Literature DB >> 26100643

Hydrogen bonding of the dissociated histidine ligand is not required for formation of a proximal NO adduct in cytochrome c'.

Dlzar D Ghafoor1, Demet Kekilli, Gaylany H Abdullah, Florian S N Dworkowski, Hamid G Hassan, Michael T Wilson, Richard W Strange, Michael A Hough.   

Abstract

Cytochromes c', that occur in methanotrophic, denitrifying and photosynthetic bacteria, form unusual proximal penta-coordinate NO complexes via a hexa-coordinate distal NO intermediate. Their NO binding properties are similar to those of the eukaryotic NO sensor, soluble guanylate cyclase, for which they provide a valuable structural model. Previous studies suggested that hydrogen bonding between the displaced proximal histidine (His120) ligand (following its dissociation from heme due to trans effects from the distally bound NO) and a conserved aspartate residue (Asp121) could play a key role in allowing proximal NO binding to occur. We have characterized three variants of Alcaligenes xylosoxidans cytochrome c' (AXCP) where Asp121 has been replaced by Ala, Ile and Gln, respectively. In all variants, hydrogen bonding between residue 121 and His120 is abolished yet 5-coordinate proximal NO species are still formed. Our data therefore demonstrate that the His120-Asp121 bond is not essential for proximal NO binding although it likely provides an energy minimum for the displaced His ligand. All variants have altered proximal pocket structure relative to native AXCP.

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Year:  2015        PMID: 26100643     DOI: 10.1007/s00775-015-1278-y

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  27 in total

1.  Mechanism of binding of NO to soluble guanylyl cyclase: implication for the second NO binding to the heme proximal site.

Authors:  Emil Martin; Vladimir Berka; Iraida Sharina; Ah-Lim Tsai
Journal:  Biochemistry       Date:  2012-03-19       Impact factor: 3.162

2.  Resonance Raman studies of cytochrome c' support the binding of NO and CO to opposite sides of the heme: implications for ligand discrimination in heme-based sensors.

Authors:  C R Andrew; E L Green; D M Lawson; R R Eady
Journal:  Biochemistry       Date:  2001-04-03       Impact factor: 3.162

3.  Distal-proximal crosstalk in the heme binding pocket of the NO sensor DNR.

Authors:  Francesca Cutruzzolà; Alessandro Arcovito; Giorgio Giardina; Stefano della Longa; Paola D'Angelo; Serena Rinaldo
Journal:  Biometals       Date:  2014-07-10       Impact factor: 2.949

4.  Conformational control of the binding of diatomic gases to cytochrome c'.

Authors:  Andreea Manole; Demet Kekilli; Dimitri A Svistunenko; Michael T Wilson; Paul S Dobbin; Michael A Hough
Journal:  J Biol Inorg Chem       Date:  2015-03-20       Impact factor: 3.358

5.  Molecular basis for nitric oxide dynamics and affinity with Alcaligenes xylosoxidans cytochrome c.

Authors:  Sergei G Kruglik; Jean-Christophe Lambry; Simona Cianetti; Jean-Louis Martin; Robert R Eady; Colin R Andrew; Michel Negrerie
Journal:  J Biol Chem       Date:  2006-12-11       Impact factor: 5.157

6.  Nitric oxide interaction with cytochrome c' and its relevance to guanylate cyclase. Why does the iron histidine bond break?

Authors:  Marcelo A Martí; Luciana Capece; Alejandro Crespo; Fabio Doctorovich; Dario A Estrin
Journal:  J Am Chem Soc       Date:  2005-06-01       Impact factor: 15.419

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Spectroscopic characterization of nitrosylheme in nitric oxide complexes of ferric and ferrous cytochrome c' from photosynthetic bacteria.

Authors:  T Yoshimura; S Fujii; H Kamada; K Yamaguchi; S Suzuki; S Shidara; S Takakuwa
Journal:  Biochim Biophys Acta       Date:  1996-01-04

9.  NO* binds human cystathionine β-synthase quickly and tightly.

Authors:  João B Vicente; Henrique G Colaço; Marisa I S Mendes; Paolo Sarti; Paula Leandro; Alessandro Giuffrè
Journal:  J Biol Chem       Date:  2014-02-10       Impact factor: 5.157

10.  A new on-axis micro-spectrophotometer for combining Raman, fluorescence and UV/Vis absorption spectroscopy with macromolecular crystallography at the Swiss Light Source.

Authors:  Guillaume Pompidor; Florian S N Dworkowski; Vincent Thominet; Clemens Schulze-Briese; Martin R Fuchs
Journal:  J Synchrotron Radiat       Date:  2013-07-05       Impact factor: 2.616

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