| Literature DB >> 22346949 |
Amer M Alanazi, Siham Lahsasni, Ali A El-Emam, Seik Weng Ng.
Abstract
In the title compound, C(12)H(9)FN(2)OS, the thienyl ring is disordered over two positions, with the S atom of the major component [occupancy = 87.08 (16)°] oriented towards the ortho-H atom of the benzene ring. The mol-ecule is nearly planar, the dihedral angle between the thio-phene and benzene rings being 13.0 (2)° in the major component. The azomethine C=N double bond in the mol-ecule is of an E configuration. In the crystal, mol-ecules are linked by pairs of N-H⋯O hydrogen bonds, forming inversion dimers.Entities:
Year: 2012 PMID: 22346949 PMCID: PMC3275004 DOI: 10.1107/S1600536811056121
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H9FN2OS | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1715 reflections |
| θ = 2.7–27.5° | |
| µ = 0.29 mm−1 | |
| β = 104.166 (9)° | Prism, colorless |
| 0.35 × 0.15 × 0.05 mm | |
| Agilent SuperNova Dual diffractometer with an Atlas detector | 2532 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 1917 reflections with |
| Mirror | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 27.6°, θmin = 2.7° |
| ω scan | |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) | |
| 4609 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2532 reflections | (Δ/σ)max = 0.001 |
| 171 parameters | Δρmax = 0.30 e Å−3 |
| 5 restraints | Δρmin = −0.28 e Å−3 |
| Occ. (<1) | |||||
| S1 | 0.72252 (5) | 0.67192 (12) | 0.49050 (4) | 0.01785 (19) | 0.8708 (16) |
| S1' | 0.5631 (6) | 0.5848 (19) | 0.3160 (5) | 0.0218 (7) | 0.1292 (16) |
| F1 | 1.06801 (9) | 0.4889 (2) | 0.93514 (8) | 0.0291 (3) | |
| O1 | 0.49118 (10) | 0.2092 (2) | 0.40405 (9) | 0.0203 (3) | |
| N1 | 0.60280 (12) | 0.2114 (3) | 0.54014 (11) | 0.0181 (4) | |
| N2 | 0.68783 (12) | 0.3050 (3) | 0.59944 (11) | 0.0164 (4) | |
| C1 | 0.7215 (3) | 0.8617 (10) | 0.4025 (4) | 0.0181 (7) | 0.8708 (16) |
| H1A | 0.7675 | 0.9928 | 0.4055 | 0.022* | 0.8708 (16) |
| C2 | 0.6467 (8) | 0.8018 (16) | 0.3276 (5) | 0.0203 (9) | 0.8708 (16) |
| H2 | 0.6347 | 0.8863 | 0.2722 | 0.024* | 0.8708 (16) |
| C3 | 0.5900 (3) | 0.6034 (9) | 0.3415 (3) | 0.0218 (7) | 0.8708 (16) |
| H3 | 0.5354 | 0.5381 | 0.2958 | 0.026* | 0.8708 (16) |
| C1' | 0.642 (6) | 0.827 (12) | 0.318 (4) | 0.0203 (9) | 0.13 |
| H1' | 0.6442 | 0.9298 | 0.2691 | 0.024* | 0.1292 (16) |
| C2' | 0.702 (3) | 0.842 (8) | 0.404 (3) | 0.0181 (7) | 0.13 |
| H2' | 0.7500 | 0.9690 | 0.4205 | 0.022* | 0.1292 (16) |
| C3' | 0.6923 (14) | 0.671 (3) | 0.4673 (13) | 0.01785 (19) | 0.13 |
| H3' | 0.7302 | 0.6679 | 0.5286 | 0.021* | 0.1292 (16) |
| C4 | 0.61940 (14) | 0.5099 (3) | 0.42645 (12) | 0.0166 (4) | |
| C5 | 0.56736 (14) | 0.3024 (3) | 0.45575 (13) | 0.0165 (4) | |
| C6 | 0.71912 (15) | 0.1929 (3) | 0.67428 (13) | 0.0169 (4) | |
| H6 | 0.6836 | 0.0534 | 0.6854 | 0.020* | |
| C7 | 0.80912 (14) | 0.2777 (3) | 0.74281 (12) | 0.0162 (4) | |
| C8 | 0.84780 (15) | 0.1384 (3) | 0.81905 (13) | 0.0188 (4) | |
| H8 | 0.8139 | −0.0068 | 0.8264 | 0.023* | |
| C9 | 0.93487 (16) | 0.2074 (3) | 0.88442 (13) | 0.0227 (5) | |
| H9 | 0.9613 | 0.1112 | 0.9360 | 0.027* | |
| C10 | 0.98170 (15) | 0.4193 (4) | 0.87216 (13) | 0.0199 (4) | |
| C11 | 0.94486 (15) | 0.5653 (3) | 0.79870 (13) | 0.0181 (4) | |
| H11 | 0.9783 | 0.7121 | 0.7926 | 0.022* | |
| C12 | 0.85802 (14) | 0.4930 (3) | 0.73393 (12) | 0.0166 (4) | |
| H12 | 0.8316 | 0.5913 | 0.6829 | 0.020* | |
| H1 | 0.5728 (17) | 0.078 (4) | 0.5544 (15) | 0.035 (7)* |
| S1 | 0.0196 (4) | 0.0175 (3) | 0.0169 (4) | −0.0051 (3) | 0.0053 (2) | −0.0012 (2) |
| S1' | 0.010 (2) | 0.0290 (13) | 0.025 (2) | −0.0022 (16) | 0.0011 (14) | 0.0011 (18) |
| F1 | 0.0230 (6) | 0.0378 (7) | 0.0222 (7) | −0.0021 (6) | −0.0027 (5) | −0.0023 (6) |
| O1 | 0.0173 (7) | 0.0236 (7) | 0.0197 (7) | −0.0040 (6) | 0.0037 (6) | −0.0009 (6) |
| N1 | 0.0172 (8) | 0.0194 (9) | 0.0174 (9) | −0.0056 (7) | 0.0035 (7) | −0.0015 (7) |
| N2 | 0.0146 (8) | 0.0165 (8) | 0.0185 (9) | −0.0005 (7) | 0.0048 (7) | −0.0025 (6) |
| C1 | 0.015 (2) | 0.0156 (15) | 0.0255 (11) | −0.0038 (15) | 0.0096 (15) | 0.0012 (9) |
| C2 | 0.0175 (15) | 0.022 (3) | 0.023 (2) | 0.004 (2) | 0.0069 (15) | 0.0076 (13) |
| C3 | 0.010 (2) | 0.0290 (13) | 0.025 (2) | −0.0022 (16) | 0.0011 (14) | 0.0011 (18) |
| C1' | 0.0175 (15) | 0.022 (3) | 0.023 (2) | 0.004 (2) | 0.0069 (15) | 0.0076 (13) |
| C2' | 0.015 (2) | 0.0156 (15) | 0.0255 (11) | −0.0038 (15) | 0.0096 (15) | 0.0012 (9) |
| C3' | 0.0196 (4) | 0.0175 (3) | 0.0169 (4) | −0.0051 (3) | 0.0053 (2) | −0.0012 (2) |
| C4 | 0.0148 (9) | 0.0168 (9) | 0.0192 (10) | 0.0011 (8) | 0.0058 (8) | −0.0020 (8) |
| C5 | 0.0151 (9) | 0.0186 (10) | 0.0169 (10) | 0.0012 (8) | 0.0062 (8) | −0.0030 (8) |
| C6 | 0.0176 (10) | 0.0153 (9) | 0.0195 (10) | −0.0010 (8) | 0.0077 (8) | 0.0006 (8) |
| C7 | 0.0181 (10) | 0.0168 (9) | 0.0159 (9) | 0.0017 (8) | 0.0084 (8) | −0.0005 (7) |
| C8 | 0.0225 (10) | 0.0151 (9) | 0.0204 (10) | −0.0016 (8) | 0.0082 (9) | 0.0013 (8) |
| C9 | 0.0280 (11) | 0.0218 (10) | 0.0174 (10) | 0.0058 (9) | 0.0036 (9) | 0.0040 (8) |
| C10 | 0.0161 (9) | 0.0268 (11) | 0.0162 (10) | 0.0004 (9) | 0.0030 (8) | −0.0043 (8) |
| C11 | 0.0200 (10) | 0.0166 (10) | 0.0195 (10) | −0.0013 (8) | 0.0083 (9) | −0.0014 (8) |
| C12 | 0.0177 (10) | 0.0177 (9) | 0.0151 (9) | 0.0034 (8) | 0.0055 (8) | 0.0013 (8) |
| S1—C1 | 1.714 (4) | C2'—C3' | 1.389 (11) |
| S1—C4 | 1.7346 (19) | C2'—H2' | 0.9500 |
| S1'—C1' | 1.713 (11) | C3'—C4 | 1.361 (10) |
| S1'—C4 | 1.725 (6) | C3'—H3' | 0.9500 |
| F1—C10 | 1.363 (2) | C4—C5 | 1.478 (3) |
| O1—C5 | 1.238 (2) | C6—C7 | 1.465 (3) |
| N1—C5 | 1.361 (2) | C6—H6 | 0.9500 |
| N1—N2 | 1.370 (2) | C7—C12 | 1.392 (3) |
| N1—H1 | 0.90 (2) | C7—C8 | 1.394 (3) |
| N2—C6 | 1.283 (2) | C8—C9 | 1.388 (3) |
| C1—C2 | 1.363 (3) | C8—H8 | 0.9500 |
| C1—H1A | 0.9500 | C9—C10 | 1.374 (3) |
| C2—C3 | 1.388 (5) | C9—H9 | 0.9500 |
| C2—H2 | 0.9500 | C10—C11 | 1.380 (3) |
| C3—C4 | 1.367 (4) | C11—C12 | 1.386 (3) |
| C3—H3 | 0.9500 | C11—H11 | 0.9500 |
| C1'—C2' | 1.362 (10) | C12—H12 | 0.9500 |
| C1'—H1' | 0.9500 | ||
| C1—S1—C4 | 91.55 (18) | C5—C4—S1' | 111.4 (3) |
| C1'—S1'—C4 | 93.3 (15) | C3—C4—S1 | 109.9 (2) |
| C5—N1—N2 | 121.58 (17) | C5—C4—S1 | 127.20 (14) |
| C5—N1—H1 | 118.1 (14) | O1—C5—N1 | 119.21 (18) |
| N2—N1—H1 | 120.0 (14) | O1—C5—C4 | 120.57 (17) |
| C6—N2—N1 | 116.04 (16) | N1—C5—C4 | 120.22 (17) |
| C2—C1—S1 | 111.8 (3) | N2—C6—C7 | 120.68 (17) |
| C2—C1—H1A | 124.1 | N2—C6—H6 | 119.7 |
| S1—C1—H1A | 124.1 | C7—C6—H6 | 119.7 |
| C1—C2—C3 | 112.4 (4) | C12—C7—C8 | 118.76 (18) |
| C1—C2—H2 | 123.8 | C12—C7—C6 | 122.06 (17) |
| C3—C2—H2 | 123.8 | C8—C7—C6 | 119.18 (17) |
| C4—C3—C2 | 114.3 (3) | C9—C8—C7 | 121.31 (18) |
| C4—C3—H3 | 122.8 | C9—C8—H8 | 119.3 |
| C2—C3—H3 | 122.8 | C7—C8—H8 | 119.3 |
| C2'—C1'—S1' | 106 (3) | C10—C9—C8 | 117.96 (18) |
| C2'—C1'—H1' | 127.0 | C10—C9—H9 | 121.0 |
| S1'—C1'—H1' | 127.0 | C8—C9—H9 | 121.0 |
| C1'—C2'—C3' | 120 (4) | F1—C10—C9 | 118.83 (17) |
| C1'—C2'—H2' | 120.0 | F1—C10—C11 | 118.46 (17) |
| C3'—C2'—H2' | 120.0 | C9—C10—C11 | 122.72 (18) |
| C4—C3'—C2' | 108 (2) | C10—C11—C12 | 118.51 (18) |
| C4—C3'—H3' | 125.9 | C10—C11—H11 | 120.7 |
| C2'—C3'—H3' | 125.9 | C12—C11—H11 | 120.7 |
| C3'—C4—C5 | 135.8 (9) | C11—C12—C7 | 120.73 (17) |
| C3—C4—C5 | 122.9 (2) | C11—C12—H12 | 119.6 |
| C3'—C4—S1' | 112.3 (9) | C7—C12—H12 | 119.6 |
| C5—N1—N2—C6 | −174.53 (16) | N2—N1—C5—O1 | 178.84 (15) |
| C4—S1—C1—C2 | −0.7 (8) | N2—N1—C5—C4 | −1.2 (3) |
| S1—C1—C2—C3 | 0.2 (13) | C3'—C4—C5—O1 | 168.9 (14) |
| C1—C2—C3—C4 | 0.5 (13) | C3—C4—C5—O1 | −2.7 (4) |
| C4—S1'—C1'—C2' | −3(7) | S1'—C4—C5—O1 | −2.1 (4) |
| S1'—C1'—C2'—C3' | 2(9) | S1—C4—C5—O1 | 176.76 (14) |
| C1'—C2'—C3'—C4 | 0(7) | C3'—C4—C5—N1 | −11.1 (14) |
| C2'—C3'—C4—C3 | −1(3) | C3—C4—C5—N1 | 177.3 (3) |
| C2'—C3'—C4—C5 | −174 (2) | S1'—C4—C5—N1 | 177.9 (4) |
| C2'—C3'—C4—S1' | −3(3) | S1—C4—C5—N1 | −3.2 (3) |
| C2'—C3'—C4—S1 | 149 (7) | N1—N2—C6—C7 | −179.76 (15) |
| C2—C3—C4—C3' | 4.5 (13) | N2—C6—C7—C12 | 6.3 (3) |
| C2—C3—C4—C5 | 178.5 (7) | N2—C6—C7—C8 | −173.20 (17) |
| C2—C3—C4—S1' | 176 (3) | C12—C7—C8—C9 | −1.6 (3) |
| C2—C3—C4—S1 | −1.0 (8) | C6—C7—C8—C9 | 177.91 (17) |
| C1'—S1'—C4—C3' | 4(4) | C7—C8—C9—C10 | 0.5 (3) |
| C1'—S1'—C4—C3 | −5(5) | C8—C9—C10—F1 | −179.27 (16) |
| C1'—S1'—C4—C5 | 177 (4) | C8—C9—C10—C11 | 0.9 (3) |
| C1'—S1'—C4—S1 | −2(4) | F1—C10—C11—C12 | 179.03 (15) |
| C1—S1—C4—C3' | −30 (5) | C9—C10—C11—C12 | −1.1 (3) |
| C1—S1—C4—C3 | 1.0 (3) | C10—C11—C12—C7 | 0.0 (3) |
| C1—S1—C4—C5 | −178.5 (3) | C8—C7—C12—C11 | 1.3 (3) |
| C1—S1—C4—S1' | 0.3 (5) | C6—C7—C12—C11 | −178.15 (17) |
| H··· | ||||
| N1—H1···O1i | 0.90 (2) | 1.99 (3) | 2.893 (2) | 176 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1i | 0.90 (2) | 1.99 (3) | 2.893 (2) | 176 (2) |
Symmetry code: (i) .