Literature DB >> 22465102

Development of a novel method for simultaneous concentration of viruses and protozoa from a single water sample.

Eiji Haramoto1, Hiroyuki Katayama, Mari Asami, Michihiro Akiba.   

Abstract

A novel method, electronegative membrane-vortex (EMV) method, was developed for simultaneous concentration of viruses and protozoa from a single water sample. Viruses and protozoa in a water sample were mixed with a cation solution and adsorbed on an electronegative membrane. Concentrated virus and protozoa samples were obtained as supernatant and pellet fractions, respectively, by vigorous vortex mixing of the membrane and centrifugation of the eluted material. The highest recovery efficiencies of model microbes from river water and tap water by this EMV method were obtained using a mixed cellulose ester membrane with a pore size of 0.45 μm (Millipore) as the electronegative membrane and MgCl(2) as the cation solution. The recovery was 27.7-86.5% for poliovirus, 25.7-68.3% for coliphage Qβ, 28.0-60.0% for Cryptosporidium oocysts, and 35.0-53.0% for Giardia cysts. The EMV method detected successfully indigenous viruses and protozoa in wastewater and river water samples from the Kofu basin, Japan, showing an overall positive rate of 100% (43/43) for human adenovirus, 79% (34/43) for norovirus GI, 65% (28/43) for norovirus GII, 23% (10/43) for Cryptosporidium oocysts, and 60% (26/43) for Giardia cysts. By direct DNA sequencing, a total of four genotypes (AI, AII, B, and G) of Giardia intestinalis were identified in the water samples, indicating that the river water was contaminated with feces from various mammals, including humans.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22465102     DOI: 10.1016/j.jviromet.2012.03.011

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  13 in total

1.  Quantification and Genotyping of Aichi Virus 1 in Water Samples in the Kathmandu Valley, Nepal.

Authors:  Eiji Haramoto; Masaaki Kitajima
Journal:  Food Environ Virol       Date:  2017-02-09       Impact factor: 2.778

2.  Prevalence and genetic diversity of klassevirus in wastewater in Japan.

Authors:  Eiji Haramoto; Mikie Otagiri
Journal:  Food Environ Virol       Date:  2012-11-22       Impact factor: 2.778

3.  Development of a reverse transcription-quantitative PCR assay for detection of salivirus/klassevirus.

Authors:  Eiji Haramoto; Masaaki Kitajima; Mikie Otagiri
Journal:  Appl Environ Microbiol       Date:  2013-03-29       Impact factor: 4.792

4.  Evaluation of Human- and Animal-Specific Viral Markers and Application of CrAssphage, Pepper Mild Mottle Virus, and Tobacco Mosaic Virus as Potential Fecal Pollution Markers to River Water in Japan.

Authors:  Bikash Malla; Koki Makise; Koki Nakaya; Taizo Mochizuki; Takahiro Yamada; Eiji Haramoto
Journal:  Food Environ Virol       Date:  2019-08-02       Impact factor: 2.778

5.  Occurrence of Human Cosavirus in Wastewater and River Water in Japan.

Authors:  Eiji Haramoto; Mikie Otagiri
Journal:  Food Environ Virol       Date:  2013-08-13       Impact factor: 2.778

6.  Fecal Fingerprints of Enteric Pathogen Contamination in Public Environments of Kisumu, Kenya, Associated with Human Sanitation Conditions and Domestic Animals.

Authors:  Kelly K Baker; Reid Senesac; Daniel Sewell; Ananya Sen Gupta; Oliver Cumming; Jane Mumma
Journal:  Environ Sci Technol       Date:  2018-08-27       Impact factor: 9.028

7.  Quantification of Protozoa and Viruses from Small Water Volumes.

Authors:  J Alfredo Bonilla; Tonya D Bonilla; Amir M Abdelzaher; Troy M Scott; Jerzy Lukasik; Helena M Solo-Gabriele; Carol J Palmer
Journal:  Int J Environ Res Public Health       Date:  2015-06-24       Impact factor: 3.390

8.  Presence of Human Enteric Viruses, Protozoa, and Indicators of Pathogens in the Bagmati River, Nepal.

Authors:  Sarmila Tandukar; Jeevan B Sherchand; Dinesh Bhandari; Samendra P Sherchan; Bikash Malla; Rajani Ghaju Shrestha; Eiji Haramoto
Journal:  Pathogens       Date:  2018-04-06

9.  Next-generation amplicon sequencing identifies genetically diverse human astroviruses, including recombinant strains, in environmental waters.

Authors:  Akihiko Hata; Masaaki Kitajima; Eiji Haramoto; Suntae Lee; Masaru Ihara; Charles P Gerba; Hiroaki Tanaka
Journal:  Sci Rep       Date:  2018-08-07       Impact factor: 4.379

10.  First environmental surveillance for the presence of SARS-CoV-2 RNA in wastewater and river water in Japan.

Authors:  Eiji Haramoto; Bikash Malla; Ocean Thakali; Masaaki Kitajima
Journal:  Sci Total Environ       Date:  2020-06-20       Impact factor: 10.753

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