Literature DB >> 12786045

Counterion distribution around DNA probed by solution X-ray scattering.

R Das1, T T Mills, L W Kwok, G S Maskel, I S Millett, S Doniach, K D Finkelstein, D Herschlag, L Pollack.   

Abstract

Counterion atmospheres condensed onto charged biopolymers strongly affect their physical properties and biological functions, but have been difficult to quantify experimentally. Here, monovalent and divalent counterion atmospheres around DNA double helices in solution are probed using small-angle x-ray scattering techniques. Modulation of the ion scattering factors by anomalous (resonant) x-ray scattering and by interchanging ion identities yields direct measurements of the scattering signal due to the spatial correlation of surrounding ions to the DNA. The quality of the data permit, for the first time, quantitative tests of extended counterion distributions calculated from atomic-scale models of biologically relevant molecules.

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Year:  2003        PMID: 12786045     DOI: 10.1103/PhysRevLett.90.188103

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  66 in total

Review 1.  A guide to ions and RNA structure.

Authors:  David E Draper
Journal:  RNA       Date:  2004-03       Impact factor: 4.942

2.  Adsorption of divalent cations on DNA.

Authors:  Isabelle Morfin; Ferenc Horkay; Peter J Basser; Françoise Bley; Anne-Marie Hecht; Cyrille Rochas; Erik Geissler
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

3.  Visualizing large RNA molecules in solution.

Authors:  Ajaykumar Gopal; Z Hong Zhou; Charles M Knobler; William M Gelbart
Journal:  RNA       Date:  2011-12-21       Impact factor: 4.942

4.  Multi-wavelength anomalous diffraction using medium-angle X-ray solution scattering (MADMAX).

Authors:  L Makowski; J Bardhan; D Gore; D J Rodi; R F Fischetti
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

5.  Comparing the Predictions of the Nonlinear Poisson-Boltzmann Equation and the Ion Size-Modified Poisson-Boltzmann Equation for a Low-Dielectric Charged Spherical Cavity in an Aqueous Salt Solution.

Authors:  Alexander R J Silalahi; Alexander H Boschitsch; Robert C Harris; Marcia O Fenley
Journal:  J Chem Theory Comput       Date:  2010-11-19       Impact factor: 6.006

6.  Dielectric control of counterion-induced single-chain folding transition of DNA.

Authors:  Damien Baigl; Kenichi Yoshikawa
Journal:  Biophys J       Date:  2005-03-04       Impact factor: 4.033

7.  Mono- and trivalent ions around DNA: a small-angle scattering study of competition and interactions.

Authors:  Kurt Andresen; Xiangyun Qiu; Suzette A Pabit; Jessica S Lamb; Hye Yoon Park; Lisa W Kwok; Lois Pollack
Journal:  Biophys J       Date:  2008-03-13       Impact factor: 4.033

8.  Closing the lid on DNA end-to-end stacking interactions.

Authors:  Li Li; Suzette A Pabit; Jessica S Lamb; Hye Yoon Park; Lois Pollack
Journal:  Appl Phys Lett       Date:  2008-06-02       Impact factor: 3.791

9.  Sequence-dependent DNA condensation as a driving force of DNA phase separation.

Authors:  Hyunju Kang; Jejoong Yoo; Byeong-Kwon Sohn; Seung-Won Lee; Hong Soo Lee; Wenjie Ma; Jung-Min Kee; Aleksei Aksimentiev; Hajin Kim
Journal:  Nucleic Acids Res       Date:  2018-10-12       Impact factor: 16.971

10.  Quantitative and comprehensive decomposition of the ion atmosphere around nucleic acids.

Authors:  Yu Bai; Max Greenfeld; Kevin J Travers; Vincent B Chu; Jan Lipfert; Sebastian Doniach; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2007-11-09       Impact factor: 15.419

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