Literature DB >> 28185207

Quantification and Genotyping of Aichi Virus 1 in Water Samples in the Kathmandu Valley, Nepal.

Eiji Haramoto1, Masaaki Kitajima2.   

Abstract

Aichi virus 1 genomes were detected by quantitative PCR in groundwater from shallow dug (10/22) and tube wells (1/15), river water (14/14), and sewage (1/1), with the maximum concentration of 4.0 × 109 copies/l. Nucleotide sequencing analysis demonstrated the prevalence of genotype B in the virus positive samples.

Entities:  

Keywords:  Aichi virus 1; Groundwater; Kathmandu Valley; Picornaviridae

Mesh：

Year:  2017        PMID： 28185207     DOI： 10.1007/s12560-017-9283-7

Source DB:  PubMed          Journal:  Food Environ Virol        ISSN： 1867-0334            Impact factor:   2.778


  12 in total

1.  Characterization of microbial communities distributed in the groundwater pumped from deep tube wells in the Kathmandu Valley of Nepal.

Authors:  Yasuhiro Tanaka; Kei Nishida; Takashi Nakamura; Saroj Kumar Chapagain; Daisuke Inoue; Kazunari Sei; Kazuhiro Mori; Yasushi Sakamoto; Futaba Kazama
Journal:  J Water Health       Date:  2012-03       Impact factor: 1.744

2.  Development of a novel method for simultaneous concentration of viruses and protozoa from a single water sample.

Authors:  Eiji Haramoto; Hiroyuki Katayama; Mari Asami; Michihiro Akiba
Journal:  J Virol Methods       Date:  2012-03-20       Impact factor: 2.014

3.  High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage.

Authors:  Terry Fei Fan Ng; Rachel Marine; Chunlin Wang; Peter Simmonds; Beatrix Kapusinszky; Ladaporn Bodhidatta; Bamidele Soji Oderinde; K Eric Wommack; Eric Delwart
Journal:  J Virol       Date:  2012-08-29       Impact factor: 5.103

4.  Development of a reverse transcription-quantitative PCR system for detection and genotyping of aichi viruses in clinical and environmental samples.

Authors:  Masaaki Kitajima; Akihiko Hata; Teruo Yamashita; Eiji Haramoto; Hiroko Minagawa; Hiroyuki Katayama
Journal:  Appl Environ Microbiol       Date:  2013-04-19       Impact factor: 4.792

5.  Prevalence of protozoa, viruses, coliphages and indicator bacteria in groundwater and river water in the Kathmandu Valley, Nepal.

Authors:  Eiji Haramoto; Kaoru Yamada; Kei Nishida
Journal:  Trans R Soc Trop Med Hyg       Date:  2011-11-01       Impact factor: 2.184

Review 6.  Kobuviruses - a comprehensive review.

Authors:  Gábor Reuter; Akos Boros; Péter Pankovics
Journal:  Rev Med Virol       Date:  2011-01       Impact factor: 6.989

7.  Seasonal distribution of enteropathogens detected from diarrheal stool and water samples collected in Kathmandu, Nepal.

Authors:  K Ono; S K Rai; M Chikahira; T Fujimoto; H Shibata; Y Wada; H Tsuji; Y Oda; G Rai; C D Shrestha; K Masuda; H G Shrestha; T Matsumura; H Hotta; T Kawamura; S Uga
Journal:  Southeast Asian J Trop Med Public Health       Date:  2001-09       Impact factor: 0.267

8.  Risk of diarrhoea from shallow groundwater contaminated with enteropathogens in the Kathmandu Valley, Nepal.

Authors:  Sadhana Shrestha; Eiji Haramoto; Rabin Malla; Kei Nishida
Journal:  J Water Health       Date:  2015-03       Impact factor: 1.744

9.  Relative abundance and treatment reduction of viruses during wastewater treatment processes--identification of potential viral indicators.

Authors:  Masaaki Kitajima; Brandon C Iker; Ian L Pepper; Charles P Gerba
Journal:  Sci Total Environ       Date:  2014-05-15       Impact factor: 7.963

Review 10.  Aichi virus 1: environmental occurrence and behavior.

Authors:  Masaaki Kitajima; Charles P Gerba
Journal:  Pathogens       Date:  2015-05-19
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  7 in total

1.  Performance Evaluation of Human-Specific Viral Markers and Application of Pepper Mild Mottle Virus and CrAssphage to Environmental Water Samples as Fecal Pollution Markers in the Kathmandu Valley, Nepal.

Authors:  Bikash Malla; Rajani Ghaju Shrestha; Sarmila Tandukar; Jeevan B Sherchand; Eiji Haramoto
Journal:  Food Environ Virol       Date:  2019-05-13       Impact factor: 2.778

Review 2.  A Comprehensive Review on Human Aichi Virus.

Authors:  Enrique Rivadulla; Jesús L Romalde
Journal:  Virol Sin       Date:  2020-04-27       Impact factor: 4.327

Review 3.  Global public health implications of human exposure to viral contaminated water.

Authors:  Adedayo Ayodeji Lanrewaju; Abimbola Motunrayo Enitan-Folami; Saheed Sabiu; Joshua Nosa Edokpayi; Feroz Mahomed Swalaha
Journal:  Front Microbiol       Date:  2022-08-30       Impact factor: 6.064

4.  Presence of Human Enteric Viruses, Protozoa, and Indicators of Pathogens in the Bagmati River, Nepal.

Authors:  Sarmila Tandukar; Jeevan B Sherchand; Dinesh Bhandari; Samendra P Sherchan; Bikash Malla; Rajani Ghaju Shrestha; Eiji Haramoto
Journal:  Pathogens       Date:  2018-04-06

5.  Development of a Quantitative PCR Assay for Arcobacter spp. and its Application to Environmental Water Samples.

Authors:  Rajani Ghaju Shrestha; Yasuhiro Tanaka; Bikash Malla; Sarmila Tandukar; Dinesh Bhandari; Daisuke Inoue; Kazunari Sei; Jeevan B Sherchand; Eiji Haramoto
Journal:  Microbes Environ       Date:  2018-09-06       Impact factor: 2.912

6.  Next-generation amplicon sequencing identifies genetically diverse human astroviruses, including recombinant strains, in environmental waters.

Authors:  Akihiko Hata; Masaaki Kitajima; Eiji Haramoto; Suntae Lee; Masaru Ihara; Charles P Gerba; Hiroaki Tanaka
Journal:  Sci Rep       Date:  2018-08-07       Impact factor: 4.379

Review 7.  Viral indicators for tracking domestic wastewater contamination in the aquatic environment.

Authors:  Kata Farkas; David I Walker; Evelien M Adriaenssens; James E McDonald; Luke S Hillary; Shelagh K Malham; Davey L Jones
Journal:  Water Res       Date:  2020-05-10       Impact factor: 11.236
  7 in total

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