Literature DB >> 22365741

Biological robustness and the role of microRNAs: a network perspective.

Nicolás Peláez1, Richard W Carthew.   

Abstract

Over the past decade, microRNA molecules have emerged as critical regulators in the expression and function of animal genomes. This review discusses the relationship between microRNA-mediated regulation and the robustness of biochemical networks that contain microRNAs. Most biochemical networks are robust; they are relatively insensitive to the precise values of reaction constants and concentrations of molecules acting within the network. MicroRNAs involved in network robustness may appear to be nonessential under favourable uniform conditions used in conventional laboratory experiments. However, the function of these molecules can be revealed under environmental and genetic perturbations. Recent advances have revealed unexpected features of microRNA organization in networks that help explain their promotion of robustness. Copyright Â
© 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22365741      PMCID: PMC3746555          DOI: 10.1016/B978-0-12-387038-4.00009-4

Source DB:  PubMed          Journal:  Curr Top Dev Biol        ISSN: 0070-2153            Impact factor:   4.897


  60 in total

1.  Network motifs: simple building blocks of complex networks.

Authors:  R Milo; S Shen-Orr; S Itzkovitz; N Kashtan; D Chklovskii; U Alon
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

Review 2.  Modeling bistable cell-fate choices in the Drosophila eye: qualitative and quantitative perspectives.

Authors:  Thomas G W Graham; S M Ali Tabei; Aaron R Dinner; Ilaria Rebay
Journal:  Development       Date:  2010-07       Impact factor: 6.868

3.  MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision.

Authors:  Robert J Johnston; Sarah Chang; John F Etchberger; Christopher O Ortiz; Oliver Hobert
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-12       Impact factor: 11.205

4.  MicroRNAs preferentially target the genes with high transcriptional regulation complexity.

Authors:  Qinghua Cui; Zhenbao Yu; Youlian Pan; Enrico O Purisima; Edwin Wang
Journal:  Biochem Biophys Res Commun       Date:  2006-11-27       Impact factor: 3.575

Review 5.  Canalization of development by microRNAs.

Authors:  Eran Hornstein; Noam Shomron
Journal:  Nat Genet       Date:  2006-06       Impact factor: 38.330

6.  A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis.

Authors:  Francesco Fazi; Alessandro Rosa; Alessandro Fatica; Vania Gelmetti; Maria Laura De Marchis; Clara Nervi; Irene Bozzoni
Journal:  Cell       Date:  2005-12-02       Impact factor: 41.582

7.  Characterization of microRNA-regulated protein-protein interaction network.

Authors:  Chun-Wei Hsu; Hsueh-Fen Juan; Hsuan-Cheng Huang
Journal:  Proteomics       Date:  2008-05       Impact factor: 3.984

8.  c-Myc-regulated microRNAs modulate E2F1 expression.

Authors:  Kathryn A O'Donnell; Erik A Wentzel; Karen I Zeller; Chi V Dang; Joshua T Mendell
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

Review 9.  MicroRNA control of signal transduction.

Authors:  Masafumi Inui; Graziano Martello; Stefano Piccolo
Journal:  Nat Rev Mol Cell Biol       Date:  2010-03-10       Impact factor: 94.444

10.  The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics.

Authors:  Haiyuan Yu; Philip M Kim; Emmett Sprecher; Valery Trifonov; Mark Gerstein
Journal:  PLoS Comput Biol       Date:  2007-02-14       Impact factor: 4.475

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  49 in total

Review 1.  Mechanistic Insights into MicroRNA-Mediated Gene Silencing.

Authors:  Thomas F Duchaine; Marc R Fabian
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-03-01       Impact factor: 10.005

2.  Detection of miRNA Targets in High-throughput Using the 3'LIFE Assay.

Authors:  Justin M Wolter; Kasuen Kotagama; Cody S Babb; Marco Mangone
Journal:  J Vis Exp       Date:  2015-05-25       Impact factor: 1.355

3.  On the Nature and Evolutionary Impact of Phenotypic Robustness Mechanisms.

Authors:  Mark L Siegal; Jun-Yi Leu
Journal:  Annu Rev Ecol Evol Syst       Date:  2014-11-01       Impact factor: 13.915

4.  Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals.

Authors:  Katsutomo Okamura; Erik Ladewig; Li Zhou; Eric C Lai
Journal:  Genes Dev       Date:  2013-03-27       Impact factor: 11.361

Review 5.  Not miR-ly micromanagers: the functions and regulatory networks of microRNAs in mammalian skin.

Authors:  Kent Riemondy; Jaimee E Hoefert; Rui Yi
Journal:  Wiley Interdiscip Rev RNA       Date:  2014-07-09       Impact factor: 9.957

Review 6.  miRNAs at the interface of cellular stress and disease.

Authors:  Anna Emde; Eran Hornstein
Journal:  EMBO J       Date:  2014-05-27       Impact factor: 11.598

7.  MicroRNA Signature of Cigarette Smoking and Evidence for a Putative Causal Role of MicroRNAs in Smoking-Related Inflammation and Target Organ Damage.

Authors:  Christine M Willinger; Jian Rong; Kahraman Tanriverdi; Paul L Courchesne; Tianxiao Huan; Gregory A Wasserman; Honghuang Lin; Josée Dupuis; Roby Joehanes; Matthew R Jones; George Chen; Emelia J Benjamin; George T O'Connor; Joseph P Mizgerd; Jane E Freedman; Martin G Larson; Daniel Levy
Journal:  Circ Cardiovasc Genet       Date:  2017-10

8.  MicroRNA-276a functions in ellipsoid body and mushroom body neurons for naive and conditioned olfactory avoidance in Drosophila.

Authors:  Wanhe Li; Michael Cressy; Hongtao Qin; Tudor Fulga; David Van Vactor; Josh Dubnau
Journal:  J Neurosci       Date:  2013-03-27       Impact factor: 6.167

Review 9.  MicroRNAs shape the neuronal landscape.

Authors:  Elizabeth McNeill; David Van Vactor
Journal:  Neuron       Date:  2012-08-09       Impact factor: 17.173

10.  Dysregulated miRNA biogenesis downstream of cellular stress and ALS-causing mutations: a new mechanism for ALS.

Authors:  Anna Emde; Chen Eitan; Lee-Loung Liou; Ryan T Libby; Natali Rivkin; Iddo Magen; Irit Reichenstein; Hagar Oppenheim; Raya Eilam; Aurelio Silvestroni; Betty Alajajian; Iddo Z Ben-Dov; Julianne Aebischer; Alon Savidor; Yishai Levin; Robert Sons; Scott M Hammond; John M Ravits; Thomas Möller; Eran Hornstein
Journal:  EMBO J       Date:  2015-09-01       Impact factor: 11.598

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