Literature DB >> 22510765

MicroRNA profiling: approaches and considerations.

Colin C Pritchard1, Heather H Cheng, Muneesh Tewari.   

Abstract

MicroRNAs (miRNAs) are small RNAs that post-transcriptionally regulate the expression of thousands of genes in a broad range of organisms in both normal physiological contexts and in disease contexts. miRNA expression profiling is gaining popularity because miRNAs, as key regulators in gene expression networks, can influence many biological processes and also show promise as biomarkers for disease. Technological advances have spawned a multitude of platforms for miRNA profiling, and an understanding of the strengths and pitfalls of different approaches can aid in their effective use. Here, we review the major considerations for carrying out and interpreting results of miRNA-profiling studies.

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Year:  2012        PMID: 22510765      PMCID: PMC4517822          DOI: 10.1038/nrg3198

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  89 in total

1.  Direct multiplexed measurement of gene expression with color-coded probe pairs.

Authors:  Gary K Geiss; Roger E Bumgarner; Brian Birditt; Timothy Dahl; Naeem Dowidar; Dwayne L Dunaway; H Perry Fell; Sean Ferree; Renee D George; Tammy Grogan; Jeffrey J James; Malini Maysuria; Jeffrey D Mitton; Paola Oliveri; Jennifer L Osborn; Tao Peng; Amber L Ratcliffe; Philippa J Webster; Eric H Davidson; Leroy Hood; Krassen Dimitrov
Journal:  Nat Biotechnol       Date:  2008-02-17       Impact factor: 54.908

2.  mRNA and microRNA quality control for RT-qPCR analysis.

Authors:  C Becker; A Hammerle-Fickinger; I Riedmaier; M W Pfaffl
Journal:  Methods       Date:  2010-01-15       Impact factor: 3.608

3.  Methods for isolation of total RNA to recover miRNAs and other small RNAs from diverse species.

Authors:  Monica Accerbi; Skye A Schmidt; Emanuele De Paoli; Sunhee Park; Dong-Hoon Jeong; Pamela J Green
Journal:  Methods Mol Biol       Date:  2010

4.  Analysis of circulating microRNA biomarkers in plasma and serum using quantitative reverse transcription-PCR (qRT-PCR).

Authors:  Evan M Kroh; Rachael K Parkin; Patrick S Mitchell; Muneesh Tewari
Journal:  Methods       Date:  2010-02-08       Impact factor: 3.608

5.  MicroRNA signatures in tissues and plasma predict development and prognosis of computed tomography detected lung cancer.

Authors:  Mattia Boeri; Carla Verri; Davide Conte; Luca Roz; Piergiorgio Modena; Federica Facchinetti; Elisa Calabrò; Carlo M Croce; Ugo Pastorino; Gabriella Sozzi
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-07       Impact factor: 11.205

6.  Sequencing bias: comparison of different protocols of microRNA library construction.

Authors:  Geng Tian; XuYang Yin; Hong Luo; XiaoHong Xu; Lars Bolund; XiuQing Zhang; Shang-Quang Gan; Ning Li
Journal:  BMC Biotechnol       Date:  2010-09-06       Impact factor: 2.563

7.  Normalization of microRNA expression levels in quantitative RT-PCR assays: identification of suitable reference RNA targets in normal and cancerous human solid tissues.

Authors:  Heidi J Peltier; Gary J Latham
Journal:  RNA       Date:  2008-03-28       Impact factor: 4.942

8.  microRNA-associated progression pathways and potential therapeutic targets identified by integrated mRNA and microRNA expression profiling in breast cancer.

Authors:  Francesca M Buffa; Carme Camps; Laura Winchester; Cameron E Snell; Harriet E Gee; Helen Sheldon; Marian Taylor; Adrian L Harris; Jiannis Ragoussis
Journal:  Cancer Res       Date:  2011-07-07       Impact factor: 12.701

9.  MicroRNA expression aberration as potential peripheral blood biomarkers for schizophrenia.

Authors:  Chi-Yu Lai; Sung-Liang Yu; Ming H Hsieh; Chun-Houh Chen; Hsuan-Yu Chen; Chun-Chiang Wen; Yung-Hsiang Huang; Po-Chang Hsiao; Chuhsing Kate Hsiao; Chih-Min Liu; Pan-Chyr Yang; Hai-Gwo Hwu; Wei J Chen
Journal:  PLoS One       Date:  2011-06-29       Impact factor: 3.240

10.  Differential expression patterns of conserved miRNAs and isomiRs during Atlantic halibut development.

Authors:  Teshome T Bizuayehu; Carlos F C Lanes; Tomasz Furmanek; Bård O Karlsen; Jorge M O Fernandes; Steinar D Johansen; Igor Babiak
Journal:  BMC Genomics       Date:  2012-01-10       Impact factor: 3.969

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  534 in total

Review 1.  Cell-free microRNAs as cancer biomarkers: the odyssey of miRNAs through body fluids.

Authors:  Mohammad Amin Javidi; Amir Hossein Ahmadi; Babak Bakhshinejad; Nazila Nouraee; Sadegh Babashah; Majid Sadeghizadeh
Journal:  Med Oncol       Date:  2014-11-02       Impact factor: 3.064

Review 2.  Genomic integrity and the ageing brain.

Authors:  Hei-man Chow; Karl Herrup
Journal:  Nat Rev Neurosci       Date:  2015-10-14       Impact factor: 34.870

3.  Improved RT-PCR Assay to Quantitate the Pri-, Pre-, and Mature microRNAs with Higher Efficiency and Accuracy.

Authors:  Li Tong; Huihui Xue; Li Xiong; Junhua Xiao; Yuxun Zhou
Journal:  Mol Biotechnol       Date:  2015-10       Impact factor: 2.695

4.  Predictive role of miR-146a rs2910164 (C>G), miR-149 rs2292832 (T>C), miR-196a2 rs11614913 (T>C) and miR-499 rs3746444 (T>C) in the development of hepatocellular carcinoma.

Authors:  Pingping Yan; Miaojuan Xia; Fei Gao; Guanxiu Tang; Hui Zeng; Shuo Yang; Hongmei Zhou; Dan Ding; Lina Gong
Journal:  Int J Clin Exp Pathol       Date:  2015-11-01

Review 5.  Strategies to Modulate MicroRNA Functions for the Treatment of Cancer or Organ Injury.

Authors:  Tae Jin Lee; Xiaoyi Yuan; Keith Kerr; Ji Young Yoo; Dong H Kim; Balveen Kaur; Holger K Eltzschig
Journal:  Pharmacol Rev       Date:  2020-07       Impact factor: 25.468

6.  Diagnostic value of circulating microRNAs for lung cancer: a meta-analysis.

Authors:  Yongchun Shen; Tao Wang; Ting Yang; Qianjing Hu; Chun Wan; Lei Chen; Fuqiang Wen
Journal:  Genet Test Mol Biomarkers       Date:  2013-02-06

7.  Absolute Quantification of Plasma MicroRNA Levels in Cynomolgus Monkeys, Using Quantitative Real-time Reverse Transcription PCR.

Authors:  Takuma Iguchi; Noriyo Niino; Satoshi Tamai; Ken Sakurai; Kazuhiko Mori
Journal:  J Vis Exp       Date:  2018-02-12       Impact factor: 1.355

8.  Multiplexed microRNA Expression Profiling by Combined Asymmetric PCR and Label-Free Detection using Silicon Photonic Sensor Arrays.

Authors:  Richard M Graybill; Maria C Cardenosa-Rubio; Hongwei Yang; Mark D Johnson; Ryan C Bailey
Journal:  Anal Methods       Date:  2018-03-23       Impact factor: 2.896

9.  miR-1298 Inhibits Mutant KRAS-Driven Tumor Growth by Repressing FAK and LAMB3.

Authors:  Ying Zhou; Jason Dang; Kung-Yen Chang; Edwin Yau; Pedro Aza-Blanc; Jorge Moscat; Tariq M Rana
Journal:  Cancer Res       Date:  2016-10-01       Impact factor: 12.701

10.  Strand displacement-triggered G-quadruplex/rolling circle amplification strategy for the ultra-sensitive electrochemical sensing of exosomal microRNAs.

Authors:  Xiaoqi Tang; Yang Wang; Lin Zhou; Wenqing Zhang; Sha Yang; Lianyu Yu; Shuang Zhao; Kai Chang; Ming Chen
Journal:  Mikrochim Acta       Date:  2020-02-15       Impact factor: 5.833

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