Literature DB >> 22038961

Complete genome sequence of the denitrifying and N(2)O-reducing bacterium Pseudogulbenkiania sp. strain NH8B.

Satoshi Ishii1, Kanako Tago, Tomoyasu Nishizawa, Kenshiro Oshima, Masahira Hattori, Keishi Senoo.   

Abstract

Pseudogulbenkiania sp. strain NH8B is a Neisseriales bacterium isolated from an agricultural field. This strain has strong denitrification and N(2)O reduction activities. Here, we report the finished and annotated genome sequence of this organism.

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Year:  2011        PMID： 22038961      PMCID： PMC3209224          DOI： 10.1128/JB.06127-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

1.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

2.  Phylogenetic and functional diversity of denitrifying bacteria isolated from various rice paddy and rice-soybean rotation fields.

Authors:  Kanako Tago; Satoshi Ishii; Tomoyasu Nishizawa; Shigeto Otsuka; Keishi Senoo
Journal:  Microbes Environ       Date:  2011       Impact factor: 2.912

Review 3.  Evolution and classification of the CRISPR-Cas systems.

Authors:  Kira S Makarova; Daniel H Haft; Rodolphe Barrangou; Stan J J Brouns; Emmanuelle Charpentier; Philippe Horvath; Sylvain Moineau; Francisco J M Mojica; Yuri I Wolf; Alexander F Yakunin; John van der Oost; Eugene V Koonin
Journal:  Nat Rev Microbiol       Date:  2011-05-09       Impact factor: 60.633

4.  Automated finishing with autofinish.

Authors:  D Gordon; C Desmarais; P Green
Journal:  Genome Res       Date:  2001-04       Impact factor: 9.043

5.  MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes.

Authors:  Hideki Noguchi; Takeaki Taniguchi; Takehiko Itoh
Journal:  DNA Res       Date:  2008-10-21       Impact factor: 4.458

6.  Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult.

Authors:  Kenshiro Oshima; Hidehiro Toh; Yoshitoshi Ogura; Hiroyuki Sasamoto; Hidetoshi Morita; Sang-Hee Park; Tadasuke Ooka; Sunao Iyoda; Todd D Taylor; Tetsuya Hayashi; Kikuji Itoh; Masahira Hattori
Journal:  DNA Res       Date:  2008-10-17       Impact factor: 4.458

7.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  7 in total
  3 in total

1.  Draft genome sequence of the anaerobic, nitrate-dependent, Fe(II)-oxidizing bacterium Pseudogulbenkiania ferrooxidans strain 2002.

Authors:  Kathryne G Byrne-Bailey; Karrie A Weber; John D Coates
Journal:  J Bacteriol       Date:  2012-05       Impact factor: 3.490

2.  Simultaneous quantification of multiple food- and waterborne pathogens by use of microfluidic quantitative PCR.

Authors:  Satoshi Ishii; Takahiro Segawa; Satoshi Okabe
Journal:  Appl Environ Microbiol       Date:  2013-02-22       Impact factor: 4.792

3.  Denitrification and Nitrate-Dependent Fe(II) Oxidation in Various Pseudogulbenkiania Strains.

Authors:  Satoshi Ishii; Kazuki Joikai; Shigeto Otsuka; Keishi Senoo; Satoshi Okabe
Journal:  Microbes Environ       Date:  2016-07-15       Impact factor: 2.912
  3 in total

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