Literature DB >> 22401134

Mechanism of binding of NO to soluble guanylyl cyclase: implication for the second NO binding to the heme proximal site.

Emil Martin1, Vladimir Berka, Iraida Sharina, Ah-Lim Tsai.   

Abstract

Soluble guanylyl cyclase (sGC), the key enzyme for the formation of second messenger cyclic GMP, is an authentic sensor for nitric oxide (NO). Binding of NO to sGC leads to strong activation of the enzyme activity. Multiple molecules and steps of binding of NO to sGC have been implicated, but the target of the second NO and the detailed binding mechanism remain controversial. In this study, we used (15)NO and (14)NO and anaerobic sequential mixing-freeze-quench electron paramagnetic resonance to unambiguously confirm that the heme Fe is the target of the second NO. The linear dependence on NO concentration up to 600 s(-1) for the observed rate of the second step of NO binding not only indicates that the binding site of the second NO is different from that in the first step, i.e., the proximal site of the heme, but also supports a concerted mechanism in which the dissociation of the His105 proximal ligand occurs simultaneously with the binding of the second NO molecule. Computer modeling successfully predicts the kinetics of formation of a set of five-coordinate NO complexes with the ligand on either the distal or proximal site and supports the selective release of NO from the distal side of the transient bis-NO-sGC complex. Thus, as has been demonstrated with cytochrome c', a five-coordinate NO-sGC complex containing a proximal NO is formed after the binding of the second NO.

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Year:  2012        PMID: 22401134      PMCID: PMC3319481          DOI: 10.1021/bi300105s

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  27 in total

1.  Dynamic ligand exchange in soluble guanylyl cyclase (sGC): implications for sGC regulation and desensitization.

Authors:  Ah-Lim Tsai; Vladimir Berka; Iraida Sharina; Emil Martin
Journal:  J Biol Chem       Date:  2011-10-18       Impact factor: 5.157

2.  Distal-to-proximal NO conversion in hemoproteins: the role of the proximal pocket.

Authors:  Michael A Hough; Svetlana V Antonyuk; Sonia Barbieri; Neil Rustage; Alison L McKay; Amy E Servid; Robert R Eady; Colin R Andrew; S Samar Hasnain
Journal:  J Mol Biol       Date:  2010-11-10       Impact factor: 5.469

Review 3.  Soluble guanylate cyclase.

Authors:  Thomas L Poulos
Journal:  Curr Opin Struct Biol       Date:  2006-10-02       Impact factor: 6.809

4.  Desensitization of soluble guanylyl cyclase, the NO receptor, by S-nitrosylation.

Authors:  Nazish Sayed; Padmamalini Baskaran; Xiaolei Ma; Focco van den Akker; Annie Beuve
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-16       Impact factor: 11.205

5.  Is Nostoc H-NOX a NO sensor or redox switch?

Authors:  Ah-Lim Tsai; Vladimir Berka; Faye Martin; Xiaolei Ma; Focco van den Akker; Marian Fabian; John S Olson
Journal:  Biochemistry       Date:  2010-08-10       Impact factor: 3.162

6.  A "sliding scale rule" for selectivity among NO, CO, and O₂ by heme protein sensors.

Authors:  Ah-Lim Tsai; Vladimir Berka; Emil Martin; John S Olson
Journal:  Biochemistry       Date:  2011-12-13       Impact factor: 3.162

7.  Ligand selectivity of soluble guanylyl cyclase: effect of the hydrogen-bonding tyrosine in the distal heme pocket on binding of oxygen, nitric oxide, and carbon monoxide.

Authors:  Emil Martin; Vladimir Berka; Elena Bogatenkova; Ferid Murad; Ah-Lim Tsai
Journal:  J Biol Chem       Date:  2006-07-24       Impact factor: 5.157

8.  Cyclooxygenase reaction mechanism of prostaglandin H synthase from deuterium kinetic isotope effects.

Authors:  Gang Wu; Jian-Ming Lü; Wilfred A van der Donk; Richard J Kulmacz; Ah-lim Tsai
Journal:  J Inorg Biochem       Date:  2011-03       Impact factor: 4.155

9.  A nitric oxide/cysteine interaction mediates the activation of soluble guanylate cyclase.

Authors:  Nathaniel B Fernhoff; Emily R Derbyshire; Michael A Marletta
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-09       Impact factor: 11.205

Review 10.  Biochemistry of soluble guanylate cyclase.

Authors:  Emily R Derbyshire; Michael A Marletta
Journal:  Handb Exp Pharmacol       Date:  2009
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  31 in total

1.  Motion of proximal histidine and structural allosteric transition in soluble guanylate cyclase.

Authors:  Byung-Kuk Yoo; Isabelle Lamarre; Jean-Louis Martin; Fabrice Rappaport; Michel Negrerie
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-23       Impact factor: 11.205

2.  The Influence of Nitric Oxide on Soluble Guanylate Cyclase Regulation by Nucleotides: ROLE OF THE PSEUDOSYMMETRIC SITE.

Authors:  Nur Başak Sürmeli; Frederike M Müskens; Michael A Marletta
Journal:  J Biol Chem       Date:  2015-04-23       Impact factor: 5.157

3.  Structural insights into the role of iron-histidine bond cleavage in nitric oxide-induced activation of H-NOX gas sensor proteins.

Authors:  Mark A Herzik; Rohan Jonnalagadda; John Kuriyan; Michael A Marletta
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-24       Impact factor: 11.205

4.  Dynamics of the heme-binding bacterial gas-sensing dissimilative nitrate respiration regulator (DNR) and activation barriers for ligand binding and escape.

Authors:  Laura Lobato; Latifa Bouzhir-Sima; Taku Yamashita; Michael T Wilson; Marten H Vos; Ursula Liebl
Journal:  J Biol Chem       Date:  2014-07-18       Impact factor: 5.157

5.  The selectivity of Vibrio cholerae H-NOX for gaseous ligands follows the "sliding scale rule" hypothesis. Ligand interactions with both ferrous and ferric Vc H-NOX.

Authors:  Gang Wu; Wen Liu; Vladimir Berka; Ah-lim Tsai
Journal:  Biochemistry       Date:  2013-12-18       Impact factor: 3.162

6.  Hydrogen bonding of the dissociated histidine ligand is not required for formation of a proximal NO adduct in cytochrome c'.

Authors:  Dlzar D Ghafoor; Demet Kekilli; Gaylany H Abdullah; Florian S N Dworkowski; Hamid G Hassan; Michael T Wilson; Richard W Strange; Michael A Hough
Journal:  J Biol Inorg Chem       Date:  2015-06-23       Impact factor: 3.358

7.  Gaseous ligand selectivity of the H-NOX sensor protein from Shewanella oneidensis and comparison to those of other bacterial H-NOXs and soluble guanylyl cyclase.

Authors:  Gang Wu; Wen Liu; Vladimir Berka; Ah-Lim Tsai
Journal:  Biochimie       Date:  2017-06-26       Impact factor: 4.079

8.  Spectral Characterization of a Novel NO Sensing Protein in Bacteria: NosP.

Authors:  Bezalel A Bacon; Yilin Liu; James R Kincaid; Elizabeth M Boon
Journal:  Biochemistry       Date:  2018-10-16       Impact factor: 3.162

9.  H-NOX from Clostridium botulinum, like H-NOX from Thermoanaerobacter tengcongensis, Binds Oxygen but with a Less Stable Oxyferrous Heme Intermediate.

Authors:  Gang Wu; Wen Liu; Vladimir Berka; Ah-Lim Tsai
Journal:  Biochemistry       Date:  2015-11-25       Impact factor: 3.162

10.  Insights into BAY 60-2770 activation and S-nitrosylation-dependent desensitization of soluble guanylyl cyclase via crystal structures of homologous nostoc H-NOX domain complexes.

Authors:  Vijay Kumar; Faye Martin; Michael G Hahn; Martina Schaefer; Jonathan S Stamler; Johannes-Peter Stasch; Focco van den Akker
Journal:  Biochemistry       Date:  2013-05-07       Impact factor: 3.162

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