Literature DB >> 22412593

8,10-Diiodo-2,6-dioxo-4λ-ioda-3,5-dioxatricyclo-[5.3.1.0]undeca-1(11),7,9-triene-9-carb-oxy-lic acid.

Daopeng Sheng1, Lu Han, Yi Zhang, Yanzhao Yang.   

Abstract

In the title compound, C(9)HI(3)O(6)·2H(2)O, the mol-ecule is located on a twofold axis that gives rise to disorder of the carboxyl group. This disorder is correlated with the disorder of one of the H atoms of the water mol-ecule. The carboxyl group is twisted relative to the attached benzene ring by 75.1 (4)°. The intra-molecular I⋯O distance is 2.112 (6) Å. Mol-ecules are linked via O-H⋯O hydrogen bonding, C-I⋯O halogen bonding, with I⋯O distances in the range 3.156 (5)-3.274 (6) Å, and dipolar C=O⋯C=O inter-actions between the carboxyl and carboxyl-ate groups, with an O⋯C distance of 2.944 (10) Å.

Entities:  

Year:  2012        PMID: 22412593      PMCID: PMC3295482          DOI: 10.1107/S1600536812005351

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to 1,3,5-triiodo­benzene derivatives, see: Morin et al. (1987 ▶); Yu & Watson (1999 ▶). For information on the related compound 1,3,5-triiodo-2,4,6-trimethyl­benzene, see: Bosch & Barnes (2002 ▶); Boudjada et al. (2001 ▶); Reddy et al. (2006 ▶). For the crystal structures of 5-amino-2,4,6-triiodo­isophthalic acid monohydrate and 5-amino-2,4,6-triiodo­isophthalic acid–4,4′-bipyridine N,N′-dioxide–water (1/1/1), see: Beck & Sheldrick (2008 ▶); Zhang et al. (2011 ▶).

Experimental

Crystal data

C9HI3O6·2H2O M = 621.83 Monoclinic, a = 14.7667 (8) Å b = 11.9890 (6) Å c = 9.7419 (5) Å β = 127.4236 (5)° V = 1369.68 (12) Å3 Z = 4 Mo Kα radiation μ = 6.88 mm−1 T = 130 K 0.32 × 0.14 × 0.12 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (APEX2; Bruker, 2007 ▶) T min = 0.217, T max = 0.492 4078 measured reflections 1547 independent reflections 1515 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.097 S = 1.23 1547 reflections 93 parameters H-atom parameters constrained Δρmax = 2.36 e Å−3 Δρmin = −2.23 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812005351/gk2447sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005351/gk2447Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812005351/gk2447Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9HI3O6·2H2OF(000) = 1128
Mr = 621.83Dx = 3.016 Mg m3
Monoclinic, C2/cMelting point: 573 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71069 Å
a = 14.7667 (8) ÅCell parameters from 3350 reflections
b = 11.9890 (6) Åθ = 2.4–27.4°
c = 9.7419 (5) ŵ = 6.88 mm1
β = 127.4236 (5)°T = 130 K
V = 1369.68 (12) Å3Prism, colourless
Z = 40.32 × 0.14 × 0.12 mm
Bruker APEXII CCD area-detector diffractometer1547 independent reflections
Radiation source: fine-focus sealed tube1515 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.016
φ and ω scansθmax = 27.4°, θmin = 2.4°
Absorption correction: multi-scan (APEX2; Bruker, 2007)h = −10→19
Tmin = 0.217, Tmax = 0.492k = −14→15
4078 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H-atom parameters constrained
S = 1.23w = 1/[σ2(Fo2) + (0.0157P)2 + 40.7765P] where P = (Fo2 + 2Fc2)/3
1547 reflections(Δ/σ)max < 0.001
93 parametersΔρmax = 2.36 e Å3
0 restraintsΔρmin = −2.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.50000.3381 (8)0.75000.0216 (19)
C20.4147 (5)0.3903 (6)0.5979 (8)0.0207 (13)
C30.4155 (6)0.5066 (6)0.5979 (9)0.0249 (14)
C40.3340 (6)0.3120 (6)0.4528 (9)0.0248 (14)
C50.50000.5629 (8)0.75000.0222 (19)
C60.50000.6916 (8)0.75000.027 (2)
I10.50000.16946 (5)0.75000.02526 (18)
I20.29502 (5)0.59994 (5)0.37929 (8)0.0469 (2)
O10.2532 (5)0.3419 (5)0.3093 (7)0.0386 (14)
O20.3559 (5)0.2049 (5)0.4946 (7)0.0313 (12)
O30.5338 (6)0.7375 (5)0.6751 (9)0.0474 (16)
H30.53080.80540.68180.071*0.50
O1W0.4370 (6)0.9449 (6)0.5383 (9)0.0494 (16)
H1W0.47630.89100.59580.074*0.50
H2W0.47560.98960.53030.074*0.50
H3W0.38310.92400.44160.074*
U11U22U33U12U13U23
C10.021 (4)0.019 (4)0.021 (5)0.0000.011 (4)0.000
C20.017 (3)0.024 (3)0.012 (3)0.000 (2)0.004 (2)−0.001 (2)
C30.021 (3)0.030 (4)0.017 (3)0.005 (3)0.008 (3)0.004 (3)
C40.021 (3)0.031 (4)0.015 (3)−0.002 (3)0.007 (3)−0.003 (3)
C50.026 (5)0.018 (4)0.029 (5)0.0000.020 (4)0.000
C60.039 (6)0.012 (4)0.035 (6)0.0000.025 (5)0.000
I10.0282 (3)0.0169 (3)0.0269 (3)0.0000.0148 (3)0.000
I20.0427 (4)0.0392 (3)0.0341 (3)0.0125 (2)0.0104 (3)0.0160 (2)
O10.031 (3)0.042 (3)0.019 (3)0.000 (3)0.003 (2)−0.004 (2)
O20.030 (3)0.029 (3)0.024 (3)−0.008 (2)0.011 (2)−0.008 (2)
O30.074 (5)0.028 (3)0.069 (5)0.000 (3)0.058 (4)0.005 (3)
O1W0.050 (4)0.044 (4)0.048 (4)−0.008 (3)0.026 (3)−0.002 (3)
C1—C2i1.380 (8)C5—C3i1.400 (8)
C1—I12.022 (9)C5—C61.543 (13)
C2—C31.394 (10)C6—O31.237 (7)
C2—C41.501 (9)I1—O22.113 (5)
C3—C51.400 (8)O3—H30.8200
C3—I22.085 (7)O1W—H1W0.8201
C4—O11.216 (9)O1W—H2W0.8200
C4—O21.326 (9)O1W—H3W0.8201
C4···O3ii2.944 (10)I2···O2iv3.156 (5)
I1···O1Wiii3.173 (7)I2···O1iv3.274 (6)
C2i—C1—C2126.1 (9)C3—C5—C3i122.3 (9)
C2i—C1—I1117.0 (5)C3—C5—C6118.8 (5)
C2—C1—I1117.0 (5)O3i—C6—O3127.1 (10)
C1—C2—C3116.8 (6)O3—C6—C5116.5 (5)
C1—C2—C4114.3 (6)C1—I1—O278.38 (15)
C3—C2—C4128.9 (6)O2i—I1—O2156.8 (3)
C2—C3—C5119.0 (7)C4—O2—I1116.1 (4)
C2—C3—I2122.3 (5)C6—O3—H3109.5
C5—C3—I2118.7 (6)H1W—O1W—H2W109.6
O1—C4—O2121.6 (7)H1W—O1W—H3W109.5
O1—C4—C2124.1 (7)H2W—O1W—H3W109.6
O2—C4—C2114.2 (6)
C2i—C1—C2—C30.5 (5)I2—C3—C5—C3i−179.6 (5)
I1—C1—C2—C3−179.5 (5)C2—C3—C5—C6−179.5 (5)
C2i—C1—C2—C4179.7 (6)I2—C3—C5—C60.4 (5)
I1—C1—C2—C4−0.3 (6)C3—C5—C6—O3i105.1 (5)
C1—C2—C3—C5−0.9 (9)C3—C5—C6—O3−74.9 (5)
C4—C2—C3—C5180.0 (6)C3i—C5—C6—O3105.1 (5)
C1—C2—C3—I2179.1 (4)C2i—C1—I1—O2179.6 (4)
C4—C2—C3—I20.1 (11)C2—C1—I1—O2−0.4 (4)
C1—C2—C4—O1179.7 (7)O1—C4—O2—I1180.0 (6)
C3—C2—C4—O1−1.3 (13)C2—C4—O2—I1−1.5 (8)
C1—C2—C4—O21.2 (9)C1—I1—O2—C41.1 (5)
C3—C2—C4—O2−179.7 (7)O2i—I1—O2—C41.1 (5)
C2—C3—C5—C3i0.5 (5)
D—H···AD—HH···AD···AD—H···A
O3—H3···O1W0.822.082.772 (9)142
O1W—H1W···O30.821.982.772 (9)163
O1W—H2W···O1Wv0.821.942.730 (14)160
O1W—H3W···O1iv0.822.243.053 (9)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O1W0.822.082.772 (9)142
O1W—H1W⋯O30.821.982.772 (9)163
O1W—H2W⋯O1Wi0.821.942.730 (14)160
O1W—H3W⋯O1ii0.822.243.053 (9)172

Symmetry codes: (i) ; (ii) .

  7 in total

1.  Metal-Based X-ray Contrast Media.

Authors:  S B Yu; A D Watson
Journal:  Chem Rev       Date:  1999-09-08       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  [Comparative pharmacokinetics and renal accumulation of the iodized contrast media: ioxitalamic acid, ioxaglic acid and iohexol in the rabbit].

Authors:  J P Morin; I Boutelet; H Toutain; J P Fillastre
Journal:  Pathol Biol (Paris)       Date:  1987-11

4.  Isostructurality, polymorphism and mechanical properties of some hexahalogenated benzenes: the nature of halogen...halogen interactions.

Authors:  C Malla Reddy; Michael T Kirchner; Ravi C Gundakaram; K Anantha Padmanabhan; Gautam R Desiraju
Journal:  Chemistry       Date:  2006-03-01       Impact factor: 5.236

5.  1,3,5-Triiodo-2,4,6-trimethylbenzene at 293 K.

Authors:  A Boudjada; O Hernandez; J Meinnel; M Mani; W Paulus
Journal:  Acta Crystallogr C       Date:  2001-09-11       Impact factor: 1.172

6.  5-Amino-2,4,6-triiodo-isophthalic acid monohydrate.

Authors:  Tobias Beck; George M Sheldrick
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-19

7.  5-Amino-2,4,6-triiodo-isophthalic acid-4,4'-bipyridine N,N'-dioxide-water (1/1/1).

Authors:  Kou-Lin Zhang; Jin-Bo Zhang; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-05
  7 in total

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