Literature DB >> 23746253

Mechanisms for initiating cellular DNA replication.

Alessandro Costa1, Iris V Hood, James M Berger.   

Abstract

The initiation of DNA replication represents a committing step to cell proliferation. Appropriate replication onset depends on multiprotein complexes that help properly distinguish origin regions, generate nascent replication bubbles, and promote replisome formation. This review describes initiation systems employed by bacteria, archaea, and eukaryotes, with a focus on comparing and contrasting molecular mechanisms among organisms. Although commonalities can be found in the functional domains and strategies used to carry out and regulate initiation, many key participants have markedly different activities and appear to have evolved convergently. Despite significant advances in the field, major questions still persist in understanding how initiation programs are executed at the molecular level.

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Year:  2013        PMID: 23746253      PMCID: PMC4696014          DOI: 10.1146/annurev-biochem-052610-094414

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  296 in total

1.  A rotary pumping model for helicase function of MCM proteins at a distance from replication forks.

Authors:  Ronald A Laskey; Mark A Madine
Journal:  EMBO Rep       Date:  2003-01       Impact factor: 8.807

2.  Biochemical characterization of Cdc6/Orc1 binding to the replication origin of the euryarchaeon Methanothermobacter thermoautotrophicus.

Authors:  Stephanie A Capaldi; James M Berger
Journal:  Nucleic Acids Res       Date:  2004-09-09       Impact factor: 16.971

3.  The structure of a DnaB-family replicative helicase and its interactions with primase.

Authors:  Ganggang Wang; Michael G Klein; Etienne Tokonzaba; Yi Zhang; Lauren G Holden; Xiaojiang S Chen
Journal:  Nat Struct Mol Biol       Date:  2007-12-23       Impact factor: 15.369

4.  Dynamic control of the DNA replication initiation protein DnaA by Soj/ParA.

Authors:  Heath Murray; Jeff Errington
Journal:  Cell       Date:  2008-10-03       Impact factor: 41.582

5.  Mutational analysis of the consensus sequence of a replication origin from yeast chromosome III.

Authors:  J V Van Houten; C S Newlon
Journal:  Mol Cell Biol       Date:  1990-08       Impact factor: 4.272

6.  A structural model for the Escherichia coli DnaB helicase based on electron microscopy data.

Authors:  M C San Martin; N P Stamford; N Dammerova; N E Dixon; J M Carazo
Journal:  J Struct Biol       Date:  1995 May-Jun       Impact factor: 2.867

7.  Complexes at the replication origin of Bacillus subtilis with homologous and heterologous DnaA protein.

Authors:  M Krause; B Rückert; R Lurz; W Messer
Journal:  J Mol Biol       Date:  1997-12-05       Impact factor: 5.469

8.  Molecular determinants of origin discrimination by Orc1 initiators in archaea.

Authors:  Erin C Dueber; Alessandro Costa; Jacob E Corn; Stephen D Bell; James M Berger
Journal:  Nucleic Acids Res       Date:  2011-01-11       Impact factor: 16.971

9.  Escherichia coli replication termination protein impedes the action of helicases.

Authors:  E H Lee; A Kornberg; M Hidaka; T Kobayashi; T Horiuchi
Journal:  Proc Natl Acad Sci U S A       Date:  1989-12       Impact factor: 11.205

10.  The box VII motif of Escherichia coli DnaA protein is required for DnaA oligomerization at the E. coli replication origin.

Authors:  Magdalena M Felczak; Jon M Kaguni
Journal:  J Biol Chem       Date:  2004-09-14       Impact factor: 5.157

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  83 in total

1.  Structure of the eukaryotic MCM complex at 3.8 Å.

Authors:  Ningning Li; Yuanliang Zhai; Yixiao Zhang; Wanqiu Li; Maojun Yang; Jianlin Lei; Bik-Kwoon Tye; Ning Gao
Journal:  Nature       Date:  2015-07-29       Impact factor: 49.962

Review 2.  The cell cycle of archaea.

Authors:  Ann-Christin Lindås; Rolf Bernander
Journal:  Nat Rev Microbiol       Date:  2013-07-29       Impact factor: 60.633

3.  DNA replication initiation in Bacillus subtilis: structural and functional characterization of the essential DnaA-DnaD interaction.

Authors:  Eleyna Martin; Huw E L Williams; Matthaios Pitoulias; Daniel Stevens; Charles Winterhalter; Timothy D Craggs; Heath Murray; Mark S Searle; Panos Soultanas
Journal:  Nucleic Acids Res       Date:  2019-02-28       Impact factor: 16.971

4.  Post-licensing Specification of Eukaryotic Replication Origins by Facilitated Mcm2-7 Sliding along DNA.

Authors:  Julien Gros; Charanya Kumar; Gerard Lynch; Tejas Yadav; Iestyn Whitehouse; Dirk Remus
Journal:  Mol Cell       Date:  2015-11-19       Impact factor: 17.970

5.  Completion of DNA replication in Escherichia coli.

Authors:  Brian M Wendel; Charmain T Courcelle; Justin Courcelle
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-03       Impact factor: 11.205

6.  RecQ4 promotes the conversion of the pre-initiation complex at a site-specific origin for DNA unwinding in Xenopus egg extracts.

Authors:  Yosuke Sanuki; Yumiko Kubota; Masato T Kanemaki; Tatsuro S Takahashi; Satoru Mimura; Haruhiko Takisawa
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

Review 7.  Spatial Organization of Metabolic Enzyme Complexes in Cells.

Authors:  Danielle L Schmitt; Songon An
Journal:  Biochemistry       Date:  2017-06-16       Impact factor: 3.162

Review 8.  Mechanisms and regulation of DNA replication initiation in eukaryotes.

Authors:  Matthew W Parker; Michael R Botchan; James M Berger
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-01-17       Impact factor: 8.250

9.  Near-atomic structural model for bacterial DNA replication initiation complex and its functional insights.

Authors:  Masahiro Shimizu; Yasunori Noguchi; Yukari Sakiyama; Hironori Kawakami; Tsutomu Katayama; Shoji Takada
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-29       Impact factor: 11.205

10.  RecBCD, SbcCD and ExoI process a substrate created by convergent replisomes to complete DNA replication.

Authors:  Nicklas A Hamilton; Brian M Wendel; Emma A Weber; Charmain T Courcelle; Justin Courcelle
Journal:  Mol Microbiol       Date:  2019-05-06       Impact factor: 3.501

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