| Literature DB >> 22540013 |
Wei-Xun Duan1, Rui-Xi Hua, Wei Yi, Li-Jun Shen, Zhen-Xiao Jin, Yu-Hong Zhao, Ding-Hua Yi, Wen-Sheng Chen, Shi-Qiang Yu.
Abstract
BACKGROUND: Numerous studies have investigated association of OGG1 Ser326Cys polymorphism with lung cancer susceptibility; however, the findings are inconsistent. Therefore, we performed a meta-analysis based on 27 publications encompass 9663 cases and 11348 controls to comprehensively evaluate such associations.Entities:
Mesh:
Substances:
Year: 2012 PMID: 22540013 PMCID: PMC3335067 DOI: 10.1371/journal.pone.0035970
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Flow chart of Included Studies.
Characteristics of studies included in the meta-analysis.
| Surname | Year | Country | Ethnicity | Cancer type | Cases/controls | Control source | Genotype method | MAF | H-W |
| Khono | 1998 | Japan | Asian | Mixed | 45/42 | PB | PCR-SSCP | 0.40 | 0.939 |
| Sugimura | 1999 | Japan | Mixed | Mixed | 241/197 | HB | PCR-SSCP | 0.41 | 0.082 |
| Wikman | 2000 | Germany | Caucasian | NSCLC | 105/105 | HB | PCR-RFLP | 0.22 | 0.067 |
| Ito | 2002 | Japan | Asian | ADC | 138/240 | HB | PCR-CTPP | 0.47 | 0.837 |
| Le | 2002 | USA | Mixed | Mixed | 298/405 | PB | PCR-RFLP | 0.35 | 0.350 |
| Sunaga | 2002 | Japan | Asian | ADC | 198/152 | HB | PCR-RFLP | 0.45 | 0.126 |
| Lan | 2004 | China | Asian | Mixed | 118/109 | PB | SNP500 | 0.33 | 0.232 |
| Park | 2004 | USA | Caucasian | Mixed | 179/350 | HB | PCR-RFLP | 0.15 | 0.857 |
| Vogel | 2004 | Denmark | Caucasian | Mixed | 256/269 | PB | real-time PCR | 0.24 | 0.237 |
| Hung | 2005 | European | Caucasian | SCC, ADC | 2155/2163 | HB | TaqMan | 0.20 | 0.215 |
| Khono | 2006 | Japan | Asian | ADC | 1097/394 | HB | pyrosequencing | 0.45 | 0.627 |
| Loft | 2006 | Denmark | Caucasian | Mixed | 251/261 | PB | real-time PCR | 0.24 | 0.200 |
| Sorensen | 2006 | Denmark | Caucasian | Mixed | 431/796 | PB | real-time PCR | 0.22 | 0.258 |
| Matullo | 2006 | European | Caucasian | Mixed | 116/1094 | PB | DHPLC | 0.22 | 0.901 |
| De Ruyck | 2007 | Belgium | Caucasian | Mixed | 110/110 | HB | PCR-RFLP | 0.25 | 0.176 |
| Hatt | 2008 | Denmark | Caucasian | Mixed | 158/164 | PB | TaqMan | 0.25 | 0.536 |
| Karahalil | 2008 | Turkey | Caucasian | Mixed | 165/250 | PB | PCR-RFLP | 0.33 | 0.546 |
| Chang | 2009 | Taiwan | Asian | Mixed | 1096/997 | HB | MassARRAY | 0.60 | 0.741 |
| Miyaishi | 2009 | Japan | Asian | Mixed | 108/121 | HB | PCR-RFLP | 0.45 | 0.271 |
| Okasaka | 2009 | Japan | Asian | Mixed | 515/1030 | PB | TaqMan | 0.49 | 0.070 |
| Chang | 2009 | USA | African | Mixed | 112/296 | PB | Illumina | 0.32 | 0.691 |
| Chang | 2009 | USA | African | Mixed | 254/280 | PB | Illumina | 0.15 | 0.521 |
| Klinchid | 2009 | Thailand | Asian | NSCLC | 76/75 | HB | diASA-AMP | ||
| Janik | 2011 | Poland | Caucasian | NSCLC | 88/79 | HB | PCR-MSSCP | 0.15 | 0.542 |
| Kohno | 2011 | Japan | Asian | SCC | 377/325 | HB | pyrosequencing | 0.45 | 0.704 |
| Li | 2011 | China | Asian | Mixed | 395/443 | HB | PCR-CTPP | 0.62 | 0.329 |
| Qian | 2011 | China | Asian | NSCLC | 581/601 | HB | TaqMan | 0.55 | 0.592 |
| Liang | 2005 | China | Asian | SCC, ADC | 227/227 | HB | diASA-AMP | 0.61 |
|
| Zienolddiny | 2006 | Norway | Caucasian | NSCLC | 326/386 | PB | APEX | 0.35 |
|
| Liu | 2010 | Taiwan | Asian | Mixed | 358/716 | HB | PCR-RFLP | 0.64 |
|
HB, Hospital based; PB, Population based; SCC, Squamous Cell Carcinoma; NSCLC, non-small cell lung cancer; ADC, Adenocarcinoma; PCR-SSCP, PCR-single strand conformation polymorphism; PCR-RFLP, PCR-restriction fragment length polymorphisms; PCR-CTPP, polymerase chain reaction with confronting two-pair primers; diASA-AMP, di-allele-specific amplification with artificially modified primers; DHPLC, denaturing high performance liquid chromatography.
Meta-analysis of the association between OGG1 Ser326Cys polymorphism and lung cancer risk.
| Variables | No. of studies | Homozygous |
| Heterozygous |
| Recessive |
| Dominant |
|
| Ser/Ser vs. Cys/Cys | Ser/Cys vs. Cys/Cys | (Ser/Ser+Ser/Cys) vs. Cys/Cys | Ser/Ser vs. (Ser/Cys+Cys/Cys) | ||||||
| All | 27 | 1.15 (0.98–1.36) | 0.001 | 1.09 (0.95–1.25) | 0.010 | 1.11 (0.97–1.28) | 0.002 | 1.09 (0.98–1.21) | <0.001 |
| Cancer type | |||||||||
| NSCLC | 8 | 1.29 (0.99–1.69) | 0.118 | 1.14 (0.85–1.55) | 0.054 | 1.18 (0.90–1.54) | 0.029 | 1.20 (0.99–1.45) | 0.125 |
| Mixed | 19 | 1.09 (0.89–1.34) | 0.002 | 1.08 (0.92–1.26) | 0.016 | 1.09 (0.92–1.29) | 0.006 | 1.05 (0.93–1.19) | 0.001 |
| Ethnicity | |||||||||
| Caucasian | 11 | 1.12 (0.78–1.62) | 0.014 | 1.08 (0.79–1.47) | 0.107 | 1.11 (0.79–1.55) | 0.028 | 1.05 (0.88–1.25) | 0.001 |
| Asian | 12 | 1.15 (0.92–1.43) | 0.004 | 1.04 (0.89–1.22) | 0.030 | 1.07 (0.91–1.27) | 0.007 | 1.15 (0.98–1.35) | 0.018 |
| African | 2 | 1.00 (0.54–1.84) | 0.802 | 0.98 (0.53–1.82) | 0.423 | 1.01 (0.56–1.83) | 0.653 | 1.12 (0.82–1.52) | 0.279 |
| Mixed | 2 | 1.48 (0.96–2.27) | 0.224 | 1.73 (1.23–2.43) | 0.368 |
| 0.284 | 1.01 (0.79–1.29) | 0.334 |
| Source of controls | |||||||||
| Population | 12 | 1.15 (0.94–1.40) | 0.335 | 1.09 (0.88–1.36) | 0.221 | 1.14 (0.94–1.38) | 0.273 | 1.08 (0.97–1.19) | 0.617 |
| Hospital | 15 | 1.20 (0.94–1.54) | <0.001 | 1.11 (0.92–1.33) | 0.005 | 1.13 (0.93–1.38) | <0.001 | 1.10 (0.93–1.31) | <0.001 |
| Sample size | |||||||||
| <100 | 3 | 4.46 (0.29–68.84) | 0.021 | 3.88 (0.41–36.47) | 0.059 | 4.33 (0.33–57.22) | 0.024 |
| 0.302 |
| 100–500 | 19 | 1.05 (0.83–1.34) | 0.002 | 1.01 (0.82–1.25) | 0.010 | 1.04 (0.84–1.29) | 0.002 | 1.04 (0.91–1.19) | 0.002 |
| >500 | 5 |
| 0.920 | 1.05 (0.81–1.37) | 0.842 |
| 0.953 | 1.12 (0.96–1.31) | 0.046 |
P value of the Q-test for heterogeneity test.
Meta-analysis of the association between OGG1 Ser326Cys polymorphism and lung cancer with definite histological types.
| Variables | No. of studies | Homozygous |
| Heterozygous |
| Recessive |
| Dominant |
|
| Ser/Ser vs. Cys/Cys | Ser/Cys vs. Cys/Cys | (Ser/Ser+Ser/Cys) vs. Cys/Cys | Ser/Ser vs. (Ser/Cys+Cys/Cys) | ||||||
| Histological types | |||||||||
| SCLC | 6 | 0.90 (0.57–1.42) | 0.149 | 0.98 (0.67–1.44) | 0.696 | 0.97 (0.68–1.39) | 0.357 | 1.07 (0.67–1.72) | 0.014 |
| SCC | 7 | 1.14 (0.91–1.42) | 0.306 | 1.16 (0.96–1.41) | 0.163 | 1.14 (0.95–1.38) | 0.143 | 1.04 (0.84–1.28) | 0.101 |
| ADC | 10 |
| 0.233 |
| 0.186 |
| 0.248 | 1.13 (0.93–1.38) | 0.014 |
| LCC | 1 | 3.19 (0.63–16.03) | - | 2.18 (0.41–11.69) | - | 2.85 (0.58–14.03) | - | 1.61 (0.76–3.42) | - |
| NSCLC | 6 |
| 0.065 | 1.11 (0.89–1.39) | 0.155 | 1.18 (0.95–1.46) | 0.086 | 1.25 (0.97–1.61) | 0.147 |
| Mixed | 12 |
| 0.364 | 1.20 (1.00–1.43) | 0.320 |
| 0.307 | 1.08 (0.96–1.22) | 0.371 |
SCLC, Small cell lung cancer; SCC, Squamous Cell Carcinoma; ADC, Adenocarcinoma; LCC, Large cell carcinoma; NSCLC, non-small cell lung cancer.
P value of the Q-test for heterogeneity test.
Figure 2ORs of lung cancer with definite histological types associated with the OGG1 Ser/Ser genotype compared with the Cys/Cys genotype.
For each study, the estimates of OR and its 95% CI are plotted with a box and a horizontal line. ⋄, pooled ORs and its 95% CIs.
OGG1 mRNA expression by the genotypes of SNPs, using data from the HapMapa.
| Population | Genotypes | No. | Mean ± SD |
|
|
|
| CC | 11 | 7.84±0.20 | 0.267 | |
| CG | 23 | 7.94±0.26 | 0.280 | ||
| GG | 11 | 7.96±0.29 | 0.264 | ||
| CG/GG | 34 | 7.95±0.26 | 0.234 | ||
|
| CC | 8 | 7.67±0.18 | 0.125 | |
| CG | 26 | 7.80±0.18 | 0.084 | ||
| GG | 10 | 7.81±0.16 | 0.102 | ||
| CG/GG | 36 | 7.80±0.17 | 0.057 | ||
|
| CC | 55 | 7.87±0.31 | 0.283 | |
| CG | 26 | 7.89±0.28 | 0.781 | ||
| GG | 6 | 7.63±0.18 | 0.082 | ||
| CG/GG | 32 | 7.84±0.28 | 0.689 | ||
|
| CC | 65 | 7.80±0.23 | 0.753 | |
| CG | 20 | 7.77±0.20 | 0.568 | ||
| GG | 3 | 7.83±0.20 | 0.869 | ||
| CG/GG | 23 | 7.78±0.19 | 0.637 | ||
|
| CC | 19 | 7.77±0.21 | 0.106 | |
| CG | 49 | 7.86±0.23 | 0.117 | ||
| GG | 21 | 7.89±0.24 | 0.102 | ||
| CG/GG | 70 | 7.87±0.23 | 0.083 | ||
|
| CC | 139 | 7.82±0.26 | 0.620 | |
| CG | 95 | 7.85±0.24 | 0.420 | ||
| GG | 30 | 7.83±0.24 | 0.883 | ||
| CG/GG | 125 | 7.85±0.24 | 0.468 |
Genotyping data and mRNA expression levels for OGG1 Ser326Cys by genotypes obtained from the HapMap phase II release 23 data from EBV-transformed lymphoblastoid cell lines from 270 individuals. CHB: 45 unrelated Han Chinese in Beijing; JPT: 45 unrelated Japanese in Tokyo; CEU: 90 Utah residents with ancestry from northern and western Europe; YRI: 90 Yoruba in Ibadan, Nigeria.
Two-side Student's t test within the stratum.
P values for the trend test of OGG1 mRNA expression among 3 genotypes for each SNP from a general linear model.
There were missing data because genotyping data were not available.