Literature DB >> 31376023

Evaluation of Human- and Animal-Specific Viral Markers and Application of CrAssphage, Pepper Mild Mottle Virus, and Tobacco Mosaic Virus as Potential Fecal Pollution Markers to River Water in Japan.

Bikash Malla1, Koki Makise2, Koki Nakaya3, Taizo Mochizuki3, Takahiro Yamada4, Eiji Haramoto5.   

Abstract

Five human-specific markers were detected in 59-74% of 27 human fecal-source samples collected in Yamanashi Prefecture, Japan. Similarly, potential human-specific markers, crAssphage, pepper mild mottle virus (PMMoV), and tobacco mosaic virus were detected in 96-100% of samples, with crAssphage showing the maximum concentration of 12.03 log copies/L. However, these markers were detected in 100% (3/3) of pig fecal-source samples, suggesting their applicability as general fecal pollution markers. Microbial source tracking analysis demonstrated that the rivers are contaminated by human and pig fecal sources. CrAssphage showed higher marker concentrations in river water samples than PMMoV, suggesting the preference of crAssphage to PMMoV as a marker of fecal pollution.

Entities:  

Keywords:  CrAssphage; Microbial source tracking; Pepper mild mottle virus; Tobacco mosaic virus

Mesh：

Substances：

Year:  2019        PMID： 31376023     DOI： 10.1007/s12560-019-09398-w

Source DB:  PubMed          Journal:  Food Environ Virol        ISSN： 1867-0334            Impact factor:   2.778


  31 in total

1.  Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR.

Authors:  Tsutomu Kageyama; Shigeyuki Kojima; Michiyo Shinohara; Kazue Uchida; Shuetsu Fukushi; Fuminori B Hoshino; Naokazu Takeda; Kazuhiko Katayama
Journal:  J Clin Microbiol       Date:  2003-04       Impact factor: 5.948

2.  Evaluation of pepper mild mottle virus, human picobirnavirus and Torque teno virus as indicators of fecal contamination in river water.

Authors:  Ibrahim Ahmed Hamza; Lars Jurzik; Klaus Uberla; Michael Wilhelm
Journal:  Water Res       Date:  2010-10-23       Impact factor: 11.236

3.  Quantitative CrAssphage PCR Assays for Human Fecal Pollution Measurement.

Authors:  Elyse Stachler; Catherine Kelty; Mano Sivaganesan; Xiang Li; Kyle Bibby; Orin C Shanks
Journal:  Environ Sci Technol       Date:  2017-07-25       Impact factor: 9.028

Review 4.  A review on recent progress in the detection methods and prevalence of human enteric viruses in water.

Authors:  Eiji Haramoto; Masaaki Kitajima; Akihiko Hata; Jason R Torrey; Yoshifumi Masago; Daisuke Sano; Hiroyuki Katayama
Journal:  Water Res       Date:  2018-02-08       Impact factor: 11.236

5.  Performance Evaluation of Human-Specific Viral Markers and Application of Pepper Mild Mottle Virus and CrAssphage to Environmental Water Samples as Fecal Pollution Markers in the Kathmandu Valley, Nepal.

Authors:  Bikash Malla; Rajani Ghaju Shrestha; Sarmila Tandukar; Jeevan B Sherchand; Eiji Haramoto
Journal:  Food Environ Virol       Date:  2019-05-13       Impact factor: 2.778

6.  Frequent detection of noroviruses and sapoviruses in swine and high genetic diversity of porcine sapovirus in Japan during Fiscal Year 2008.

Authors:  Kazuya Nakamura; Yumiko Saga; Masae Iwai; Mayumi Obara; Eiji Horimoto; Sumiyo Hasegawa; Takeshi Kurata; Hiraku Okumura; Masataka Nagoshi; Takenori Takizawa
Journal:  J Clin Microbiol       Date:  2010-02-17       Impact factor: 5.948

7.  Pepper mild mottle virus as an indicator of fecal pollution.

Authors:  Karyna Rosario; Erin M Symonds; Christopher Sinigalliano; Jill Stewart; Mya Breitbart
Journal:  Appl Environ Microbiol       Date:  2009-09-18       Impact factor: 4.792

8.  Quantification of human polyomaviruses JC Virus and BK Virus by TaqMan quantitative PCR and comparison to other water quality indicators in water and fecal samples.

Authors:  Shannon M McQuaig; Troy M Scott; Jerzy O Lukasik; John H Paul; Valerie J Harwood
Journal:  Appl Environ Microbiol       Date:  2009-04-03       Impact factor: 4.792

9.  RNA viral community in human feces: prevalence of plant pathogenic viruses.

Authors:  Tao Zhang; Mya Breitbart; Wah Heng Lee; Jin-Quan Run; Chia Lin Wei; Shirlena Wee Ling Soh; Martin L Hibberd; Edison T Liu; Forest Rohwer; Yijun Ruan
Journal:  PLoS Biol       Date:  2006-01       Impact factor: 8.029

10.  Performance characteristics of qPCR assays targeting human- and ruminant-associated bacteroidetes for microbial source tracking across sixteen countries on six continents.

Authors:  Georg H Reischer; James E Ebdon; Johanna M Bauer; Nathalie Schuster; Warish Ahmed; Johan Aström; Anicet R Blanch; Günter Blöschl; Denis Byamukama; Tricia Coakley; Christobel Ferguson; Goraw Goshu; Gwangpyo Ko; Ana Maria de Roda Husman; Douglas Mushi; Ramiro Poma; Bandana Pradhan; Veronica Rajal; Margit A Schade; Regina Sommer; Huw Taylor; Erika M Toth; Virgil Vrajmasu; Stefan Wuertz; Robert L Mach; Andreas H Farnleitner
Journal:  Environ Sci Technol       Date:  2013-07-10       Impact factor: 9.028
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  2 in total

1.  CrAssphage and its bacterial host in cat feces.

Authors:  Yanpeng Li; Emilia Gordon; Ryan C Shean; Amanda Idle; Xutao Deng; Alexander L Greninger; Eric Delwart
Journal:  Sci Rep       Date:  2021-01-12       Impact factor: 4.379

2.  Monitoring Human Viral Pathogens Reveals Potential Hazard for Treated Wastewater Discharge or Reuse.

Authors:  Enric Cuevas-Ferrando; Alba Pérez-Cataluña; Irene Falcó; Walter Randazzo; Gloria Sánchez
Journal:  Front Microbiol       Date:  2022-04-08       Impact factor: 6.064
  2 in total

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