Literature DB >> 22394678

Imprinting control region (ICR) of the Peg3 domain.

Joomyeong Kim1, Muhammad B Ekram, Hana Kim, Mohammad Faisal, Wesley D Frey, Jennifer M Huang, KimNgoc Tran, Michelle M Kim, Sungryul Yu.   

Abstract

The imprinting and transcription of the 500 kb genomic region surrounding the mouse Peg3 is predicted to be regulated by the Peg3-differentially methylated region (DMR). In the current study, this prediction was tested using a mutant mouse line lacking this potential imprinting control region (ICR). At the organismal level, paternal and maternal transmission of this knockout (KO) allele caused either reduced or increased growth rates in the mouse, respectively. In terms of the imprinting control, the paternal transmission of the KO allele resulted in bi-allelic expression of the normally maternally expressed Zim2, whereas the maternal transmission switched the transcriptionally dominant allele for Zfp264 (paternal to maternal). However, the allele-specific DNA methylation patterns of the DMRs of Peg3, Zim2 and Zim3 were not affected in the mice that inherited the KO allele either paternally or maternally. In terms of the transcriptional control, the paternal transmission caused a dramatic down-regulation in Peg3 expression, but overall up-regulation in the other nearby imprinted genes. Taken together, deletion of the Peg3-DMR caused global changes in the imprinting and transcription of the Peg3 domain, confirming that the Peg3-DMR is an ICR for this imprinted domain.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22394678      PMCID: PMC3363340          DOI: 10.1093/hmg/dds092

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  32 in total

1.  Organization and parent-of-origin-specific methylation of imprinted Peg3 gene on mouse proximal chromosome 7.

Authors:  L L Li; I Y Szeto; B M Cattanach; F Ishino; M A Surani
Journal:  Genomics       Date:  2000-02-01       Impact factor: 5.736

2.  Coadaptation in mother and infant regulated by a paternally expressed imprinted gene.

Authors:  James P Curley; Sheila Barton; Azim Surani; Eric B Keverne
Journal:  Proc Biol Sci       Date:  2004-06-22       Impact factor: 5.349

3.  Gene-specific timing and epigenetic memory in oocyte imprinting.

Authors:  Diana Lucifero; Mellissa R W Mann; Marisa S Bartolomei; Jacquetta M Trasler
Journal:  Hum Mol Genet       Date:  2004-03-03       Impact factor: 6.150

4.  Epigenetic silencing of PEG3 gene expression in human glioma cell lines.

Authors:  S Maegawa; H Yoshioka; N Itaba; N Kubota; S Nishihara; Y Shirayoshi; E Nanba; M Oshimura
Journal:  Mol Carcinog       Date:  2001-05       Impact factor: 4.784

5.  Imprinting and evolution of two Kruppel-type zinc-finger genes, ZIM3 and ZNF264, located in the PEG3/USP29 imprinted domain.

Authors:  J Kim; A Bergmann; E Wehri; X Lu; L Stubbs
Journal:  Genomics       Date:  2001-09       Impact factor: 5.736

6.  Methylation dynamics of imprinted genes in mouse germ cells.

Authors:  Diana Lucifero; Carmen Mertineit; Hugh J Clarke; Timothy H Bestor; Jacquetta M Trasler
Journal:  Genomics       Date:  2002-04       Impact factor: 5.736

7.  Lineage-specific imprinting and evolution of the zinc-finger gene ZIM2.

Authors:  Joomyeong Kim; Anne Bergmann; Susan Lucas; Roger Stone; Lisa Stubbs
Journal:  Genomics       Date:  2004-07       Impact factor: 5.736

8.  Methylation-sensitive binding of transcription factor YY1 to an insulator sequence within the paternally expressed imprinted gene, Peg3.

Authors:  Joomyeong Kim; Angela Kollhoff; Anne Bergmann; Lisa Stubbs
Journal:  Hum Mol Genet       Date:  2003-02-01       Impact factor: 6.150

9.  YY1's role in DNA methylation of Peg3 and Xist.

Authors:  Jeong Do Kim; Keunsoo Kang; Joomyeong Kim
Journal:  Nucleic Acids Res       Date:  2009-07-23       Impact factor: 16.971

10.  An ICE pattern crystallizes.

Authors:  Laura Spahn; Denise P Barlow
Journal:  Nat Genet       Date:  2003-09       Impact factor: 38.330

View more
  27 in total

1.  Sexual differences of imprinted genes' expression levels.

Authors:  Mohammad Faisal; Hana Kim; Joomyeong Kim
Journal:  Gene       Date:  2013-10-11       Impact factor: 3.688

2.  Differentially methylated region in bovine MIMT1 detected by small-scale whole-genome methylation sequencing.

Authors:  Karolina Rutkowska; Hongen Xu; Krzysztof Flisikowski
Journal:  J Appl Genet       Date:  2019-08-30       Impact factor: 3.240

3.  A mouse model of Angelman syndrome imprinting defects.

Authors:  Michael W Lewis; Dorianmarie Vargas-Franco; Deborah A Morse; James L Resnick
Journal:  Hum Mol Genet       Date:  2019-01-15       Impact factor: 6.150

4.  Transcription-driven DNA methylation setting on the mouse Peg3 locus.

Authors:  Corey L Bretz; Joomyeong Kim
Journal:  Epigenetics       Date:  2017-11-10       Impact factor: 4.528

Review 5.  Role of genomic imprinting in mammalian development.

Authors:  Thushara Thamban; Viplove Agarwaal; Sanjeev Khosla
Journal:  J Biosci       Date:  2020       Impact factor: 1.826

6.  Genomic imprinting is variably lost during reprogramming of mouse iPS cells.

Authors:  Sachiko Takikawa; Chelsea Ray; Xin Wang; Yulia Shamis; Tien-Yuan Wu; Xiajun Li
Journal:  Stem Cell Res       Date:  2013-06-01       Impact factor: 2.020

7.  APeg3: regulation of Peg3 through an evolutionarily conserved ncRNA.

Authors:  Wesley D Frey; Joomyeong Kim
Journal:  Gene       Date:  2014-02-28       Impact factor: 3.688

8.  DNA-binding motif and target genes of the imprinted transcription factor PEG3.

Authors:  Michelle M Thiaville; Jennifer M Huang; Hana Kim; Muhammad B Ekram; Tae-Young Roh; Joomyeong Kim
Journal:  Gene       Date:  2012-10-16       Impact factor: 3.688

9.  Peg3 mutational effects on reproduction and placenta-specific gene families.

Authors:  Joomyeong Kim; Wesley D Frey; Hongzhi He; Hana Kim; Muhammad B Ekram; Arundhati Bakshi; Mohammad Faisal; Bambarendage P U Perera; An Ye; Ryoichi Teruyama
Journal:  PLoS One       Date:  2013-12-31       Impact factor: 3.240

10.  Identification of an evolutionarily conserved cis-regulatory element controlling the Peg3 imprinted domain.

Authors:  Michelle M Thiaville; Hana Kim; Wesley D Frey; Joomyeong Kim
Journal:  PLoS One       Date:  2013-09-10       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.