Literature DB >> 27112937

Direct comparison of elastic incoherent neutron scattering experiments with molecular dynamics simulations of DMPC phase transitions.

Bachir Aoun1, Eric Pellegrini1, Marcus Trapp2,3, Francesca Natali1,4, Laura Cantù5, Paola Brocca5, Yuri Gerelli1, Bruno Demé1, Michael Marek Koza1, Mark Johnson1, Judith Peters6,7.   

Abstract

Neutron scattering techniques have been employed to investigate 1,2-dimyristoyl-sn -glycero-3-phosphocholine (DMPC) membranes in the form of multilamellar vesicles (MLVs) and deposited, stacked multilamellar-bilayers (MLBs), covering transitions from the gel to the liquid phase. Neutron diffraction was used to characterise the samples in terms of transition temperatures, whereas elastic incoherent neutron scattering (EINS) demonstrates that the dynamics on the sub-macromolecular length-scale and pico- to nano-second time-scale are correlated with the structural transitions through a discontinuity in the observed elastic intensities and the derived mean square displacements. Molecular dynamics simulations have been performed in parallel focussing on the length-, time- and temperature-scales of the neutron experiments. They correctly reproduce the structural features of the main gel-liquid phase transition. Particular emphasis is placed on the dynamical amplitudes derived from experiment and simulations. Two methods are used to analyse the experimental data and mean square displacements. They agree within a factor of 2 irrespective of the probed time-scale, i.e. the instrument utilized. Mean square displacements computed from simulations show a comparable level of agreement with the experimental values, albeit, the best match with the two methods varies for the two instruments. Consequently, experiments and simulations together give a consistent picture of the structural and dynamical aspects of the main lipid transition and provide a basis for future, theoretical modelling of dynamics and phase behaviour in membranes. The need for more detailed analytical models is pointed out by the remaining variation of the dynamical amplitudes derived in two different ways from experiments on the one hand and simulations on the other.

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Keywords:  Living systems: Biological Matter

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Year:  2016        PMID: 27112937     DOI: 10.1140/epje/i2016-16048-y

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  37 in total

1.  Communication: consistent picture of lateral subdiffusion in lipid bilayers: molecular dynamics simulation and exact results.

Authors:  Gerald R Kneller; Krzysztof Baczynski; Marta Pasenkiewicz-Gierula
Journal:  J Chem Phys       Date:  2011-10-14       Impact factor: 3.488

2.  Hydration dependent studies of highly aligned multilayer lipid membranes by neutron scattering.

Authors:  Marcus Trapp; Thomas Gutberlet; Fanni Juranyi; Tobias Unruh; Bruno Demé; Moeava Tehei; Judith Peters
Journal:  J Chem Phys       Date:  2010-10-28       Impact factor: 3.488

3.  The antagonistic effect of an inhalation anesthetic and high pressure on the phase diagram of mixed dipalmitoyl-dimyristoylphosphatidylcholine bilayers.

Authors:  J R Trudell; D G Payan; J H Chin; E N Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  1975-01       Impact factor: 11.205

4.  Motional heterogeneity in human acetylcholinesterase revealed by a non-Gaussian model for elastic incoherent neutron scattering.

Authors:  Judith Peters; Gerald R Kneller
Journal:  J Chem Phys       Date:  2013-10-28       Impact factor: 3.488

5.  Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types.

Authors:  Jeffery B Klauda; Richard M Venable; J Alfredo Freites; Joseph W O'Connor; Douglas J Tobias; Carlos Mondragon-Ramirez; Igor Vorobyov; Alexander D MacKerell; Richard W Pastor
Journal:  J Phys Chem B       Date:  2010-06-17       Impact factor: 2.991

6.  Subgel studies of dimyristoylphosphatidylcholine bilayers.

Authors:  Henry H Chang; Ramesh K Bhagat; Rosalie Tran; Phoebe Dea
Journal:  J Phys Chem B       Date:  2006-11-09       Impact factor: 2.991

7.  Temperature and compositional dependence of the structure of hydrated dimyristoyl lecithin.

Authors:  M J Janiak; D M Small; G G Shipley
Journal:  J Biol Chem       Date:  1979-07-10       Impact factor: 5.157

8.  Barotropic phase transitions and pressure-induced interdigitation on bilayer membranes of phospholipids with varying acyl chain lengths.

Authors:  H Ichimori; T Hata; H Matsuki; S Kaneshina
Journal:  Biochim Biophys Acta       Date:  1998-11-11

9.  Structure of gel phase DMPC determined by X-ray diffraction.

Authors:  Stephanie Tristram-Nagle; Yufeng Liu; Justin Legleiter; John F Nagle
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

10.  Thermotropic phase behavior and headgroup interactions of the nonbilayer lipids phosphatidylethanolamine and monogalactosyldiacylglycerol in the dry state.

Authors:  Antoaneta V Popova; Dirk K Hincha
Journal:  BMC Biophys       Date:  2011-05-10       Impact factor: 4.778

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  3 in total

1.  Interdigitation of Lipids Induced by Membrane-Active Proteins.

Authors:  T Devanand; Sankaran Krishnaswamy; Satyavani Vemparala
Journal:  J Membr Biol       Date:  2019-06-11       Impact factor: 1.843

2.  The effect of pH on the dynamics of natural membranes.

Authors:  M Guiral; C Neitzel; M Salvador Castell; N Martinez; M T Giudici-Orticoni; J Peters
Journal:  Eur Phys J E Soft Matter       Date:  2018-02-16       Impact factor: 1.890

3.  Thermodynamics of lipid multi-lamellar vesicles in presence of sterols at high hydrostatic pressure.

Authors:  J Peters; J Marion; F J Becher; M Trapp; T Gutberlet; D J Bicout; T Heimburg
Journal:  Sci Rep       Date:  2017-11-10       Impact factor: 4.379

  3 in total

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