Literature DB >> 22346950

N'-[(1E)-(2,6-Difluoro-phen-yl)methyl-idene]thio-phene-2-carbohydrazide.

Amer M Alanazi, Adnan A Kadi, Ali A El-Emam, Seik Weng Ng.   

Abstract

In the title compound, C(12)H(8)F(2)N(2)OS, the thienyl ring is disordered over two positions, with the S atom of the major component [occupancy = 75.03 (18)%] oriented away from an ortho-F atom of the benzene ring. The mol-ecule is nearly planar, the dihedral angle between the thio-phene and benzene rings being 6.19 (18) (in the major component) or 3.5 (6)° (in the minor component). The azomethine C=N double-bond in the mol-ecule is of an E configuration. In the crystal, mol-ecules are linked by pairs of N-H⋯O hydrogen bonds, generating inversion dimers.

Entities:  

Year:  2012        PMID: 22346950      PMCID: PMC3275005          DOI: 10.1107/S160053681105611X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Alanazi et al. (2012 ▶).

Experimental

Crystal data

C12H8F2N2OS M = 266.26 Triclinic, a = 6.5032 (3) Å b = 7.7516 (4) Å c = 11.5224 (5) Å α = 95.184 (4)° β = 103.344 (4)° γ = 94.285 (4)° V = 560.11 (5) Å3 Z = 2 Mo Kα radiation μ = 0.30 mm−1 T = 100 K 0.40 × 0.30 × 0.20 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.888, T max = 0.942 8250 measured reflections 2594 independent reflections 2174 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.108 S = 1.07 2594 reflections 180 parameters 24 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681105611X/xu5416sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681105611X/xu5416Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681105611X/xu5416Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H8F2N2OSZ = 2
Mr = 266.26F(000) = 272
Triclinic, P1Dx = 1.579 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.5032 (3) ÅCell parameters from 3787 reflections
b = 7.7516 (4) Åθ = 2.7–27.5°
c = 11.5224 (5) ŵ = 0.30 mm1
α = 95.184 (4)°T = 100 K
β = 103.344 (4)°Wedge, colorless
γ = 94.285 (4)°0.40 × 0.30 × 0.20 mm
V = 560.11 (5) Å3
Agilent SuperNova Dual diffractometer with an Atlas detector2594 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2174 reflections with I > 2σ(I)
MirrorRint = 0.035
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.7°
ω scanh = −8→8
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −10→10
Tmin = 0.888, Tmax = 0.942l = −15→14
8250 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0585P)2 + 0.1004P] where P = (Fo2 + 2Fc2)/3
2594 reflections(Δ/σ)max = 0.001
180 parametersΔρmax = 0.33 e Å3
24 restraintsΔρmin = −0.28 e Å3
xyzUiso*/UeqOcc. (<1)
S10.61235 (9)0.40630 (10)0.12814 (6)0.01924 (19)0.7503 (18)
S1'0.9967 (5)0.2911 (5)0.2831 (4)0.0226 (7)0.2497 (18)
F11.02233 (15)0.19692 (13)0.85830 (8)0.0285 (3)
F21.26733 (15)0.14995 (13)0.50356 (8)0.0270 (3)
O10.47384 (17)0.48037 (15)0.34181 (10)0.0228 (3)
N10.7178 (2)0.37086 (17)0.47830 (12)0.0188 (3)
N20.8961 (2)0.28597 (16)0.51113 (11)0.0178 (3)
C10.8196 (10)0.3496 (7)0.0668 (6)0.0214 (8)0.7503 (18)
H1A0.81260.3501−0.01650.026*0.7503 (18)
C20.9871 (9)0.3058 (8)0.1414 (3)0.0199 (7)0.7503 (18)
H21.11270.27250.12050.024*0.7503 (18)
C30.9481 (7)0.3168 (7)0.2667 (5)0.0226 (7)0.7503 (18)
H31.04830.29150.33570.027*0.7503 (18)
C1'0.6702 (15)0.4020 (15)0.1526 (9)0.01924 (19)0.25
H1'0.53500.44360.12770.023*0.2497 (18)
C2'0.801 (3)0.371 (2)0.074 (2)0.0214 (8)0.25
H2'0.78270.3824−0.00920.026*0.2497 (18)
C3'0.983 (3)0.314 (3)0.1659 (13)0.0199 (7)0.25
H3'1.10480.28980.13750.024*0.2497 (18)
C40.7509 (2)0.36777 (19)0.26883 (13)0.0172 (3)
C50.6407 (2)0.40831 (19)0.36486 (13)0.0176 (3)
C70.9443 (2)0.26314 (19)0.62276 (14)0.0176 (3)
H70.85470.30200.67210.021*
C81.1326 (2)0.17935 (19)0.67688 (13)0.0167 (3)
C91.1710 (2)0.1525 (2)0.79783 (13)0.0190 (3)
C101.3490 (3)0.0862 (2)0.86064 (14)0.0225 (4)
H101.36800.07330.94350.027*
C111.4994 (3)0.0391 (2)0.79913 (15)0.0229 (4)
H111.6238−0.00690.84010.027*
C121.4694 (2)0.0587 (2)0.67816 (15)0.0217 (3)
H121.57140.02460.63560.026*
C131.2902 (2)0.1279 (2)0.62060 (14)0.0192 (3)
H10.656 (3)0.409 (3)0.535 (2)0.040 (6)*
U11U22U33U12U13U23
S10.0198 (4)0.0239 (3)0.0153 (3)0.0069 (3)0.0043 (2)0.0045 (2)
S1'0.0216 (14)0.0257 (11)0.0218 (11)0.0042 (9)0.0074 (10)0.0018 (8)
F10.0271 (5)0.0443 (6)0.0201 (5)0.0167 (5)0.0120 (4)0.0075 (4)
F20.0266 (5)0.0396 (6)0.0208 (5)0.0157 (4)0.0119 (4)0.0080 (4)
O10.0185 (6)0.0310 (6)0.0209 (6)0.0117 (5)0.0054 (5)0.0045 (5)
N10.0168 (6)0.0247 (7)0.0175 (6)0.0095 (5)0.0071 (5)0.0026 (5)
N20.0135 (6)0.0196 (7)0.0208 (7)0.0053 (5)0.0043 (5)0.0026 (5)
C10.0245 (12)0.0234 (14)0.0196 (10)0.0062 (10)0.0103 (8)0.0032 (10)
C20.0207 (8)0.0267 (10)0.0157 (18)0.0046 (7)0.0111 (13)0.0002 (14)
C30.0216 (14)0.0257 (11)0.0218 (11)0.0042 (9)0.0074 (10)0.0018 (8)
C1'0.0198 (4)0.0239 (3)0.0153 (3)0.0069 (3)0.0043 (2)0.0045 (2)
C2'0.0245 (12)0.0234 (14)0.0196 (10)0.0062 (10)0.0103 (8)0.0032 (10)
C3'0.0207 (8)0.0267 (10)0.0157 (18)0.0046 (7)0.0111 (13)0.0002 (14)
C40.0167 (7)0.0182 (7)0.0172 (7)0.0026 (6)0.0050 (6)0.0018 (6)
C50.0168 (7)0.0174 (7)0.0192 (7)0.0029 (6)0.0055 (6)0.0009 (6)
C70.0157 (7)0.0175 (7)0.0210 (7)0.0035 (6)0.0071 (6)0.0014 (6)
C80.0148 (7)0.0153 (7)0.0202 (8)0.0031 (6)0.0041 (6)0.0016 (6)
C90.0187 (7)0.0210 (8)0.0194 (8)0.0056 (6)0.0076 (6)0.0015 (6)
C100.0239 (8)0.0248 (8)0.0184 (8)0.0057 (7)0.0024 (6)0.0047 (6)
C110.0165 (7)0.0216 (8)0.0298 (9)0.0063 (6)0.0018 (7)0.0053 (7)
C120.0172 (7)0.0217 (8)0.0286 (8)0.0060 (6)0.0089 (6)0.0033 (6)
C130.0197 (8)0.0186 (7)0.0205 (8)0.0027 (6)0.0069 (6)0.0032 (6)
S1—C41.7269 (16)C1'—C2'1.40 (2)
S1—C11.727 (6)C1'—H1'0.9500
S1'—C3'1.360 (16)C2'—C3'1.52 (3)
S1'—C41.725 (3)C2'—H2'0.9500
F1—C91.3624 (17)C3'—H3'0.9500
F2—C131.3500 (18)C4—C51.474 (2)
O1—C51.2425 (18)C7—C81.466 (2)
N1—C51.354 (2)C7—H70.9500
N1—N21.3702 (18)C8—C91.395 (2)
N1—H10.88 (2)C8—C131.397 (2)
N2—C71.284 (2)C9—C101.377 (2)
C1—C21.311 (8)C10—C111.385 (2)
C1—H1A0.9500C10—H100.9500
C2—C31.519 (7)C11—C121.386 (2)
C2—H20.9500C11—H110.9500
C3—C41.374 (5)C12—C131.374 (2)
C3—H30.9500C12—H120.9500
C1'—C41.378 (10)
C4—S1—C191.0 (2)C5—C4—S1'127.47 (18)
C3'—S1'—C488.3 (9)C3—C4—S1111.5 (3)
C5—N1—N2123.04 (13)C5—C4—S1114.07 (11)
C5—N1—H1118.9 (14)O1—C5—N1118.90 (13)
N2—N1—H1117.9 (14)O1—C5—C4119.41 (14)
C7—N2—N1113.74 (13)N1—C5—C4121.68 (14)
C2—C1—S1116.3 (5)N2—C7—C8122.42 (14)
C2—C1—H1A121.9N2—C7—H7118.8
S1—C1—H1A121.9C8—C7—H7118.8
C1—C2—C3109.0 (5)C9—C8—C13114.10 (14)
C1—C2—H2125.5C9—C8—C7119.41 (14)
C3—C2—H2125.5C13—C8—C7126.42 (14)
C4—C3—C2112.2 (4)F1—C9—C10117.74 (14)
C4—C3—H3123.9F1—C9—C8117.47 (14)
C2—C3—H3123.9C10—C9—C8124.78 (14)
C4—C1'—C2'115.3 (11)C9—C10—C11117.90 (15)
C4—C1'—H1'122.3C9—C10—H10121.0
C2'—C1'—H1'122.3C11—C10—H10121.0
C1'—C2'—C3'96.1 (16)C10—C11—C12120.42 (15)
C1'—C2'—H2'131.9C10—C11—H11119.8
C3'—C2'—H2'131.9C12—C11—H11119.8
S1'—C3'—C2'129.6 (16)C13—C12—C11119.10 (15)
S1'—C3'—H3'115.2C13—C12—H12120.5
C2'—C3'—H3'115.2C11—C12—H12120.5
C3—C4—C1'103.4 (5)F2—C13—C12117.98 (14)
C3—C4—C5134.2 (3)F2—C13—C8118.33 (14)
C1'—C4—C5121.8 (4)C12—C13—C8123.67 (15)
C1'—C4—S1'110.5 (5)
C5—N1—N2—C7179.73 (14)C3—C4—C5—O1167.6 (3)
C4—S1—C1—C2−0.8 (5)C1'—C4—C5—O1−2.3 (6)
S1—C1—C2—C30.4 (7)S1'—C4—C5—O1172.3 (2)
C1—C2—C3—C40.4 (7)S1—C4—C5—O1−6.89 (19)
C4—C1'—C2'—C3'−1.0 (16)C3—C4—C5—N1−11.6 (4)
C4—S1'—C3'—C2'−4.0 (19)C1'—C4—C5—N1178.5 (5)
C1'—C2'—C3'—S1'4(2)S1'—C4—C5—N1−6.9 (3)
C2—C3—C4—C1'−4.4 (7)S1—C4—C5—N1173.89 (12)
C2—C3—C4—C5−175.6 (3)N1—N2—C7—C8−178.28 (13)
C2—C3—C4—S1'155 (3)N2—C7—C8—C9−177.48 (14)
C2—C3—C4—S1−1.0 (5)N2—C7—C8—C135.7 (3)
C2'—C1'—C4—C31.9 (12)C13—C8—C9—F1−178.95 (13)
C2'—C1'—C4—C5174.5 (10)C7—C8—C9—F13.9 (2)
C2'—C1'—C4—S1'−0.9 (13)C13—C8—C9—C101.8 (2)
C2'—C1'—C4—S1−157 (4)C7—C8—C9—C10−175.39 (14)
C3'—S1'—C4—C3−19 (3)F1—C9—C10—C11179.29 (14)
C3'—S1'—C4—C1'2.6 (10)C8—C9—C10—C11−1.4 (2)
C3'—S1'—C4—C5−172.6 (9)C9—C10—C11—C120.0 (2)
C3'—S1'—C4—S16.6 (9)C10—C11—C12—C131.0 (2)
C1—S1—C4—C31.0 (3)C11—C12—C13—F2178.28 (14)
C1—S1—C4—C1'23 (3)C11—C12—C13—C8−0.6 (2)
C1—S1—C4—C5176.8 (2)C9—C8—C13—F2−179.60 (13)
C1—S1—C4—S1'−2.4 (3)C7—C8—C13—F2−2.7 (2)
N2—N1—C5—O1177.55 (13)C9—C8—C13—C12−0.7 (2)
N2—N1—C5—C4−3.2 (2)C7—C8—C13—C12176.23 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.88 (2)1.97 (2)2.856 (2)174 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.88 (2)1.97 (2)2.856 (2)174 (2)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N'-[(1E)-(4-Fluoro-phen-yl)methyl-idene]thio-phene-2-carbohydrazide.

Authors:  Amer M Alanazi; Siham Lahsasni; Ali A El-Emam; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11
  2 in total
  1 in total

1.  (E)-3-Chloro-N'-(2-fluoro-benzyl-idene)thio-phene-2-carbohydrazide.

Authors:  Sadia Sultan; Muhammad Taha; Syed Adnan Ali Shah; Bohari M Yamin; Hamizah Mohd Zaki
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-06-04
  1 in total

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