Literature DB >> 23542627

Development of a reverse transcription-quantitative PCR assay for detection of salivirus/klassevirus.

Eiji Haramoto1, Masaaki Kitajima, Mikie Otagiri.   

Abstract

A broadly reactive and highly sensitive reverse transcription-quantitative PCR assay to detect salivirus/klassevirus was developed. By means of the developed assay, salivirus/klassevirus was detected in 13 (93%) raw sewage, 4 (29%) secondary-treated sewage, and 9 (16%) river water samples, with a maximum concentration of 9.7 × 10(6) copies/liter.

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Year:  2013        PMID： 23542627      PMCID： PMC3648030          DOI： 10.1128/AEM.00132-13

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  19 in total

1.  Development, evaluation, and standardization of a real-time TaqMan reverse transcription-PCR assay for quantification of hepatitis A virus in clinical and shellfish samples.

Authors:  M Isabel Costafreda; Albert Bosch; Rosa M Pintó
Journal:  Appl Environ Microbiol       Date:  2006-06       Impact factor: 4.792

2.  Quantitative detection of sapoviruses in wastewater and river water in Japan.

Authors:  E Haramoto; H Katayama; C Phanuwan; S Ohgaki
Journal:  Lett Appl Microbiol       Date:  2008-02-07       Impact factor: 2.858

3.  A novel picornavirus associated with gastroenteritis.

Authors:  Linlin Li; Joseph Victoria; Amit Kapoor; Olga Blinkova; Chunlin Wang; Farbod Babrzadeh; Carl J Mason; Prativa Pandey; Hinda Triki; Olfa Bahri; Bamidele Soji Oderinde; Marycelin Mandu Baba; David Nadeba Bukbuk; John M Besser; Joanne M Bartkus; Eric L Delwart
Journal:  J Virol       Date:  2009-09-16       Impact factor: 5.103

4.  Prevalence and genetic diversity of klassevirus in wastewater in Japan.

Authors:  Eiji Haramoto; Mikie Otagiri
Journal:  Food Environ Virol       Date:  2012-11-22       Impact factor: 2.778

5.  Development and evaluation of a real-time RT-PCR assay on the LightCycler for the rapid detection of enterovirus in cerebrospinal fluid specimens.

Authors:  J Petitjean; A Vabret; J Dina; S Gouarin; F Freymuth
Journal:  J Clin Virol       Date:  2005-10-06       Impact factor: 3.168

6.  Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

Authors:  Andrew M Waterhouse; James B Procter; David M A Martin; Michèle Clamp; Geoffrey J Barton
Journal:  Bioinformatics       Date:  2009-01-16       Impact factor: 6.937

7.  Development and evaluation of a 'real-time' RT-PCR for the detection of enterovirus and parechovirus RNA in CSF and throat swab samples.

Authors:  Caroline E Corless; Malcolm Guiver; Raymond Borrow; Valerie Edwards-Jones; Andrew J Fox; Edward B Kaczmarski; Kenneth J Mutton
Journal:  J Med Virol       Date:  2002-08       Impact factor: 2.327

8.  Prevalence, types, and RNA concentrations of human parechoviruses, including a sixth parechovirus type, in stool samples from patients with acute enteritis.

Authors:  Sigrid Baumgarte; Luciano Kleber de Souza Luna; Klaus Grywna; Marcus Panning; Jan Felix Drexler; Claudia Karsten; Hans Iko Huppertz; Christian Drosten
Journal:  J Clin Microbiol       Date:  2007-12-05       Impact factor: 5.948

9.  The complete genome of klassevirus - a novel picornavirus in pediatric stool.

Authors:  Alexander L Greninger; Charles Runckel; Charles Y Chiu; Thomas Haggerty; Julie Parsonnet; Donald Ganem; Joseph L DeRisi
Journal:  Virol J       Date:  2009-06-18       Impact factor: 4.099

10.  Klassevirus 1, a previously undescribed member of the family Picornaviridae, is globally widespread.

Authors:  Lori R Holtz; Stacy R Finkbeiner; Guoyan Zhao; Carl D Kirkwood; Rosina Girones; James M Pipas; David Wang
Journal:  Virol J       Date:  2009-06-24       Impact factor: 4.099
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  8 in total

1.  Quantification and genetic analysis of salivirus/klassevirus in wastewater in Arizona, USA.

Authors:  Masaaki Kitajima; Brandon C Iker; Andri T Rachmadi; Eiji Haramoto; Charles P Gerba
Journal:  Food Environ Virol       Date:  2014-05-27       Impact factor: 2.778

2.  Molecular Detection of Human Salivirus in Italy Through Monitoring of Urban Sewages.

Authors:  Pamela Mancini; Giusy Bonanno Ferraro; Elisabetta Suffredini; Carolina Veneri; Marcello Iaconelli; Teresa Vicenza; Giuseppina La Rosa
Journal:  Food Environ Virol       Date:  2019-10-22       Impact factor: 2.778

3.  The Impact of the Extreme Amazonian Flood Season on the Incidence of Viral Gastroenteritis Cases.

Authors:  Carmen Baur Vieira; Adriana de Abreu Corrêa; Michele Silva de Jesus; Sérgio Luiz Bessa Luz; Peter Wyn-Jones; David Kay; Mônica Simões Rocha; Marize Pereira Miagostovich
Journal:  Food Environ Virol       Date:  2017-02-03       Impact factor: 2.778

4.  Occurrence of Human Cosavirus in Wastewater and River Water in Japan.

Authors:  Eiji Haramoto; Mikie Otagiri
Journal:  Food Environ Virol       Date:  2013-08-13       Impact factor: 2.778

5.  Salivirus in Children and Its Association with Childhood Acute Gastroenteritis: A Paired Case-Control Study.

Authors:  Jie-Mei Yu; Yuan-Yun Ao; Na Liu; Li-Li Li; Zhao-Jun Duan
Journal:  PLoS One       Date:  2015-07-20       Impact factor: 3.240

Review 6.  Overview of Trends in the Application of Metagenomic Techniques in the Analysis of Human Enteric Viral Diversity in Africa's Environmental Regimes.

Authors:  Cecilia Oluseyi Osunmakinde; Ramganesh Selvarajan; Timothy Sibanda; Bhekie B Mamba; Titus A M Msagati
Journal:  Viruses       Date:  2018-08-14       Impact factor: 5.048

Review 7.  A water-focused one-health approach for early detection and prevention of viral outbreaks.

Authors:  Evan O'Brien; Irene Xagoraraki
Journal:  One Health       Date:  2019-04-20

8.  Presence of Human Enteric Viruses, Protozoa, and Indicators of Pathogens in the Bagmati River, Nepal.

Authors:  Sarmila Tandukar; Jeevan B Sherchand; Dinesh Bhandari; Samendra P Sherchan; Bikash Malla; Rajani Ghaju Shrestha; Eiji Haramoto
Journal:  Pathogens       Date:  2018-04-06
  8 in total

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