Literature DB >> 21580733

N'-(4-Chloro-benzyl-idene)thio-phene-2-carbohydrazide.

Jin-He Jiang1.   

Abstract

In the title compound, C(12)H(9)ClN(2)OS, the dihedral angle between the aromatic rings is 9.78 (11)°. In the crystal structure, inversion dimers linked by pairs of N-H⋯O hydrogen bonds occur, generating R(2) (2)(8) loops. Weak aromatic π-π stacking [centroid-centroid separations = 3.7210 (15) and 3.8706 (15) Å] also occurs.

Entities:  

Year:  2010        PMID: 21580733      PMCID: PMC2983898          DOI: 10.1107/S1600536810010615

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isostructural bromo-compound and background information, see the preceding paper: Jiang (2010 ▶).

Experimental

Crystal data

C12H9ClN2OS M = 264.72 Monoclinic, a = 6.0040 (12) Å b = 16.831 (3) Å c = 11.557 (2) Å β = 94.38 (3)° V = 1164.5 (4) Å3 Z = 4 Mo Kα radiation μ = 0.49 mm−1 T = 293 K 0.21 × 0.19 × 0.18 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.491, T max = 0.728 11069 measured reflections 2660 independent reflections 1778 reflections with I > 2σ(I) R int = 0.115

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.141 S = 0.94 2660 reflections 154 parameters H-atom parameters constrained Δρmax = 0.52 e Å−3 Δρmin = −0.33 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810010615/hb5369sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810010615/hb5369Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H9ClN2OSF(000) = 544
Mr = 264.72Dx = 1.510 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1778 reflections
a = 6.0040 (12) Åθ = 3–27.5°
b = 16.831 (3) ŵ = 0.49 mm1
c = 11.557 (2) ÅT = 293 K
β = 94.38 (3)°Block, colorless
V = 1164.5 (4) Å30.21 × 0.19 × 0.18 mm
Z = 4
Bruker SMART CCD diffractometer2660 independent reflections
Radiation source: fine-focus sealed tube1778 reflections with I > 2σ(I)
graphiteRint = 0.115
ω scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −7→7
Tmin = 0.491, Tmax = 0.728k = −21→21
11069 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141H-atom parameters constrained
S = 0.94w = 1/[σ2(Fo2) + (0.061P)2] where P = (Fo2 + 2Fc2)/3
2660 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.52 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.13248 (10)0.11796 (4)0.87758 (5)0.0454 (2)
Cl111.14308 (10)0.37422 (4)0.75642 (6)0.0564 (2)
C60.4682 (4)0.12975 (13)0.5974 (2)0.0415 (5)
H6A0.47930.10520.52600.050*
N10.3130 (3)0.10929 (11)0.66045 (16)0.0405 (5)
O1−0.1503 (3)−0.01594 (11)0.62318 (14)0.0543 (5)
N20.1660 (3)0.05312 (11)0.61567 (15)0.0435 (5)
H2A0.18690.03210.54950.052*
C4−0.0422 (3)0.05737 (13)0.79080 (18)0.0371 (5)
C100.9430 (3)0.30429 (13)0.7075 (2)0.0419 (5)
C5−0.0117 (3)0.02976 (13)0.67292 (19)0.0409 (5)
C120.6114 (4)0.23305 (15)0.7390 (2)0.0462 (6)
H12A0.49370.22220.78440.055*
C3−0.2281 (4)0.03656 (14)0.8471 (2)0.0448 (5)
H3A−0.34200.00430.81450.054*
C1−0.0417 (4)0.11356 (14)0.9866 (2)0.0474 (6)
H1A−0.01290.13891.05770.057*
C70.6284 (3)0.19098 (13)0.63533 (18)0.0385 (5)
C80.8067 (4)0.20886 (14)0.5689 (2)0.0452 (6)
H8A0.82000.18230.49920.054*
C110.7646 (4)0.28965 (15)0.7745 (2)0.0499 (6)
H11A0.74980.31800.84260.060*
C90.9633 (4)0.26525 (15)0.6049 (2)0.0465 (6)
H9A1.08140.27670.56010.056*
C2−0.2269 (4)0.06935 (15)0.9593 (2)0.0482 (6)
H2B−0.34010.06161.00880.058*
U11U22U33U12U13U23
S10.0461 (4)0.0519 (4)0.0386 (4)−0.0061 (3)0.0064 (3)−0.0075 (2)
Cl110.0523 (4)0.0568 (5)0.0598 (4)−0.0115 (3)0.0023 (3)0.0021 (3)
C60.0449 (12)0.0451 (14)0.0355 (11)0.0036 (10)0.0087 (10)−0.0003 (9)
N10.0414 (10)0.0429 (11)0.0375 (10)−0.0030 (8)0.0046 (8)−0.0026 (8)
O10.0608 (10)0.0597 (11)0.0433 (9)−0.0207 (9)0.0103 (8)−0.0127 (8)
N20.0453 (10)0.0479 (12)0.0381 (10)−0.0055 (9)0.0082 (8)−0.0093 (9)
C40.0402 (10)0.0361 (12)0.0349 (11)0.0006 (9)0.0020 (9)−0.0009 (9)
C100.0396 (11)0.0387 (13)0.0470 (13)−0.0025 (9)0.0017 (10)0.0067 (10)
C50.0434 (11)0.0403 (13)0.0387 (12)−0.0006 (10)0.0022 (9)−0.0013 (10)
C120.0448 (12)0.0498 (15)0.0458 (13)−0.0024 (11)0.0156 (10)−0.0004 (11)
C30.0450 (12)0.0451 (14)0.0447 (13)−0.0039 (10)0.0056 (10)−0.0021 (10)
C10.0563 (14)0.0494 (15)0.0373 (13)−0.0001 (11)0.0079 (11)−0.0047 (10)
C70.0388 (11)0.0399 (13)0.0370 (11)0.0033 (9)0.0046 (9)0.0054 (9)
C80.0467 (12)0.0491 (14)0.0413 (13)0.0022 (11)0.0127 (10)0.0000 (10)
C110.0550 (13)0.0530 (15)0.0426 (13)−0.0033 (12)0.0102 (11)−0.0072 (11)
C90.0430 (12)0.0514 (15)0.0465 (13)−0.0026 (11)0.0132 (10)0.0059 (11)
C20.0498 (13)0.0535 (15)0.0426 (13)0.0012 (11)0.0129 (10)−0.0008 (11)
S1—C11.699 (3)C12—C111.365 (3)
S1—C41.728 (2)C12—C71.402 (3)
Cl11—C101.745 (2)C12—H12A0.9300
C6—N11.273 (3)C3—C21.408 (3)
C6—C71.454 (3)C3—H3A0.9300
C6—H6A0.9300C1—C21.355 (3)
N1—N21.368 (2)C1—H1A0.9300
O1—C51.242 (3)C7—C81.397 (3)
N2—C51.356 (3)C8—C91.378 (3)
N2—H2A0.8600C8—H8A0.9300
C4—C31.379 (3)C11—H11A0.9300
C4—C51.464 (3)C9—H9A0.9300
C10—C91.369 (3)C2—H2B0.9300
C10—C111.392 (3)
C1—S1—C491.38 (11)C4—C3—H3A123.6
N1—C6—C7121.0 (2)C2—C3—H3A123.6
N1—C6—H6A119.5C2—C1—S1113.05 (18)
C7—C6—H6A119.5C2—C1—H1A123.5
C6—N1—N2116.72 (19)S1—C1—H1A123.5
C5—N2—N1121.65 (18)C8—C7—C12118.0 (2)
C5—N2—H2A119.2C8—C7—C6120.3 (2)
N1—N2—H2A119.2C12—C7—C6121.7 (2)
C3—C4—C5121.4 (2)C9—C8—C7121.1 (2)
C3—C4—S1110.67 (16)C9—C8—H8A119.5
C5—C4—S1127.88 (17)C7—C8—H8A119.5
C9—C10—C11121.4 (2)C12—C11—C10119.1 (2)
C9—C10—Cl11120.03 (18)C12—C11—H11A120.5
C11—C10—Cl11118.62 (18)C10—C11—H11A120.5
O1—C5—N2118.6 (2)C10—C9—C8119.3 (2)
O1—C5—C4120.0 (2)C10—C9—H9A120.4
N2—C5—C4121.4 (2)C8—C9—H9A120.4
C11—C12—C7121.2 (2)C1—C2—C3112.1 (2)
C11—C12—H12A119.4C1—C2—H2B124.0
C7—C12—H12A119.4C3—C2—H2B124.0
C4—C3—C2112.8 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O1i0.862.012.825 (2)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O1i0.862.012.825 (2)158

Symmetry code: (i) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N'-(4-Bromo-benzyl-idene)thio-phene-2-carbohydrazide.

Authors:  Jin-He Jiang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-27
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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-27

2.  N'-[(1E)-(4-Fluoro-phen-yl)methyl-idene]thio-phene-2-carbohydrazide.

Authors:  Amer M Alanazi; Siham Lahsasni; Ali A El-Emam; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11

3.  N'-[(E)-2-Chloro-benzyl-idene]thio-phene-2-carbohydrazide.

Authors:  Ismail Warad; Salim F Haddad; Mousa Al-Noaimi; Belkheir Hammouti; Taibi Ben Hadda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-17
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