| Literature DB >> 22346950 |
Amer M Alanazi, Adnan A Kadi, Ali A El-Emam, Seik Weng Ng.
Abstract
In the title compound, C(12)H(8)F(2)N(2)OS, the thienyl ring is disordered over two positions, with the S atom of the major component [occupancy = 75.03 (18)%] oriented away from an ortho-F atom of the benzene ring. The mol-ecule is nearly planar, the dihedral angle between the thio-phene and benzene rings being 6.19 (18) (in the major component) or 3.5 (6)° (in the minor component). The azomethine C=N double-bond in the mol-ecule is of an E configuration. In the crystal, mol-ecules are linked by pairs of N-H⋯O hydrogen bonds, generating inversion dimers.Entities:
Year: 2012 PMID: 22346950 PMCID: PMC3275005 DOI: 10.1107/S160053681105611X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H8F2N2OS | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3787 reflections | |
| θ = 2.7–27.5° | |
| µ = 0.30 mm−1 | |
| α = 95.184 (4)° | |
| β = 103.344 (4)° | Wedge, colorless |
| γ = 94.285 (4)° | 0.40 × 0.30 × 0.20 mm |
| Agilent SuperNova Dual diffractometer with an Atlas detector | 2594 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 2174 reflections with |
| Mirror | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 27.6°, θmin = 2.7° |
| ω scan | |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) | |
| 8250 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2594 reflections | (Δ/σ)max = 0.001 |
| 180 parameters | Δρmax = 0.33 e Å−3 |
| 24 restraints | Δρmin = −0.28 e Å−3 |
| Occ. (<1) | |||||
| S1 | 0.61235 (9) | 0.40630 (10) | 0.12814 (6) | 0.01924 (19) | 0.7503 (18) |
| S1' | 0.9967 (5) | 0.2911 (5) | 0.2831 (4) | 0.0226 (7) | 0.2497 (18) |
| F1 | 1.02233 (15) | 0.19692 (13) | 0.85830 (8) | 0.0285 (3) | |
| F2 | 1.26733 (15) | 0.14995 (13) | 0.50356 (8) | 0.0270 (3) | |
| O1 | 0.47384 (17) | 0.48037 (15) | 0.34181 (10) | 0.0228 (3) | |
| N1 | 0.7178 (2) | 0.37086 (17) | 0.47830 (12) | 0.0188 (3) | |
| N2 | 0.8961 (2) | 0.28597 (16) | 0.51113 (11) | 0.0178 (3) | |
| C1 | 0.8196 (10) | 0.3496 (7) | 0.0668 (6) | 0.0214 (8) | 0.7503 (18) |
| H1A | 0.8126 | 0.3501 | −0.0165 | 0.026* | 0.7503 (18) |
| C2 | 0.9871 (9) | 0.3058 (8) | 0.1414 (3) | 0.0199 (7) | 0.7503 (18) |
| H2 | 1.1127 | 0.2725 | 0.1205 | 0.024* | 0.7503 (18) |
| C3 | 0.9481 (7) | 0.3168 (7) | 0.2667 (5) | 0.0226 (7) | 0.7503 (18) |
| H3 | 1.0483 | 0.2915 | 0.3357 | 0.027* | 0.7503 (18) |
| C1' | 0.6702 (15) | 0.4020 (15) | 0.1526 (9) | 0.01924 (19) | 0.25 |
| H1' | 0.5350 | 0.4436 | 0.1277 | 0.023* | 0.2497 (18) |
| C2' | 0.801 (3) | 0.371 (2) | 0.074 (2) | 0.0214 (8) | 0.25 |
| H2' | 0.7827 | 0.3824 | −0.0092 | 0.026* | 0.2497 (18) |
| C3' | 0.983 (3) | 0.314 (3) | 0.1659 (13) | 0.0199 (7) | 0.25 |
| H3' | 1.1048 | 0.2898 | 0.1375 | 0.024* | 0.2497 (18) |
| C4 | 0.7509 (2) | 0.36777 (19) | 0.26883 (13) | 0.0172 (3) | |
| C5 | 0.6407 (2) | 0.40831 (19) | 0.36486 (13) | 0.0176 (3) | |
| C7 | 0.9443 (2) | 0.26314 (19) | 0.62276 (14) | 0.0176 (3) | |
| H7 | 0.8547 | 0.3020 | 0.6721 | 0.021* | |
| C8 | 1.1326 (2) | 0.17935 (19) | 0.67688 (13) | 0.0167 (3) | |
| C9 | 1.1710 (2) | 0.1525 (2) | 0.79783 (13) | 0.0190 (3) | |
| C10 | 1.3490 (3) | 0.0862 (2) | 0.86064 (14) | 0.0225 (4) | |
| H10 | 1.3680 | 0.0733 | 0.9435 | 0.027* | |
| C11 | 1.4994 (3) | 0.0391 (2) | 0.79913 (15) | 0.0229 (4) | |
| H11 | 1.6238 | −0.0069 | 0.8401 | 0.027* | |
| C12 | 1.4694 (2) | 0.0587 (2) | 0.67816 (15) | 0.0217 (3) | |
| H12 | 1.5714 | 0.0246 | 0.6356 | 0.026* | |
| C13 | 1.2902 (2) | 0.1279 (2) | 0.62060 (14) | 0.0192 (3) | |
| H1 | 0.656 (3) | 0.409 (3) | 0.535 (2) | 0.040 (6)* |
| S1 | 0.0198 (4) | 0.0239 (3) | 0.0153 (3) | 0.0069 (3) | 0.0043 (2) | 0.0045 (2) |
| S1' | 0.0216 (14) | 0.0257 (11) | 0.0218 (11) | 0.0042 (9) | 0.0074 (10) | 0.0018 (8) |
| F1 | 0.0271 (5) | 0.0443 (6) | 0.0201 (5) | 0.0167 (5) | 0.0120 (4) | 0.0075 (4) |
| F2 | 0.0266 (5) | 0.0396 (6) | 0.0208 (5) | 0.0157 (4) | 0.0119 (4) | 0.0080 (4) |
| O1 | 0.0185 (6) | 0.0310 (6) | 0.0209 (6) | 0.0117 (5) | 0.0054 (5) | 0.0045 (5) |
| N1 | 0.0168 (6) | 0.0247 (7) | 0.0175 (6) | 0.0095 (5) | 0.0071 (5) | 0.0026 (5) |
| N2 | 0.0135 (6) | 0.0196 (7) | 0.0208 (7) | 0.0053 (5) | 0.0043 (5) | 0.0026 (5) |
| C1 | 0.0245 (12) | 0.0234 (14) | 0.0196 (10) | 0.0062 (10) | 0.0103 (8) | 0.0032 (10) |
| C2 | 0.0207 (8) | 0.0267 (10) | 0.0157 (18) | 0.0046 (7) | 0.0111 (13) | 0.0002 (14) |
| C3 | 0.0216 (14) | 0.0257 (11) | 0.0218 (11) | 0.0042 (9) | 0.0074 (10) | 0.0018 (8) |
| C1' | 0.0198 (4) | 0.0239 (3) | 0.0153 (3) | 0.0069 (3) | 0.0043 (2) | 0.0045 (2) |
| C2' | 0.0245 (12) | 0.0234 (14) | 0.0196 (10) | 0.0062 (10) | 0.0103 (8) | 0.0032 (10) |
| C3' | 0.0207 (8) | 0.0267 (10) | 0.0157 (18) | 0.0046 (7) | 0.0111 (13) | 0.0002 (14) |
| C4 | 0.0167 (7) | 0.0182 (7) | 0.0172 (7) | 0.0026 (6) | 0.0050 (6) | 0.0018 (6) |
| C5 | 0.0168 (7) | 0.0174 (7) | 0.0192 (7) | 0.0029 (6) | 0.0055 (6) | 0.0009 (6) |
| C7 | 0.0157 (7) | 0.0175 (7) | 0.0210 (7) | 0.0035 (6) | 0.0071 (6) | 0.0014 (6) |
| C8 | 0.0148 (7) | 0.0153 (7) | 0.0202 (8) | 0.0031 (6) | 0.0041 (6) | 0.0016 (6) |
| C9 | 0.0187 (7) | 0.0210 (8) | 0.0194 (8) | 0.0056 (6) | 0.0076 (6) | 0.0015 (6) |
| C10 | 0.0239 (8) | 0.0248 (8) | 0.0184 (8) | 0.0057 (7) | 0.0024 (6) | 0.0047 (6) |
| C11 | 0.0165 (7) | 0.0216 (8) | 0.0298 (9) | 0.0063 (6) | 0.0018 (7) | 0.0053 (7) |
| C12 | 0.0172 (7) | 0.0217 (8) | 0.0286 (8) | 0.0060 (6) | 0.0089 (6) | 0.0033 (6) |
| C13 | 0.0197 (8) | 0.0186 (7) | 0.0205 (8) | 0.0027 (6) | 0.0069 (6) | 0.0032 (6) |
| S1—C4 | 1.7269 (16) | C1'—C2' | 1.40 (2) |
| S1—C1 | 1.727 (6) | C1'—H1' | 0.9500 |
| S1'—C3' | 1.360 (16) | C2'—C3' | 1.52 (3) |
| S1'—C4 | 1.725 (3) | C2'—H2' | 0.9500 |
| F1—C9 | 1.3624 (17) | C3'—H3' | 0.9500 |
| F2—C13 | 1.3500 (18) | C4—C5 | 1.474 (2) |
| O1—C5 | 1.2425 (18) | C7—C8 | 1.466 (2) |
| N1—C5 | 1.354 (2) | C7—H7 | 0.9500 |
| N1—N2 | 1.3702 (18) | C8—C9 | 1.395 (2) |
| N1—H1 | 0.88 (2) | C8—C13 | 1.397 (2) |
| N2—C7 | 1.284 (2) | C9—C10 | 1.377 (2) |
| C1—C2 | 1.311 (8) | C10—C11 | 1.385 (2) |
| C1—H1A | 0.9500 | C10—H10 | 0.9500 |
| C2—C3 | 1.519 (7) | C11—C12 | 1.386 (2) |
| C2—H2 | 0.9500 | C11—H11 | 0.9500 |
| C3—C4 | 1.374 (5) | C12—C13 | 1.374 (2) |
| C3—H3 | 0.9500 | C12—H12 | 0.9500 |
| C1'—C4 | 1.378 (10) | ||
| C4—S1—C1 | 91.0 (2) | C5—C4—S1' | 127.47 (18) |
| C3'—S1'—C4 | 88.3 (9) | C3—C4—S1 | 111.5 (3) |
| C5—N1—N2 | 123.04 (13) | C5—C4—S1 | 114.07 (11) |
| C5—N1—H1 | 118.9 (14) | O1—C5—N1 | 118.90 (13) |
| N2—N1—H1 | 117.9 (14) | O1—C5—C4 | 119.41 (14) |
| C7—N2—N1 | 113.74 (13) | N1—C5—C4 | 121.68 (14) |
| C2—C1—S1 | 116.3 (5) | N2—C7—C8 | 122.42 (14) |
| C2—C1—H1A | 121.9 | N2—C7—H7 | 118.8 |
| S1—C1—H1A | 121.9 | C8—C7—H7 | 118.8 |
| C1—C2—C3 | 109.0 (5) | C9—C8—C13 | 114.10 (14) |
| C1—C2—H2 | 125.5 | C9—C8—C7 | 119.41 (14) |
| C3—C2—H2 | 125.5 | C13—C8—C7 | 126.42 (14) |
| C4—C3—C2 | 112.2 (4) | F1—C9—C10 | 117.74 (14) |
| C4—C3—H3 | 123.9 | F1—C9—C8 | 117.47 (14) |
| C2—C3—H3 | 123.9 | C10—C9—C8 | 124.78 (14) |
| C4—C1'—C2' | 115.3 (11) | C9—C10—C11 | 117.90 (15) |
| C4—C1'—H1' | 122.3 | C9—C10—H10 | 121.0 |
| C2'—C1'—H1' | 122.3 | C11—C10—H10 | 121.0 |
| C1'—C2'—C3' | 96.1 (16) | C10—C11—C12 | 120.42 (15) |
| C1'—C2'—H2' | 131.9 | C10—C11—H11 | 119.8 |
| C3'—C2'—H2' | 131.9 | C12—C11—H11 | 119.8 |
| S1'—C3'—C2' | 129.6 (16) | C13—C12—C11 | 119.10 (15) |
| S1'—C3'—H3' | 115.2 | C13—C12—H12 | 120.5 |
| C2'—C3'—H3' | 115.2 | C11—C12—H12 | 120.5 |
| C3—C4—C1' | 103.4 (5) | F2—C13—C12 | 117.98 (14) |
| C3—C4—C5 | 134.2 (3) | F2—C13—C8 | 118.33 (14) |
| C1'—C4—C5 | 121.8 (4) | C12—C13—C8 | 123.67 (15) |
| C1'—C4—S1' | 110.5 (5) | ||
| C5—N1—N2—C7 | 179.73 (14) | C3—C4—C5—O1 | 167.6 (3) |
| C4—S1—C1—C2 | −0.8 (5) | C1'—C4—C5—O1 | −2.3 (6) |
| S1—C1—C2—C3 | 0.4 (7) | S1'—C4—C5—O1 | 172.3 (2) |
| C1—C2—C3—C4 | 0.4 (7) | S1—C4—C5—O1 | −6.89 (19) |
| C4—C1'—C2'—C3' | −1.0 (16) | C3—C4—C5—N1 | −11.6 (4) |
| C4—S1'—C3'—C2' | −4.0 (19) | C1'—C4—C5—N1 | 178.5 (5) |
| C1'—C2'—C3'—S1' | 4(2) | S1'—C4—C5—N1 | −6.9 (3) |
| C2—C3—C4—C1' | −4.4 (7) | S1—C4—C5—N1 | 173.89 (12) |
| C2—C3—C4—C5 | −175.6 (3) | N1—N2—C7—C8 | −178.28 (13) |
| C2—C3—C4—S1' | 155 (3) | N2—C7—C8—C9 | −177.48 (14) |
| C2—C3—C4—S1 | −1.0 (5) | N2—C7—C8—C13 | 5.7 (3) |
| C2'—C1'—C4—C3 | 1.9 (12) | C13—C8—C9—F1 | −178.95 (13) |
| C2'—C1'—C4—C5 | 174.5 (10) | C7—C8—C9—F1 | 3.9 (2) |
| C2'—C1'—C4—S1' | −0.9 (13) | C13—C8—C9—C10 | 1.8 (2) |
| C2'—C1'—C4—S1 | −157 (4) | C7—C8—C9—C10 | −175.39 (14) |
| C3'—S1'—C4—C3 | −19 (3) | F1—C9—C10—C11 | 179.29 (14) |
| C3'—S1'—C4—C1' | 2.6 (10) | C8—C9—C10—C11 | −1.4 (2) |
| C3'—S1'—C4—C5 | −172.6 (9) | C9—C10—C11—C12 | 0.0 (2) |
| C3'—S1'—C4—S1 | 6.6 (9) | C10—C11—C12—C13 | 1.0 (2) |
| C1—S1—C4—C3 | 1.0 (3) | C11—C12—C13—F2 | 178.28 (14) |
| C1—S1—C4—C1' | 23 (3) | C11—C12—C13—C8 | −0.6 (2) |
| C1—S1—C4—C5 | 176.8 (2) | C9—C8—C13—F2 | −179.60 (13) |
| C1—S1—C4—S1' | −2.4 (3) | C7—C8—C13—F2 | −2.7 (2) |
| N2—N1—C5—O1 | 177.55 (13) | C9—C8—C13—C12 | −0.7 (2) |
| N2—N1—C5—C4 | −3.2 (2) | C7—C8—C13—C12 | 176.23 (15) |
| H··· | ||||
| N1—H1···O1i | 0.88 (2) | 1.97 (2) | 2.856 (2) | 174 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1i | 0.88 (2) | 1.97 (2) | 2.856 (2) | 174 (2) |
Symmetry code: (i) .