Literature DB >> 22368439

Functional Information: Towards Synthesis of Biosemiotics and Cybernetics.

Alexei A Sharov1.   

Abstract

Biosemiotics and cybernetics are closely related, yet they are separated by the boundary between life and non-life: biosemiotics is focused on living organisms, whereas cybernetics is applied mostly to non-living artificial devices. However, both classes of systems are agents that perform functions necessary for reaching their goals. I propose to shift the focus of biosemiotics from living organisms to agents in general, which all belong to a pragmasphere or functional universe. Agents should be considered in the context of their hierarchy and origin because their semiosis can be inherited or induced by higher-level agents. To preserve and disseminate their functions, agents use functional information - a set of signs that encode and control their functions. It includes stable memory signs, transient messengers, and natural signs. The origin and evolution of functional information is discussed in terms of transitions between vegetative, animal, and social levels of semiosis, defined by Kull. Vegetative semiosis differs substantially from higher levels of semiosis, because signs are recognized and interpreted via direct code-based matching and are not associated with ideal representations of objects. Thus, I consider a separate classification of signs at the vegetative level that includes proto-icons, proto-indexes, and proto-symbols. Animal and social semiosis are based on classification, and modeling of objects, which represent the knowledge of agents about their body (Innenwelt) and environment (Umwelt).

Entities:  

Year:  2010        PMID: 22368439      PMCID: PMC3285384          DOI: 10.3390/e12051050

Source DB:  PubMed          Journal:  Entropy (Basel)        ISSN: 1099-4300            Impact factor:   2.524


  14 in total

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3.  The evolution of information storage and heredity.

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4.  Autocatalytic sets of proteins.

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5.  Evolving cell models for systems and synthetic biology.

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Journal:  Nucleic Acids Res       Date:  2004-06-24       Impact factor: 16.971

7.  Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.

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Journal:  Science       Date:  2008-01-24       Impact factor: 47.728

8.  Role of Utility and Inference in the Evolution of Functional Information.

Authors:  Alexei A Sharov
Journal:  Biosemiotics       Date:  2009-04-01       Impact factor: 0.711

9.  Coenzyme autocatalytic network on the surface of oil microspheres as a model for the origin of life.

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Journal:  Int J Mol Sci       Date:  2009-04-22       Impact factor: 6.208

10.  The Gene Ontology project in 2008.

Authors: 
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  9 in total

1.  Protosemiosis: agency with reduced representation capacity.

Authors:  Alexei A Sharov; Tommi Vehkavaara
Journal:  Biosemiotics       Date:  2015-04-01       Impact factor: 0.711

2.  Arbitrariness is not enough: towards a functional approach to the genetic code.

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Journal:  Theory Biosci       Date:  2017-05-09       Impact factor: 1.919

3.  Semantic information, autonomous agency and non-equilibrium statistical physics.

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Journal:  Interface Focus       Date:  2018-10-19       Impact factor: 3.906

4.  Evolutionary constraints or opportunities?

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Journal:  Biosystems       Date:  2014-04-22       Impact factor: 1.973

5.  Evolutionary biosemiotics and multilevel construction networks.

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Journal:  Biosemiotics       Date:  2016-08-16       Impact factor: 0.711

6.  Composite Agency: Semiotics of Modularity and Guiding Interactions.

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Journal:  Biosemiotics       Date:  2017-07-27       Impact factor: 0.711

7.  Evolution of natural agents: preservation, advance, and emergence of functional information.

Authors:  Alexei A Sharov
Journal:  Biosemiotics       Date:  2016-04       Impact factor: 0.711

Review 8.  Redundancy of the genetic code enables translational pausing.

Authors:  David J D'Onofrio; David L Abel
Journal:  Front Genet       Date:  2014-05-20       Impact factor: 4.599

9.  The Informational Substrate of Chemical Evolution: Implications for Abiogenesis.

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Journal:  Life (Basel)       Date:  2019-08-08
  9 in total

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