Literature DB >> 22405012

Cdc6-induced conformational changes in ORC bound to origin DNA revealed by cryo-electron microscopy.

Jingchuan Sun1, Hironori Kawakami, Juergen Zech, Christian Speck, Bruce Stillman, Huilin Li.   

Abstract

The eukaryotic origin recognition complex (ORC) interacts with and remodels origins of DNA replication prior to initiation in S phase. Here, we report a single-particle cryo-EM-derived structure of the supramolecular assembly comprising Saccharomyces cerevisiae ORC, the replication initiation factor Cdc6, and double-stranded ARS1 origin DNA in the presence of ATPγS. The six subunits of ORC are arranged as Orc1:Orc4:Orc5:Orc2:Orc3, with Orc6 binding to Orc2. Cdc6 binding changes the conformation of ORC, in particular reorienting the Orc1 N-terminal BAH domain. Segmentation of the 3D map of ORC-Cdc6 on DNA and docking with the crystal structure of the homologous archaeal Orc1/Cdc6 protein suggest an origin DNA binding model in which the DNA tracks along the interior surface of the crescent-like ORC. Thus, ORC bends and wraps the DNA. This model is consistent with the observation that binding of a single Cdc6 extends the ORC footprint on origin DNA from both ends. Copyright Â
© 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22405012      PMCID: PMC3299985          DOI: 10.1016/j.str.2012.01.011

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  55 in total

1.  Mapping subunit location on the Saccharomyces cerevisiae origin recognition complex free and bound to DNA using a novel nanoscale biopointer.

Authors:  Paul D Chastain; Jayson L Bowers; Daniel G Lee; Stephen P Bell; Jack D Griffith
Journal:  J Biol Chem       Date:  2004-06-16       Impact factor: 5.157

2.  Conformational changes induced by nucleotide binding in Cdc6/ORC from Aeropyrum pernix.

Authors:  Martin R Singleton; Renaud Morales; Ian Grainge; Nicola Cook; Michail N Isupov; Dale B Wigley
Journal:  J Mol Biol       Date:  2004-10-22       Impact factor: 5.469

3.  Multiple Cdt1 molecules act at each origin to load replication-competent Mcm2-7 helicases.

Authors:  Thomas J Takara; Stephen P Bell
Journal:  EMBO J       Date:  2011-11-01       Impact factor: 11.598

4.  ATP hydrolysis by ORC catalyzes reiterative Mcm2-7 assembly at a defined origin of replication.

Authors:  Jayson L Bowers; John C W Randell; Shuyan Chen; Stephen P Bell
Journal:  Mol Cell       Date:  2004-12-22       Impact factor: 17.970

5.  Assembly of the human origin recognition complex.

Authors:  S Vashee; P Simancek; M D Challberg; T J Kelly
Journal:  J Biol Chem       Date:  2001-04-25       Impact factor: 5.157

6.  Protein structure prediction on the Web: a case study using the Phyre server.

Authors:  Lawrence A Kelley; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

7.  Architecture of the yeast origin recognition complex bound to origins of DNA replication.

Authors:  D G Lee; S P Bell
Journal:  Mol Cell Biol       Date:  1997-12       Impact factor: 4.272

8.  Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism.

Authors:  Xin Liu; David A Bushnell; Dong Wang; Guillermo Calero; Roger D Kornberg
Journal:  Science       Date:  2009-11-12       Impact factor: 47.728

9.  A cytokinetic function of Drosophila ORC6 protein resides in a domain distinct from its replication activity.

Authors:  Igor N Chesnokov; Olga N Chesnokova; Michael Botchan
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-23       Impact factor: 11.205

10.  Multiple mechanisms contribute to Schizosaccharomyces pombe origin recognition complex-DNA interactions.

Authors:  Christopher R Houchens; Wenyan Lu; Ray-Yuan Chuang; Mark G Frattini; Alex Fuller; Pam Simancek; Thomas J Kelly
Journal:  J Biol Chem       Date:  2008-08-22       Impact factor: 5.157

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  36 in total

1.  Prereplication-complex formation: a molecular double take?

Authors:  Hasan Yardimci; Johannes C Walter
Journal:  Nat Struct Mol Biol       Date:  2014-01       Impact factor: 15.369

2.  Collective helicity switching of a DNA-coat assembly.

Authors:  Yongju Kim; Huichang Li; Ying He; Xi Chen; Xiaoteng Ma; Myongsoo Lee
Journal:  Nat Nanotechnol       Date:  2017-03-27       Impact factor: 39.213

Review 3.  Mechanisms and regulation of DNA replication initiation in eukaryotes.

Authors:  Matthew W Parker; Michael R Botchan; James M Berger
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-01-17       Impact factor: 8.250

Review 4.  Helicase loading at chromosomal origins of replication.

Authors:  Stephen P Bell; Jon M Kaguni
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-06-01       Impact factor: 10.005

5.  The interaction networks of the budding yeast and human DNA replication-initiation proteins.

Authors:  Rentian Wu; Aftab Amin; Ziyi Wang; Yining Huang; Marco Man-Hei Cheung; Zhiling Yu; Wei Yang; Chun Liang
Journal:  Cell Cycle       Date:  2019-03-19       Impact factor: 4.534

Review 6.  Cryo-EM of dynamic protein complexes in eukaryotic DNA replication.

Authors:  Jingchuan Sun; Zuanning Yuan; Lin Bai; Huilin Li
Journal:  Protein Sci       Date:  2016-09-14       Impact factor: 6.725

7.  Building the bacterial orisome: high-affinity DnaA recognition plays a role in setting the conformation of oriC DNA.

Authors:  Gulpreet Kaur; Mansi P Vora; Christopher A Czerwonka; Tania A Rozgaja; Julia E Grimwade; Alan C Leonard
Journal:  Mol Microbiol       Date:  2014-02-18       Impact factor: 3.501

8.  Single-molecule studies of origin licensing reveal mechanisms ensuring bidirectional helicase loading.

Authors:  Simina Ticau; Larry J Friedman; Nikola A Ivica; Jeff Gelles; Stephen P Bell
Journal:  Cell       Date:  2015-04-16       Impact factor: 41.582

Review 9.  Mechanisms for initiating cellular DNA replication.

Authors:  Alessandro Costa; Iris V Hood; James M Berger
Journal:  Annu Rev Biochem       Date:  2013       Impact factor: 23.643

Review 10.  The origin recognition complex: a biochemical and structural view.

Authors:  Huilin Li; Bruce Stillman
Journal:  Subcell Biochem       Date:  2012
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