biotechnol       Date:  2020-12-02       Impact factor: 4.813

2.  Endpoint Recombinase Polymerase Amplification (RPA) Assay for Enumeration of Thiocyanate-degrading Bacteria.

Authors:  Mamoru Oshiki; Toshikazu Fukushima; Shuichi Kawano; Junichi Nakagawa
Journal:  Microbes Environ       Date:  2022       Impact factor: 2.912

3.  Unusual Cytochrome c552 from Thioalkalivibrio paradoxus: Solution NMR Structure and Interaction with Thiocyanate Dehydrogenase.

Authors:  Vladimir V Britikov; Eduard V Bocharov; Elena V Britikova; Natalia I Dergousova; Olga G Kulikova; Anastasia Y Solovieva; Nikolai S Shipkov; Larisa A Varfolomeeva; Tamara V Tikhonova; Vladimir I Timofeev; Eleonora V Shtykova; Dmitry A Altukhov; Sergey A Usanov; Alexander S Arseniev; Tatiana V Rakitina; Vladimir O Popov
Journal:  Int J Mol Sci       Date:  2022-09-01       Impact factor: 6.208

  3 in total

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