Literature DB >> 29218888

Identifying natural health product and dietary supplement information within adverse event reporting systems.

Vivekanand Sharma1, Indra Neil Sarkar.   

Abstract

Data on safety and efficacy issues associated with natural health products and dietary supplements (NHP&S) remains largely cloistered within domain specific databases or embedded within general biomedical data sources. A major challenge in leveraging analytic approaches on such data is due to the inefficient ability to retrieve relevant data, which includes a general lack of interoperability among related sources. This study developed a thesaurus of NHP&S ingredient terms that can be used by existing biomedical natural language processing (NLP) tools for extracting information of interest. This process was evaluated relative to intervention name strings sampled from the United States Food and Drug Administration Adverse Event Reporting System (FAERS). A use case was used to demonstrate the potential to utilize FAERS for monitoring NHP&S adverse events. The results from this study provide insights on approaches for identifying additional knowledge from extant repositories of knowledge, and potentially as information that can be included into larger curation efforts.

Entities:  

Mesh:

Year:  2018        PMID: 29218888      PMCID: PMC5725198     

Source DB:  PubMed          Journal:  Pac Symp Biocomput        ISSN: 2335-6928


  18 in total

1.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

2.  Linking biomedical language information and knowledge resources: GO and UMLS.

Authors:  I N Sarkar; M N Cantor; R Gelman; F Hartel; Y A Lussier
Journal:  Pac Symp Biocomput       Date:  2003

3.  The Unified Medical Language System (UMLS): integrating biomedical terminology.

Authors:  Olivier Bodenreider
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

4.  An overview of MetaMap: historical perspective and recent advances.

Authors:  Alan R Aronson; François-Michel Lang
Journal:  J Am Med Inform Assoc       Date:  2010 May-Jun       Impact factor: 4.497

5.  Term Coverage of Dietary Supplements Ingredients in Product Labels.

Authors:  Yefeng Wang; Terrence J Adam; Rui Zhang
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

6.  Emergency Department Visits for Adverse Events Related to Dietary Supplements.

Authors:  Andrew I Geller; Nadine Shehab; Nina J Weidle; Maribeth C Lovegrove; Beverly J Wolpert; Babgaleh B Timbo; Robert P Mozersky; Daniel S Budnitz
Journal:  N Engl J Med       Date:  2015-10-15       Impact factor: 91.245

7.  Evaluation of Herbal and Dietary Supplement Resource Term Coverage.

Authors:  Nivedha Manohar; Terrance J Adam; Serguei V Pakhomov; Genevieve B Melton; Rui Zhang
Journal:  Stud Health Technol Inform       Date:  2015

8.  Bridging islands of information to establish an integrated knowledge base of drugs and health outcomes of interest.

Authors:  Richard D Boyce; Patrick B Ryan; G Niklas Norén; Martijn J Schuemie; Christian Reich; Jon Duke; Nicholas P Tatonetti; Gianluca Trifirò; Rave Harpaz; J Marc Overhage; Abraham G Hartzema; Mark Khayter; Erica A Voss; Christophe G Lambert; Vojtech Huser; Michel Dumontier
Journal:  Drug Saf       Date:  2014-08       Impact factor: 5.606

9.  A curated and standardized adverse drug event resource to accelerate drug safety research.

Authors:  Juan M Banda; Lee Evans; Rami S Vanguri; Nicholas P Tatonetti; Patrick B Ryan; Nigam H Shah
Journal:  Sci Data       Date:  2016-05-10       Impact factor: 6.444

10.  Deep learning with word embeddings improves biomedical named entity recognition.

Authors:  Maryam Habibi; Leon Weber; Mariana Neves; David Luis Wiegandt; Ulf Leser
Journal:  Bioinformatics       Date:  2017-07-15       Impact factor: 6.937

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  4 in total

1.  iDISK: the integrated DIetary Supplements Knowledge base.

Authors:  Rubina F Rizvi; Jake Vasilakes; Terrence J Adam; Genevieve B Melton; Jeffrey R Bishop; Jiang Bian; Cui Tao; Rui Zhang
Journal:  J Am Med Inform Assoc       Date:  2020-04-01       Impact factor: 4.497

2.  Identifying Supplement Use Within Clinical Notes: An Applicationof Natural Language Processing.

Authors:  Vivekanand Sharma; Indra Neil Sarkar
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2018-05-18

3.  Normalizing Dietary Supplement Product Names Using the RxNorm Model.

Authors:  Jake Vasilakes; Yadan Fan; Rubina Rizvi; Anusha Bompelli; Olivier Bodenreider; Rui Zhang
Journal:  Stud Health Technol Inform       Date:  2019-08-21

4.  Identifying Herbal Adverse Events From Spontaneous Reporting Systems Using Taxonomic Name Resolution Approach.

Authors:  Vivekanand Sharma; Luiz Fernando Fracassi Gelin; Indra Neil Sarkar
Journal:  Bioinform Biol Insights       Date:  2020-06-15
  4 in total

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