Literature DB >> 11350942

Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.

A Becskei1, B Séraphin, L Serrano.   

Abstract

Feedback is a ubiquitous control mechanism of gene networks. Here, we have used positive feedback to construct a synthetic eukaryotic gene switch in Saccharomyces cerevisiae. Within this system, a continuous gradient of constitutively expressed transcriptional activator is translated into a cell phenotype switch when the activator is expressed autocatalytically. This finding is consistent with a mathematical model whose analysis shows that continuous input parameters are converted into a bimodal probability distribution by positive feedback, and that this resembles analog-digital conversion. The autocatalytic switch is a robust property in eukaryotic gene expression. Although the behavior of individual cells within a population is random, the proportion of the cell population displaying either low or high expression states can be regulated. These results have implications for understanding the graded and probabilistic mechanisms of enhancer action and cell differentiation.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11350942      PMCID: PMC125456          DOI: 10.1093/emboj/20.10.2528

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  32 in total

1.  Enhancement of beta-globin locus control region-mediated transactivation by mitogen-activated protein kinases through stochastic and graded mechanisms.

Authors:  E C Forsberg; T N Zaboikina; W K Versaw; N G Ahn; E H Bresnick
Journal:  Mol Cell Biol       Date:  1999-08       Impact factor: 4.272

Review 2.  Fundamentally different logic of gene regulation in eukaryotes and prokaryotes.

Authors:  K Struhl
Journal:  Cell       Date:  1999-07-09       Impact factor: 41.582

3.  Construction of a genetic toggle switch in Escherichia coli.

Authors:  T S Gardner; C R Cantor; J J Collins
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

Review 4.  To be or not to be active: the stochastic nature of enhancer action.

Authors:  S Fiering; E Whitelaw; D I Martin
Journal:  Bioessays       Date:  2000-04       Impact factor: 4.345

Review 5.  Probability in transcriptional regulation and its implications for leukocyte differentiation and inducible gene expression.

Authors:  D A Hume
Journal:  Blood       Date:  2000-10-01       Impact factor: 22.113

6.  From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli.

Authors:  D Thieffry; A M Huerta; E Pérez-Rueda; J Collado-Vides
Journal:  Bioessays       Date:  1998-05       Impact factor: 4.345

Review 7.  Autoregulation of eukaryotic transcription factors.

Authors:  E Bateman
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1998

8.  Model genetic circuits encoding autoregulatory transcription factors.

Authors:  A D Keller
Journal:  J Theor Biol       Date:  1995-01-21       Impact factor: 2.691

9.  Efficient transgene regulation from a single tetracycline-controlled positive feedback regulatory system.

Authors:  S A-Mohammadi; R E Hawkins
Journal:  Gene Ther       Date:  1998-01       Impact factor: 5.250

10.  The dose dependence of glucocorticoid-inducible gene expression results from changes in the number of transcriptionally active templates.

Authors:  M S Ko; H Nakauchi; N Takahashi
Journal:  EMBO J       Date:  1990-09       Impact factor: 11.598

View more
  234 in total

Review 1.  Triggering the all-or-nothing switch into mitosis.

Authors:  P H O'Farrell
Journal:  Trends Cell Biol       Date:  2001-12       Impact factor: 20.808

2.  Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.

Authors:  T B Kepler; T C Elston
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

3.  Design then mutate.

Authors:  Jeff Hasty
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-16       Impact factor: 11.205

4.  Missense mutation in the PAS2 domain of phytochrome A impairs subnuclear localization and a subset of responses.

Authors:  Marcelo J Yanovsky; Juan Pablo Luppi; Daniel Kirchbauer; Ouliana B Ogorodnikova; Vitally A Sineshchekov; Eva Adam; Stefan Kircher; Roberto J Staneloni; Eberhard Schäfer; Ferenc Nagy; Jorge J Casal
Journal:  Plant Cell       Date:  2002-07       Impact factor: 11.277

5.  Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems.

Authors:  David Angeli; James E Ferrell; Eduardo D Sontag
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-06       Impact factor: 11.205

6.  Prediction and measurement of an autoregulatory genetic module.

Authors:  Farren J Isaacs; Jeff Hasty; Charles R Cantor; J J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-13       Impact factor: 11.205

7.  Principles of cell-free genetic circuit assembly.

Authors:  Vincent Noireaux; Roy Bar-Ziv; Albert Libchaber
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-14       Impact factor: 11.205

8.  Structure and function of the feed-forward loop network motif.

Authors:  S Mangan; U Alon
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-06       Impact factor: 11.205

9.  Programmable cells: interfacing natural and engineered gene networks.

Authors:  Hideki Kobayashi; Mads Kaern; Michihiro Araki; Kristy Chung; Timothy S Gardner; Charles R Cantor; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

10.  Robust, tunable genetic memory from protein sequestration combined with positive feedback.

Authors:  Tatenda Shopera; William R Henson; Andrew Ng; Young Je Lee; Kenneth Ng; Tae Seok Moon
Journal:  Nucleic Acids Res       Date:  2015-09-17       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.