Literature DB >> 22969531

2-Methyl-3-nitro-N-{(E)-[5-(4-nitro-phen-yl)furan-2-yl]methyl-idene}aniline.

Merve Pekdemir, Samil Işık, Sümeyye Gümüş, Erbil Ağar, Sema Oztürk Yıldırım, Ray J Butcher.   

Abstract

In the title Schiff-base type compound, C(18)H(13)N(3)O(5), the central furan ring makes dihedral angles of 12.80 (7) and 51.43 (4)° with the terminal benzene rings. The dihedral angle between the benzene rings is 45.43 (3)°. In the crystal, C-H⋯O hydrogen bonds link the mol-ecules into layers parallel to (010). In addition, there are π-π stacking inter-actions within the layer [centroid-centroid distance = 3.584 (1) Å] and between the layers [centroid-centroid distance 3.751 (1) Å].

Entities:  

Year:  2012        PMID: 22969531      PMCID: PMC3435658          DOI: 10.1107/S1600536812033818

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For similar Schiff bases, see: Yamada et al. (2002 ▶); Cukurovali et al. (2002 ▶); Isloor et al. (2009 ▶); Abu Thaher et al. (2012 ▶). For the biological activity of Schiff bases, see: Vijesh et al. (2010 ▶); Tarafder et al. (2002 ▶); Ghorab et al. (2010 ▶); Ali et al. (2002 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C18H13N3O5 M = 351.31 Monoclinic, a = 10.9026 (3) Å b = 10.2798 (3) Å c = 14.2962 (3) Å β = 101.529 (2)° V = 1569.94 (7) Å3 Z = 4 Cu Kα radiation μ = 0.93 mm−1 T = 123 K 0.50 × 0.40 × 0.40 mm

Data collection

Oxford Diffraction Gemini-R diffractometer Absorption correction: multi-scan [CrysAlis RED (Oxford Diffraction, 2007 ▶), and Clark & Reid (1995 ▶)] T min = 0.671, T max = 0.688 6460 measured reflections 3171 independent reflections 2764 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.118 S = 1.05 3171 reflections 236 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812033818/gk2492sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033818/gk2492Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812033818/gk2492Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H13N3O5F(000) = 728
Mr = 351.31Dx = 1.486 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.5418 Å
Hall symbol: -P 2ybcCell parameters from 3039 reflections
a = 10.9026 (3) Åθ = 3.2–75.5°
b = 10.2798 (3) ŵ = 0.93 mm1
c = 14.2962 (3) ÅT = 123 K
β = 101.529 (2)°Block, light yellow
V = 1569.94 (7) Å30.50 × 0.40 × 0.40 mm
Z = 4
Oxford Diffraction Gemini-R diffractometer3171 independent reflections
Radiation source: Enhance (Cu) X-ray Source2764 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
Detector resolution: 10.5081 pixels mm-1θmax = 75.7°, θmin = 4.1°
ω scansh = −12→13
Absorption correction: multi-scan [CrysAlis RED (Oxford Diffraction, 2007), and Clark & Reid (1995)]k = −12→12
Tmin = 0.671, Tmax = 0.688l = −17→7
6460 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0671P)2 + 0.3233P] where P = (Fo2 + 2Fc2)/3
3171 reflections(Δ/σ)max < 0.001
236 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1−0.22774 (12)0.22828 (14)−0.24867 (10)0.0309 (3)
N20.28795 (11)0.40005 (12)0.30426 (9)0.0224 (3)
N30.26983 (13)0.41136 (13)0.64618 (9)0.0281 (3)
O1−0.32515 (11)0.21084 (14)−0.21964 (10)0.0412 (3)
O2−0.21821 (12)0.20872 (15)−0.33171 (9)0.0448 (3)
O30.20668 (9)0.40126 (10)0.10398 (7)0.0206 (2)
O40.15778 (13)0.43153 (18)0.63095 (9)0.0537 (4)
O50.33489 (12)0.41218 (14)0.72703 (8)0.0403 (3)
C1−0.11759 (13)0.27566 (15)−0.18146 (10)0.0247 (3)
C2−0.01288 (15)0.31134 (16)−0.21649 (11)0.0280 (3)
H2A−0.01210.3041−0.28120.034*
C30.09029 (14)0.35784 (16)−0.15327 (10)0.0258 (3)
H3A0.16110.3832−0.17560.031*
C40.08916 (13)0.36719 (14)−0.05598 (10)0.0209 (3)
C5−0.01791 (13)0.32932 (14)−0.02242 (10)0.0224 (3)
H5A−0.01870.33450.04240.027*
C6−0.12221 (13)0.28430 (14)−0.08556 (11)0.0242 (3)
H6A−0.19400.2603−0.06410.029*
C70.20003 (13)0.41645 (14)0.00792 (10)0.0204 (3)
C80.30432 (14)0.47801 (15)−0.00873 (10)0.0236 (3)
H8A0.32170.4999−0.06790.028*
C90.38082 (14)0.50202 (15)0.08172 (10)0.0236 (3)
H9A0.45850.54280.09360.028*
C100.31886 (13)0.45401 (14)0.14813 (10)0.0215 (3)
C110.35804 (13)0.44480 (14)0.25000 (10)0.0222 (3)
H11A0.43820.47270.27780.027*
C120.34377 (13)0.38033 (14)0.40136 (10)0.0216 (3)
C130.46195 (14)0.32360 (15)0.42596 (11)0.0248 (3)
H13A0.50560.30280.37830.030*
C140.51519 (14)0.29778 (15)0.52044 (11)0.0270 (3)
H14A0.59450.26080.53610.032*
C150.45026 (14)0.32705 (15)0.59109 (10)0.0248 (3)
H15A0.48490.30990.65480.030*
C160.33171 (13)0.38282 (14)0.56546 (10)0.0221 (3)
C170.27330 (13)0.41176 (14)0.47145 (10)0.0208 (3)
C180.14791 (14)0.47584 (16)0.43966 (11)0.0267 (3)
H18A0.14860.55960.46940.040*
H18B0.08410.42270.45770.040*
H18C0.13100.48610.37150.040*
U11U22U33U12U13U23
N10.0263 (7)0.0291 (7)0.0333 (7)0.0015 (5)−0.0037 (5)−0.0025 (6)
N20.0224 (6)0.0234 (6)0.0213 (6)0.0002 (5)0.0040 (5)−0.0015 (5)
N30.0339 (7)0.0280 (7)0.0237 (6)−0.0029 (6)0.0091 (5)0.0007 (5)
O10.0234 (6)0.0482 (8)0.0492 (7)−0.0046 (5)0.0003 (5)−0.0067 (6)
O20.0407 (7)0.0580 (9)0.0306 (6)−0.0050 (6)−0.0051 (5)−0.0087 (6)
O30.0211 (5)0.0228 (5)0.0177 (5)−0.0007 (4)0.0034 (4)−0.0005 (4)
O40.0355 (7)0.0957 (13)0.0336 (7)0.0182 (8)0.0155 (5)0.0061 (7)
O50.0425 (7)0.0572 (8)0.0218 (6)−0.0081 (6)0.0076 (5)−0.0048 (5)
C10.0221 (7)0.0231 (7)0.0263 (7)0.0025 (6)−0.0015 (6)−0.0012 (6)
C20.0282 (7)0.0338 (8)0.0212 (7)0.0010 (6)0.0031 (6)−0.0012 (6)
C30.0238 (7)0.0314 (8)0.0230 (7)0.0001 (6)0.0067 (5)0.0022 (6)
C40.0213 (7)0.0194 (7)0.0215 (7)0.0028 (5)0.0031 (5)0.0013 (5)
C50.0234 (7)0.0221 (7)0.0220 (7)0.0029 (6)0.0056 (5)0.0008 (6)
C60.0209 (7)0.0226 (7)0.0295 (8)0.0024 (6)0.0061 (6)0.0025 (6)
C70.0229 (7)0.0206 (7)0.0182 (7)0.0043 (5)0.0051 (5)0.0020 (5)
C80.0234 (7)0.0265 (7)0.0218 (7)0.0022 (6)0.0064 (5)0.0030 (6)
C90.0212 (7)0.0245 (7)0.0254 (7)−0.0009 (6)0.0052 (5)0.0004 (6)
C100.0190 (6)0.0206 (7)0.0247 (7)−0.0002 (5)0.0043 (5)−0.0011 (6)
C110.0217 (7)0.0208 (7)0.0239 (7)−0.0005 (6)0.0038 (5)−0.0022 (6)
C120.0229 (7)0.0211 (7)0.0205 (7)−0.0037 (6)0.0037 (5)−0.0014 (5)
C130.0246 (7)0.0262 (7)0.0246 (7)0.0001 (6)0.0073 (6)−0.0020 (6)
C140.0226 (7)0.0270 (8)0.0299 (8)0.0025 (6)0.0016 (6)−0.0013 (6)
C150.0271 (7)0.0234 (7)0.0219 (7)−0.0036 (6)−0.0001 (5)0.0000 (6)
C160.0254 (7)0.0205 (7)0.0215 (7)−0.0050 (6)0.0069 (5)−0.0023 (5)
C170.0204 (7)0.0189 (7)0.0236 (7)−0.0033 (5)0.0053 (5)−0.0012 (5)
C180.0237 (7)0.0295 (8)0.0270 (7)0.0022 (6)0.0056 (6)0.0001 (6)
N1—O11.2282 (18)C7—C81.363 (2)
N1—O21.2288 (19)C8—C91.413 (2)
N1—C11.4633 (19)C8—H8A0.9300
N2—C111.2783 (19)C9—C101.363 (2)
N2—C121.4145 (18)C9—H9A0.9300
N3—O41.2151 (19)C10—C111.437 (2)
N3—O51.2294 (18)C11—H11A0.9300
N3—C161.4779 (18)C12—C131.394 (2)
O3—C71.3696 (16)C12—C171.417 (2)
O3—C101.3711 (17)C13—C141.385 (2)
C1—C21.385 (2)C13—H13A0.9300
C1—C61.385 (2)C14—C151.378 (2)
C2—C31.380 (2)C14—H14A0.9300
C2—H2A0.9300C15—C161.394 (2)
C3—C41.397 (2)C15—H15A0.9300
C3—H3A0.9300C16—C171.399 (2)
C4—C51.403 (2)C17—C181.504 (2)
C4—C71.453 (2)C18—H18A0.9600
C5—C61.383 (2)C18—H18B0.9600
C5—H5A0.9300C18—H18C0.9600
C6—H6A0.9300
O1—N1—O2123.25 (14)C10—C9—H9A126.6
O1—N1—C1118.58 (14)C8—C9—H9A126.6
O2—N1—C1118.17 (14)C9—C10—O3110.08 (12)
C11—N2—C12117.06 (12)C9—C10—C11129.92 (13)
O4—N3—O5122.54 (14)O3—C10—C11119.85 (12)
O4—N3—C16119.57 (13)N2—C11—C10123.11 (13)
O5—N3—C16117.89 (13)N2—C11—H11A118.4
C7—O3—C10106.26 (11)C10—C11—H11A118.4
C2—C1—C6122.47 (14)C13—C12—N2120.15 (13)
C2—C1—N1118.59 (14)C13—C12—C17121.44 (13)
C6—C1—N1118.94 (14)N2—C12—C17118.28 (13)
C3—C2—C1118.55 (14)C14—C13—C12120.82 (14)
C3—C2—H2A120.7C14—C13—H13A119.6
C1—C2—H2A120.7C12—C13—H13A119.6
C2—C3—C4120.52 (14)C15—C14—C13119.77 (14)
C2—C3—H3A119.7C15—C14—H14A120.1
C4—C3—H3A119.7C13—C14—H14A120.1
C3—C4—C5119.67 (13)C14—C15—C16118.84 (14)
C3—C4—C7118.58 (13)C14—C15—H15A120.6
C5—C4—C7121.76 (13)C16—C15—H15A120.6
C6—C5—C4120.11 (13)C15—C16—C17124.04 (14)
C6—C5—H5A119.9C15—C16—N3114.85 (13)
C4—C5—H5A119.9C17—C16—N3121.10 (13)
C5—C6—C1118.68 (14)C16—C17—C12115.08 (13)
C5—C6—H6A120.7C16—C17—C18126.53 (13)
C1—C6—H6A120.7C12—C17—C18118.35 (13)
C8—C7—O3110.44 (13)C17—C18—H18A109.5
C8—C7—C4132.08 (13)C17—C18—H18B109.5
O3—C7—C4117.48 (12)H18A—C18—H18B109.5
C7—C8—C9106.36 (13)C17—C18—H18C109.5
C7—C8—H8A126.8H18A—C18—H18C109.5
C9—C8—H8A126.8H18B—C18—H18C109.5
C10—C9—C8106.86 (13)
O1—N1—C1—C2−171.75 (15)C7—O3—C10—C90.44 (15)
O2—N1—C1—C27.8 (2)C7—O3—C10—C11−175.51 (13)
O1—N1—C1—C67.7 (2)C12—N2—C11—C10171.79 (14)
O2—N1—C1—C6−172.80 (15)C9—C10—C11—N2178.09 (15)
C6—C1—C2—C3−0.3 (2)O3—C10—C11—N2−6.9 (2)
N1—C1—C2—C3179.05 (14)C11—N2—C12—C13−43.4 (2)
C1—C2—C3—C40.7 (2)C11—N2—C12—C17140.62 (14)
C2—C3—C4—C5−0.2 (2)N2—C12—C13—C14−176.78 (14)
C2—C3—C4—C7179.87 (14)C17—C12—C13—C14−0.9 (2)
C3—C4—C5—C6−0.7 (2)C12—C13—C14—C150.7 (2)
C7—C4—C5—C6179.25 (13)C13—C14—C15—C16−0.2 (2)
C4—C5—C6—C11.0 (2)C14—C15—C16—C17−0.1 (2)
C2—C1—C6—C5−0.5 (2)C14—C15—C16—N3−179.66 (13)
N1—C1—C6—C5−179.91 (13)O4—N3—C16—C15−163.26 (16)
C10—O3—C7—C8−0.50 (15)O5—N3—C16—C1515.9 (2)
C10—O3—C7—C4179.55 (12)O4—N3—C16—C1717.2 (2)
C3—C4—C7—C812.5 (2)O5—N3—C16—C17−163.65 (14)
C5—C4—C7—C8−167.42 (15)C15—C16—C17—C12−0.1 (2)
C3—C4—C7—O3−167.53 (13)N3—C16—C17—C12179.45 (12)
C5—C4—C7—O312.5 (2)C15—C16—C17—C18−177.78 (14)
O3—C7—C8—C90.36 (17)N3—C16—C17—C181.8 (2)
C4—C7—C8—C9−179.70 (15)C13—C12—C17—C160.6 (2)
C7—C8—C9—C10−0.08 (17)N2—C12—C17—C16176.52 (12)
C8—C9—C10—O3−0.23 (17)C13—C12—C17—C18178.50 (14)
C8—C9—C10—C11175.19 (15)N2—C12—C17—C18−5.6 (2)
D—H···AD—HH···AD···AD—H···A
C18—H18C···N20.962.302.8047 (19)112
C3—H3A···O5i0.932.583.4895 (19)165
C13—H13A···O1ii0.932.533.432 (2)162
C14—H14A···O2iii0.932.553.361 (2)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3A⋯O5i 0.932.583.4895 (19)165
C13—H13A⋯O1ii 0.932.533.432 (2)162
C14—H14A⋯O2iii 0.932.553.361 (2)147

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Regioselective reaction: synthesis, characterization and pharmacological studies of some new Mannich bases derived from 1,2,4-triazoles.

Authors:  Arun M Isloor; Balakrishna Kalluraya; Prashanth Shetty
Journal:  Eur J Med Chem       Date:  2009-05-05       Impact factor: 6.514

3.  Biological activity of palladium(II) and platinum(II) complexes of the acetone Schiff bases of S-methyl- and S-benzyldithiocarbazate and the X-ray crystal structure of the [Pd(asme)2] (asme=anionic form of the acetone Schiff base of S-methyldithiocarbazate) complex.

Authors:  Mohammad Akbar Ali; Aminul Huq Mirza; Raymond J Butcher; M T H Tarafder; Tan Boon Keat; A Manaf Ali
Journal:  J Inorg Biochem       Date:  2002-11-25       Impact factor: 4.155

4.  Synthesis, characterization and anti-microbial studies of some novel 2,4-disubstituted thiazoles.

Authors:  A M Vijesh; Arun M Isloor; Vivek Prabhu; Shaoib Ahmad; Shridhar Malladi
Journal:  Eur J Med Chem       Date:  2010-08-06       Impact factor: 6.514

5.  Synthesis of some new pyrazolo[3,4-d]pyrimidine derivatives of expected anticancer and radioprotective activity.

Authors:  Mostafa M Ghorab; Fatma A Ragab; Saleh I Alqasoumi; Ahmed M Alafeefy; Sarah A Aboulmagd
Journal:  Eur J Med Chem       Date:  2009-09-30       Impact factor: 6.514

6.  4-(4-Fluoro-phen-yl)-1-(4-nitro-phen-yl)-3-(pyridin-4-yl)-1H-pyrazol-5-amine.

Authors:  Bassam Abu Thaher; Pierre Koch; Dieter Schollmeyer; Stefan Laufer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-10
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.