Literature DB >> 22549287

Translational bioinformatics: linking the molecular world to the clinical world.

R B Altman1.   

Abstract

Translational bioinformatics represents the union of translational medicine and bioinformatics. Translational medicine moves basic biological discoveries from the research bench into the patient-care setting and uses clinical observations to inform basic biology. It focuses on patient care, including the creation of new diagnostics, prognostics, prevention strategies, and therapies based on biological discoveries. Bioinformatics involves algorithms to represent, store, and analyze basic biological data, including DNA sequence, RNA expression, and protein and small-molecule abundance within cells. Translational bioinformatics spans these two fields; it involves the development of algorithms to analyze basic molecular and cellular data with an explicit goal of affecting clinical care.

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Mesh:

Year:  2012        PMID: 22549287      PMCID: PMC4154360          DOI: 10.1038/clpt.2012.49

Source DB:  PubMed          Journal:  Clin Pharmacol Ther        ISSN: 0009-9236            Impact factor:   6.875


  44 in total

Review 1.  Toward a complete in silico, multi-layered embryonic stem cell regulatory network.

Authors:  Huilei Xu; Christoph Schaniel; Ihor R Lemischka; Avi Ma'ayan
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010 Nov-Dec

2.  The human disease network.

Authors:  Kwang-Il Goh; Michael E Cusick; David Valle; Barton Childs; Marc Vidal; Albert-László Barabási
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3.  Geographic dependence, surveillance, and origins of the 2009 influenza A (H1N1) virus.

Authors:  Vladimir Trifonov; Hossein Khiabanian; Raul Rabadan
Journal:  N Engl J Med       Date:  2009-05-27       Impact factor: 91.245

4.  An agenda for personalized medicine.

Authors:  Pauline C Ng; Sarah S Murray; Samuel Levy; J Craig Venter
Journal:  Nature       Date:  2009-10-08       Impact factor: 49.962

5.  Drug-target network.

Authors:  Muhammed A Yildirim; Kwang-Il Goh; Michael E Cusick; Albert-László Barabási; Marc Vidal
Journal:  Nat Biotechnol       Date:  2007-10       Impact factor: 54.908

6.  Web-based, participant-driven studies yield novel genetic associations for common traits.

Authors:  Nicholas Eriksson; J Michael Macpherson; Joyce Y Tung; Lawrence S Hon; Brian Naughton; Serge Saxonov; Linda Avey; Anne Wojcicki; Itsik Pe'er; Joanna Mountain
Journal:  PLoS Genet       Date:  2010-06-24       Impact factor: 5.917

7.  PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations.

Authors:  Joshua C Denny; Marylyn D Ritchie; Melissa A Basford; Jill M Pulley; Lisa Bastarache; Kristin Brown-Gentry; Deede Wang; Dan R Masys; Dan M Roden; Dana C Crawford
Journal:  Bioinformatics       Date:  2010-03-24       Impact factor: 6.937

8.  Drug off-target effects predicted using structural analysis in the context of a metabolic network model.

Authors:  Roger L Chang; Li Xie; Lei Xie; Philip E Bourne; Bernhard Ø Palsson
Journal:  PLoS Comput Biol       Date:  2010-09-23       Impact factor: 4.475

9.  Genetic-linkage mapping of complex hereditary disorders to a whole-genome molecular-interaction network.

Authors:  Ivan Iossifov; Tian Zheng; Miron Baron; T Conrad Gilliam; Andrey Rzhetsky
Journal:  Genome Res       Date:  2008-04-16       Impact factor: 9.043

10.  A side effect resource to capture phenotypic effects of drugs.

Authors:  Michael Kuhn; Monica Campillos; Ivica Letunic; Lars Juhl Jensen; Peer Bork
Journal:  Mol Syst Biol       Date:  2010-01-19       Impact factor: 11.429

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  13 in total

1.  The potential of translational bioinformatics approaches for pharmacology research.

Authors:  Lang Li
Journal:  Br J Clin Pharmacol       Date:  2015-06-01       Impact factor: 4.335

Review 2.  An argument for mechanism-based statistical inference in cancer.

Authors:  Donald Geman; Michael Ochs; Nathan D Price; Cristian Tomasetti; Laurent Younes
Journal:  Hum Genet       Date:  2014-11-09       Impact factor: 4.132

3.  Identifying natural health product and dietary supplement information within adverse event reporting systems.

Authors:  Vivekanand Sharma; Indra Neil Sarkar
Journal:  Pac Symp Biocomput       Date:  2018

4.  Population-dependent Intron Retention and DNA Methylation in Breast Cancer.

Authors:  Dongwook Kim; Manu Shivakumar; Seonggyun Han; Michael S Sinclair; Young-Ji Lee; Yonglan Zheng; Olufunmilayo I Olopade; Dokyoon Kim; Younghee Lee
Journal:  Mol Cancer Res       Date:  2018-01-12       Impact factor: 5.852

5.  Personalized medicine: challenges and opportunities for translational bioinformatics.

Authors:  Casey Lynnette Overby; Peter Tarczy-Hornoch
Journal:  Per Med       Date:  2013-07-01       Impact factor: 2.512

6.  Rethinking biobanking and translational medicine in the Netherlands: how the research process stands to matter for patient care.

Authors:  Conor M W Douglas; Philip Scheltens
Journal:  Eur J Hum Genet       Date:  2014-09-17       Impact factor: 4.246

7.  Development of an undergraduate bioinformatics degree program at a liberal arts college.

Authors:  Paramjeet S Bagga
Journal:  Yale J Biol Med       Date:  2012-09-25

8.  CPT: Pharmacometrics and Systems Pharmacology.

Authors:  Piet H van der Graaf
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2012-09-26

Review 9.  Applications of systems approaches in the study of rheumatic diseases.

Authors:  Ki-Jo Kim; Saseong Lee; Wan-Uk Kim
Journal:  Korean J Intern Med       Date:  2015-02-27       Impact factor: 2.884

10.  Systems approaches evolve clinical pharmacology.

Authors:  S A Waldman; P H van der Graaf; A Terzic
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2013-08-21
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