Literature DB >> 25315781

The Rpb4/7 module of RNA polymerase II is required for carbon catabolite repressor protein 4-negative on TATA (Ccr4-not) complex to promote elongation.

Vinod Babbarwal1, Jianhua Fu2, Joseph C Reese3.   

Abstract

Gene expression relies on the balance between mRNA synthesis in the nucleus and decay in the cytoplasm, processes once thought to be separate. We now know that transcription and decay rates are coordinated, but the factors or molecular mechanisms are unclear. The Ccr4-Not complex regulates multiple stages of gene expression, from mRNA synthesis to protein destruction. One of its functions is to promote RNA polymerase II elongation by reactivating arrested elongation complexes. Here we explored the features of polymerase required for Ccr4-Not to promote elongation and found that the Rpb4/7 module is important for Ccr4-Not to associate with elongation complexes and stimulate elongation. Rpb4/7 has also been implicated in coordinating mRNA synthesis and decay, but its role in this process is controversial. The interplay between Ccr4-Not and Rpb4/7 described here suggests a mechanism for how the cell coordinates mRNA synthesis and decay.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Ccr4-Not; RNA Polymerase II; RNA Synthesis; Transcription Elongation Factor; Transcription Regulation; mRNA Decay

Mesh:

Substances:

Year:  2014        PMID: 25315781      PMCID: PMC4246073          DOI: 10.1074/jbc.C114.601088

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  26 in total

1.  Analysis of polymerase II elongation complexes by native gel electrophoresis. Evidence for a novel carboxyl-terminal domain-mediated termination mechanism.

Authors:  Zhiqiang Zhang; Chwen-Huey Wu; David S Gilmour
Journal:  J Biol Chem       Date:  2004-03-31       Impact factor: 5.157

Review 2.  Rpb4 and Rpb7: subunits of RNA polymerase II and beyond.

Authors:  Mordechai Choder
Journal:  Trends Biochem Sci       Date:  2004-12       Impact factor: 13.807

3.  Fcp1 directly recognizes the C-terminal domain (CTD) and interacts with a site on RNA polymerase II distinct from the CTD.

Authors:  Man-Hee Suh; Ping Ye; Mincheng Zhang; Stéphane Hausmann; Stewart Shuman; Averell L Gnatt; Jianhua Fu
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-21       Impact factor: 11.205

4.  The RNA polymerase II subunit Rpb4p mediates decay of a specific class of mRNAs.

Authors:  Rona Lotan; Vicky Goler Bar-On; Liat Harel-Sharvit; Lea Duek; Daniel Melamed; Mordechai Choder
Journal:  Genes Dev       Date:  2005-12-15       Impact factor: 11.361

5.  Structure of wild-type yeast RNA polymerase II and location of Rpb4 and Rpb7.

Authors:  G J Jensen; G Meredith; D A Bushnell; R D Kornberg
Journal:  EMBO J       Date:  1998-04-15       Impact factor: 11.598

6.  The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae.

Authors:  M Tucker; M A Valencia-Sanchez; R R Staples; J Chen; C L Denis; R Parker
Journal:  Cell       Date:  2001-02-09       Impact factor: 41.582

7.  Rpb4 subunit functions mainly in mRNA synthesis by RNA polymerase II.

Authors:  Daniel Schulz; Nicole Pirkl; Elisabeth Lehmann; Patrick Cramer
Journal:  J Biol Chem       Date:  2014-05-05       Impact factor: 5.157

8.  Two dissociable subunits of yeast RNA polymerase II stimulate the initiation of transcription at a promoter in vitro.

Authors:  A M Edwards; C M Kane; R A Young; R D Kornberg
Journal:  J Biol Chem       Date:  1991-01-05       Impact factor: 5.157

9.  The Rpb4 subunit of RNA polymerase II contributes to cotranscriptional recruitment of 3' processing factors.

Authors:  Vanessa M Runner; Vladimir Podolny; Stephen Buratowski
Journal:  Mol Cell Biol       Date:  2008-01-14       Impact factor: 4.272

10.  The Rpb7p subunit of yeast RNA polymerase II plays roles in the two major cytoplasmic mRNA decay mechanisms.

Authors:  Rona Lotan; Vicky Goler-Baron; Lea Duek; Gal Haimovich; Mordechai Choder
Journal:  J Cell Biol       Date:  2007-09-17       Impact factor: 10.539

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  20 in total

1.  Biochemical Analysis of Yeast Suppressor of Ty 4/5 (Spt4/5) Reveals the Importance of Nucleic Acid Interactions in the Prevention of RNA Polymerase II Arrest.

Authors:  J Brooks Crickard; Jianhua Fu; Joseph C Reese
Journal:  J Biol Chem       Date:  2016-03-04       Impact factor: 5.157

Review 2.  So close, no matter how far: multiple paths connecting transcription to mRNA translation in eukaryotes.

Authors:  Boris Slobodin; Rivka Dikstein
Journal:  EMBO Rep       Date:  2020-08-16       Impact factor: 8.807

3.  Antagonistic roles for the ubiquitin ligase Asr1 and the ubiquitin-specific protease Ubp3 in subtelomeric gene silencing.

Authors:  Tyler S McCann; Yan Guo; W Hayes McDonald; William P Tansey
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

4.  Ccr4-Not and TFIIS Function Cooperatively To Rescue Arrested RNA Polymerase II.

Authors:  Arnob Dutta; Vinod Babbarwal; Jianhua Fu; Deborah Brunke-Reese; Diane M Libert; Jonathan Willis; Joseph C Reese
Journal:  Mol Cell Biol       Date:  2015-03-16       Impact factor: 4.272

5.  Translational Capacity of a Cell Is Determined during Transcription Elongation via the Ccr4-Not Complex.

Authors:  Ishaan Gupta; Zoltan Villanyi; Sari Kassem; Christopher Hughes; Olesya O Panasenko; Lars M Steinmetz; Martine A Collart
Journal:  Cell Rep       Date:  2016-05-12       Impact factor: 9.423

6.  Feedback to the central dogma: cytoplasmic mRNA decay and transcription are interdependent processes.

Authors:  Ella Hartenian; Britt A Glaunsinger
Journal:  Crit Rev Biochem Mol Biol       Date:  2019-10-27       Impact factor: 8.250

7.  Ccr4-not regulates RNA polymerase I transcription and couples nutrient signaling to the control of ribosomal RNA biogenesis.

Authors:  R Nicholas Laribee; Amira Hosni-Ahmed; Jason J Workman; Hongfeng Chen
Journal:  PLoS Genet       Date:  2015-03-27       Impact factor: 5.917

Review 8.  Regulation of Eukaryotic RNAPs Activities by Phosphorylation.

Authors:  Araceli González-Jiménez; Adrián Campos; Francisco Navarro; Andrés Clemente-Blanco; Olga Calvo
Journal:  Front Mol Biosci       Date:  2021-06-25

Review 9.  Ccr4-Not as a mediator of environmental signaling: a jack of all trades and master of all.

Authors:  R Nicholas Laribee
Journal:  Curr Genet       Date:  2021-03-31       Impact factor: 2.695

10.  The architecture of the Schizosaccharomyces pombe CCR4-NOT complex.

Authors:  Marta Ukleja; Jorge Cuellar; Aleksandra Siwaszek; Joanna M Kasprzak; Mariusz Czarnocki-Cieciura; Janusz M Bujnicki; Andrzej Dziembowski; Jose M Valpuesta
Journal:  Nat Commun       Date:  2016-01-25       Impact factor: 14.919

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