Literature DB >> 22416820

Ccr4-Not complex: the control freak of eukaryotic cells.

Jason E Miller1, Joseph C Reese.   

Abstract

The purpose of this review is to provide an analysis of the latest developments on the functions of the carbon catabolite-repression 4-Not (Ccr4-Not) complex in regulating eukaryotic gene expression. Ccr4-Not is a nine-subunit protein complex that is conserved in sequence and function throughout the eukaryotic kingdom. Although Ccr4-Not has been studied since the 1980s, our understanding of what it does is constantly evolving. Once thought to solely regulate transcription, it is now clear that it has much broader roles in gene regulation, such as in mRNA decay and quality control, RNA export, translational repression and protein ubiquitylation. The mechanism of actions for each of its functions is still being debated. Some of the difficulty in drawing a clear picture is that it has been implicated in so many processes that regulate mRNAs and proteins in both the cytoplasm and the nucleus. We will describe what is known about the Ccr4-Not complex in yeast and other eukaryotes in an effort to synthesize a unified model for how this complex coordinates multiple steps in gene regulation and provide insights into what questions will be most exciting to answer in the future.

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Year:  2012        PMID: 22416820      PMCID: PMC3376659          DOI: 10.3109/10409238.2012.667214

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  165 in total

1.  miRNA-mediated deadenylation is orchestrated by GW182 through two conserved motifs that interact with CCR4-NOT.

Authors:  Marc R Fabian; Maja K Cieplak; Filipp Frank; Masahiro Morita; Jonathan Green; Tharan Srikumar; Bhushan Nagar; Tadashi Yamamoto; Brian Raught; Thomas F Duchaine; Nahum Sonenberg
Journal:  Nat Struct Mol Biol       Date:  2011-10-07       Impact factor: 15.369

2.  P-body formation is a consequence, not the cause, of RNA-mediated gene silencing.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Daniel Schweizer; Elisa Izaurralde
Journal:  Mol Cell Biol       Date:  2007-04-02       Impact factor: 4.272

Review 3.  Cajal bodies: a long history of discovery.

Authors:  Mario Cioce; Angus I Lamond
Journal:  Annu Rev Cell Dev Biol       Date:  2005       Impact factor: 13.827

4.  Conservation of the deadenylase activity of proteins of the Caf1 family in human.

Authors:  Claire Bianchin; Fabienne Mauxion; Stéphanie Sentis; Bertrand Séraphin; Laura Corbo
Journal:  RNA       Date:  2005-04       Impact factor: 4.942

5.  The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domains.

Authors:  M J Moser; W R Holley; A Chatterjee; I S Mian
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

6.  An array of coactivators is required for optimal recruitment of TATA binding protein and RNA polymerase II by promoter-bound Gcn4p.

Authors:  Hongfang Qiu; Cuihua Hu; Sungpil Yoon; Krishnamurthy Natarajan; Mark J Swanson; Alan G Hinnebusch
Journal:  Mol Cell Biol       Date:  2004-05       Impact factor: 4.272

7.  Repression of promoter activity by CNOT2, a subunit of the transcription regulatory Ccr4-not complex.

Authors:  Carin G M Zwartjes; Sandrine Jayne; Debbie L C van den Berg; H T Marc Timmers
Journal:  J Biol Chem       Date:  2004-01-05       Impact factor: 5.157

8.  The Ccr4-not complex and yTAF1 (yTaf(II)130p/yTaf(II)145p) show physical and functional interactions.

Authors:  Cécile Deluen; Nicole James; Laurent Maillet; Miguel Molinete; Grégory Theiler; Marc Lemaire; Nicole Paquet; Martine A Collart
Journal:  Mol Cell Biol       Date:  2002-10       Impact factor: 4.272

9.  Interplay of positive and negative regulators in transcription initiation by RNA polymerase II holoenzyme.

Authors:  T I Lee; J J Wyrick; S S Koh; E G Jennings; E L Gadbois; R A Young
Journal:  Mol Cell Biol       Date:  1998-08       Impact factor: 4.272

10.  CCR4 is a glucose-regulated transcription factor whose leucine-rich repeat binds several proteins important for placing CCR4 in its proper promoter context.

Authors:  M P Draper; H Y Liu; A H Nelsbach; S P Mosley; C L Denis
Journal:  Mol Cell Biol       Date:  1994-07       Impact factor: 4.272

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  93 in total

1.  The Rpb4/7 module of RNA polymerase II is required for carbon catabolite repressor protein 4-negative on TATA (Ccr4-not) complex to promote elongation.

Authors:  Vinod Babbarwal; Jianhua Fu; Joseph C Reese
Journal:  J Biol Chem       Date:  2014-10-14       Impact factor: 5.157

2.  Def1 interacts with TFIIH and modulates RNA polymerase II transcription.

Authors:  Nivedita Damodaren; Trevor Van Eeuwen; Joanna Zamel; Enrique Lin-Shiao; Nir Kalisman; Kenji Murakami
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-27       Impact factor: 11.205

3.  The transcription factor ERG recruits CCR4-NOT to control mRNA decay and mitotic progression.

Authors:  Xavier Rambout; Cécile Detiffe; Jonathan Bruyr; Emeline Mariavelle; Majid Cherkaoui; Sylvain Brohée; Pauline Demoitié; Marielle Lebrun; Romuald Soin; Bart Lesage; Katia Guedri; Monique Beullens; Mathieu Bollen; Thalia A Farazi; Richard Kettmann; Ingrid Struman; David E Hill; Marc Vidal; Véronique Kruys; Nicolas Simonis; Jean-Claude Twizere; Franck Dequiedt
Journal:  Nat Struct Mol Biol       Date:  2016-06-06       Impact factor: 15.369

4.  Structure and RNA-binding properties of the Not1-Not2-Not5 module of the yeast Ccr4-Not complex.

Authors:  Varun Bhaskar; Vladimir Roudko; Jérôme Basquin; Kundan Sharma; Henning Urlaub; Bertrand Séraphin; Elena Conti
Journal:  Nat Struct Mol Biol       Date:  2013-10-13       Impact factor: 15.369

5.  Adaptive aneuploidy counters a dysregulated SUMO system.

Authors:  Hong-Yeoul Ryu; Mark Hochstrasser
Journal:  Cell Cycle       Date:  2016-11-18       Impact factor: 4.534

Review 6.  Transcription factors that influence RNA polymerases I and II: To what extent is mechanism of action conserved?

Authors:  Yinfeng Zhang; Saman M Najmi; David A Schneider
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2016-10-27       Impact factor: 4.490

Review 7.  So close, no matter how far: multiple paths connecting transcription to mRNA translation in eukaryotes.

Authors:  Boris Slobodin; Rivka Dikstein
Journal:  EMBO Rep       Date:  2020-08-16       Impact factor: 8.807

8.  hCAF1/CNOT7 regulates interferon signalling by targeting STAT1.

Authors:  Clément Chapat; Chloé Kolytcheff; Muriel Le Romancer; Didier Auboeuf; Pierre De La Grange; Kamel Chettab; Stéphanie Sentis; Laura Corbo
Journal:  EMBO J       Date:  2013-02-05       Impact factor: 11.598

9.  Crystal structure and functional properties of the human CCR4-CAF1 deadenylase complex.

Authors:  Ying Chen; Elena Khazina; Elisa Izaurralde; Oliver Weichenrieder
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

Review 10.  The fate of the messenger is pre-determined: a new model for regulation of gene expression.

Authors:  Gal Haimovich; Mordechai Choder; Robert H Singer; Tatjana Trcek
Journal:  Biochim Biophys Acta       Date:  2013-01-19
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