Literature DB >> 22346949

N'-[(1E)-(4-Fluoro-phen-yl)methyl-idene]thio-phene-2-carbohydrazide.

Amer M Alanazi, Siham Lahsasni, Ali A El-Emam, Seik Weng Ng.   

Abstract

In the title compound, C(12)H(9)FN(2)OS, the thienyl ring is disordered over two positions, with the S atom of the major component [occupancy = 87.08 (16)°] oriented towards the ortho-H atom of the benzene ring. The mol-ecule is nearly planar, the dihedral angle between the thio-phene and benzene rings being 13.0 (2)° in the major component. The azomethine C=N double bond in the mol-ecule is of an E configuration. In the crystal, mol-ecules are linked by pairs of N-H⋯O hydrogen bonds, forming inversion dimers.

Entities:  

Year:  2012        PMID: 22346949      PMCID: PMC3275004          DOI: 10.1107/S1600536811056121

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the 4-chloro and 4-bromo derivatives, see: Jiang (2010a ▶,b ▶).

Experimental

Crystal data

C12H9FN2OS M = 248.27 Monoclinic, a = 13.3076 (11) Å b = 5.6015 (4) Å c = 15.3062 (12) Å β = 104.166 (9)° V = 1106.27 (15) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 100 K 0.35 × 0.15 × 0.05 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.906, T max = 0.986 4609 measured reflections 2532 independent reflections 1917 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.108 S = 1.06 2532 reflections 171 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811056121/xu5417sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811056121/xu5417Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H9FN2OSF(000) = 512
Mr = 248.27Dx = 1.491 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1715 reflections
a = 13.3076 (11) Åθ = 2.7–27.5°
b = 5.6015 (4) ŵ = 0.29 mm1
c = 15.3062 (12) ÅT = 100 K
β = 104.166 (9)°Prism, colorless
V = 1106.27 (15) Å30.35 × 0.15 × 0.05 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector2532 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1917 reflections with I > 2σ(I)
MirrorRint = 0.037
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.7°
ω scanh = −13→17
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −7→4
Tmin = 0.906, Tmax = 0.986l = −19→11
4609 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0425P)2 + 0.113P] where P = (Fo2 + 2Fc2)/3
2532 reflections(Δ/σ)max = 0.001
171 parametersΔρmax = 0.30 e Å3
5 restraintsΔρmin = −0.28 e Å3
xyzUiso*/UeqOcc. (<1)
S10.72252 (5)0.67192 (12)0.49050 (4)0.01785 (19)0.8708 (16)
S1'0.5631 (6)0.5848 (19)0.3160 (5)0.0218 (7)0.1292 (16)
F11.06801 (9)0.4889 (2)0.93514 (8)0.0291 (3)
O10.49118 (10)0.2092 (2)0.40405 (9)0.0203 (3)
N10.60280 (12)0.2114 (3)0.54014 (11)0.0181 (4)
N20.68783 (12)0.3050 (3)0.59944 (11)0.0164 (4)
C10.7215 (3)0.8617 (10)0.4025 (4)0.0181 (7)0.8708 (16)
H1A0.76750.99280.40550.022*0.8708 (16)
C20.6467 (8)0.8018 (16)0.3276 (5)0.0203 (9)0.8708 (16)
H20.63470.88630.27220.024*0.8708 (16)
C30.5900 (3)0.6034 (9)0.3415 (3)0.0218 (7)0.8708 (16)
H30.53540.53810.29580.026*0.8708 (16)
C1'0.642 (6)0.827 (12)0.318 (4)0.0203 (9)0.13
H1'0.64420.92980.26910.024*0.1292 (16)
C2'0.702 (3)0.842 (8)0.404 (3)0.0181 (7)0.13
H2'0.75000.96900.42050.022*0.1292 (16)
C3'0.6923 (14)0.671 (3)0.4673 (13)0.01785 (19)0.13
H3'0.73020.66790.52860.021*0.1292 (16)
C40.61940 (14)0.5099 (3)0.42645 (12)0.0166 (4)
C50.56736 (14)0.3024 (3)0.45575 (13)0.0165 (4)
C60.71912 (15)0.1929 (3)0.67428 (13)0.0169 (4)
H60.68360.05340.68540.020*
C70.80912 (14)0.2777 (3)0.74281 (12)0.0162 (4)
C80.84780 (15)0.1384 (3)0.81905 (13)0.0188 (4)
H80.8139−0.00680.82640.023*
C90.93487 (16)0.2074 (3)0.88442 (13)0.0227 (5)
H90.96130.11120.93600.027*
C100.98170 (15)0.4193 (4)0.87216 (13)0.0199 (4)
C110.94486 (15)0.5653 (3)0.79870 (13)0.0181 (4)
H110.97830.71210.79260.022*
C120.85802 (14)0.4930 (3)0.73393 (12)0.0166 (4)
H120.83160.59130.68290.020*
H10.5728 (17)0.078 (4)0.5544 (15)0.035 (7)*
U11U22U33U12U13U23
S10.0196 (4)0.0175 (3)0.0169 (4)−0.0051 (3)0.0053 (2)−0.0012 (2)
S1'0.010 (2)0.0290 (13)0.025 (2)−0.0022 (16)0.0011 (14)0.0011 (18)
F10.0230 (6)0.0378 (7)0.0222 (7)−0.0021 (6)−0.0027 (5)−0.0023 (6)
O10.0173 (7)0.0236 (7)0.0197 (7)−0.0040 (6)0.0037 (6)−0.0009 (6)
N10.0172 (8)0.0194 (9)0.0174 (9)−0.0056 (7)0.0035 (7)−0.0015 (7)
N20.0146 (8)0.0165 (8)0.0185 (9)−0.0005 (7)0.0048 (7)−0.0025 (6)
C10.015 (2)0.0156 (15)0.0255 (11)−0.0038 (15)0.0096 (15)0.0012 (9)
C20.0175 (15)0.022 (3)0.023 (2)0.004 (2)0.0069 (15)0.0076 (13)
C30.010 (2)0.0290 (13)0.025 (2)−0.0022 (16)0.0011 (14)0.0011 (18)
C1'0.0175 (15)0.022 (3)0.023 (2)0.004 (2)0.0069 (15)0.0076 (13)
C2'0.015 (2)0.0156 (15)0.0255 (11)−0.0038 (15)0.0096 (15)0.0012 (9)
C3'0.0196 (4)0.0175 (3)0.0169 (4)−0.0051 (3)0.0053 (2)−0.0012 (2)
C40.0148 (9)0.0168 (9)0.0192 (10)0.0011 (8)0.0058 (8)−0.0020 (8)
C50.0151 (9)0.0186 (10)0.0169 (10)0.0012 (8)0.0062 (8)−0.0030 (8)
C60.0176 (10)0.0153 (9)0.0195 (10)−0.0010 (8)0.0077 (8)0.0006 (8)
C70.0181 (10)0.0168 (9)0.0159 (9)0.0017 (8)0.0084 (8)−0.0005 (7)
C80.0225 (10)0.0151 (9)0.0204 (10)−0.0016 (8)0.0082 (9)0.0013 (8)
C90.0280 (11)0.0218 (10)0.0174 (10)0.0058 (9)0.0036 (9)0.0040 (8)
C100.0161 (9)0.0268 (11)0.0162 (10)0.0004 (9)0.0030 (8)−0.0043 (8)
C110.0200 (10)0.0166 (10)0.0195 (10)−0.0013 (8)0.0083 (9)−0.0014 (8)
C120.0177 (10)0.0177 (9)0.0151 (9)0.0034 (8)0.0055 (8)0.0013 (8)
S1—C11.714 (4)C2'—C3'1.389 (11)
S1—C41.7346 (19)C2'—H2'0.9500
S1'—C1'1.713 (11)C3'—C41.361 (10)
S1'—C41.725 (6)C3'—H3'0.9500
F1—C101.363 (2)C4—C51.478 (3)
O1—C51.238 (2)C6—C71.465 (3)
N1—C51.361 (2)C6—H60.9500
N1—N21.370 (2)C7—C121.392 (3)
N1—H10.90 (2)C7—C81.394 (3)
N2—C61.283 (2)C8—C91.388 (3)
C1—C21.363 (3)C8—H80.9500
C1—H1A0.9500C9—C101.374 (3)
C2—C31.388 (5)C9—H90.9500
C2—H20.9500C10—C111.380 (3)
C3—C41.367 (4)C11—C121.386 (3)
C3—H30.9500C11—H110.9500
C1'—C2'1.362 (10)C12—H120.9500
C1'—H1'0.9500
C1—S1—C491.55 (18)C5—C4—S1'111.4 (3)
C1'—S1'—C493.3 (15)C3—C4—S1109.9 (2)
C5—N1—N2121.58 (17)C5—C4—S1127.20 (14)
C5—N1—H1118.1 (14)O1—C5—N1119.21 (18)
N2—N1—H1120.0 (14)O1—C5—C4120.57 (17)
C6—N2—N1116.04 (16)N1—C5—C4120.22 (17)
C2—C1—S1111.8 (3)N2—C6—C7120.68 (17)
C2—C1—H1A124.1N2—C6—H6119.7
S1—C1—H1A124.1C7—C6—H6119.7
C1—C2—C3112.4 (4)C12—C7—C8118.76 (18)
C1—C2—H2123.8C12—C7—C6122.06 (17)
C3—C2—H2123.8C8—C7—C6119.18 (17)
C4—C3—C2114.3 (3)C9—C8—C7121.31 (18)
C4—C3—H3122.8C9—C8—H8119.3
C2—C3—H3122.8C7—C8—H8119.3
C2'—C1'—S1'106 (3)C10—C9—C8117.96 (18)
C2'—C1'—H1'127.0C10—C9—H9121.0
S1'—C1'—H1'127.0C8—C9—H9121.0
C1'—C2'—C3'120 (4)F1—C10—C9118.83 (17)
C1'—C2'—H2'120.0F1—C10—C11118.46 (17)
C3'—C2'—H2'120.0C9—C10—C11122.72 (18)
C4—C3'—C2'108 (2)C10—C11—C12118.51 (18)
C4—C3'—H3'125.9C10—C11—H11120.7
C2'—C3'—H3'125.9C12—C11—H11120.7
C3'—C4—C5135.8 (9)C11—C12—C7120.73 (17)
C3—C4—C5122.9 (2)C11—C12—H12119.6
C3'—C4—S1'112.3 (9)C7—C12—H12119.6
C5—N1—N2—C6−174.53 (16)N2—N1—C5—O1178.84 (15)
C4—S1—C1—C2−0.7 (8)N2—N1—C5—C4−1.2 (3)
S1—C1—C2—C30.2 (13)C3'—C4—C5—O1168.9 (14)
C1—C2—C3—C40.5 (13)C3—C4—C5—O1−2.7 (4)
C4—S1'—C1'—C2'−3(7)S1'—C4—C5—O1−2.1 (4)
S1'—C1'—C2'—C3'2(9)S1—C4—C5—O1176.76 (14)
C1'—C2'—C3'—C40(7)C3'—C4—C5—N1−11.1 (14)
C2'—C3'—C4—C3−1(3)C3—C4—C5—N1177.3 (3)
C2'—C3'—C4—C5−174 (2)S1'—C4—C5—N1177.9 (4)
C2'—C3'—C4—S1'−3(3)S1—C4—C5—N1−3.2 (3)
C2'—C3'—C4—S1149 (7)N1—N2—C6—C7−179.76 (15)
C2—C3—C4—C3'4.5 (13)N2—C6—C7—C126.3 (3)
C2—C3—C4—C5178.5 (7)N2—C6—C7—C8−173.20 (17)
C2—C3—C4—S1'176 (3)C12—C7—C8—C9−1.6 (3)
C2—C3—C4—S1−1.0 (8)C6—C7—C8—C9177.91 (17)
C1'—S1'—C4—C3'4(4)C7—C8—C9—C100.5 (3)
C1'—S1'—C4—C3−5(5)C8—C9—C10—F1−179.27 (16)
C1'—S1'—C4—C5177 (4)C8—C9—C10—C110.9 (3)
C1'—S1'—C4—S1−2(4)F1—C10—C11—C12179.03 (15)
C1—S1—C4—C3'−30 (5)C9—C10—C11—C12−1.1 (3)
C1—S1—C4—C31.0 (3)C10—C11—C12—C70.0 (3)
C1—S1—C4—C5−178.5 (3)C8—C7—C12—C111.3 (3)
C1—S1—C4—S1'0.3 (5)C6—C7—C12—C11−178.15 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.90 (2)1.99 (3)2.893 (2)176 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.90 (2)1.99 (3)2.893 (2)176 (2)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N'-(4-Chloro-benzyl-idene)thio-phene-2-carbohydrazide.

Authors:  Jin-He Jiang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-27

3.  N'-(4-Bromo-benzyl-idene)thio-phene-2-carbohydrazide.

Authors:  Jin-He Jiang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-27
  3 in total
  2 in total

1.  N'-[(1E)-(2,6-Difluoro-phen-yl)methyl-idene]thio-phene-2-carbohydrazide.

Authors:  Amer M Alanazi; Adnan A Kadi; Ali A El-Emam; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11

2.  (E)-3-Chloro-N'-(2-fluoro-benzyl-idene)thio-phene-2-carbohydrazide.

Authors:  Sadia Sultan; Muhammad Taha; Syed Adnan Ali Shah; Bohari M Yamin; Hamizah Mohd Zaki
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-06-04
  2 in total

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