Literature DB >> 21580732

N'-(4-Bromo-benzyl-idene)thio-phene-2-carbohydrazide.

Jin-He Jiang1.   

Abstract

In the title compound, C(12)H(9)BrN(2)OS, the dihedral angle between the aromatic rings is 10.0 (2)°. In the crystal structure, inversion dimers linked by pairs of N-H⋯O hydrogen bonds occur, generating R(2) (2)(8) loops. Weak aromatic π-π stacking [centroid-centroid separations = 3.825 (3) and 3.866 (3) Å] also occurs.

Entities:  

Year:  2010        PMID: 21580732      PMCID: PMC2984088          DOI: 10.1107/S1600536810010603

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to Schiff bases, see: Cimerman et al. (1997 ▶). For a related structure, see: Girgis (2006 ▶).

Experimental

Crystal data

C12H9BrN2OS M = 309.18 Monoclinic, a = 6.0700 (12) Å b = 16.983 (3) Å c = 11.643 (2) Å β = 94.85 (3)° V = 1195.9 (4) Å3 Z = 4 Mo Kα radiation μ = 3.60 mm−1 T = 293 K 0.23 × 0.20 × 0.18 mm

Data collection

Bruker SMART CCD diffractometer 8238 measured reflections 2079 independent reflections 1614 reflections with I > 2σ(I) R int = 0.086

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.163 S = 1.03 2079 reflections 154 parameters H-atom parameters constrained Δρmax = 0.75 e Å−3 Δρmin = −0.84 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810010603/hb5368sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810010603/hb5368Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H9BrN2OSF(000) = 616
Mr = 309.18Dx = 1.717 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1614 reflections
a = 6.0700 (12) Åθ = 3.5–25.3°
b = 16.983 (3) ŵ = 3.60 mm1
c = 11.643 (2) ÅT = 293 K
β = 94.85 (3)°Block, colorless
V = 1195.9 (4) Å30.23 × 0.20 × 0.18 mm
Z = 4
Bruker SMART CCD diffractometer1614 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.086
graphiteθmax = 25.3°, θmin = 3.5°
ω scansh = −6→7
8238 measured reflectionsk = −19→19
2079 independent reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.163H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
2079 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.75 e Å3
0 restraintsΔρmin = −0.84 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.15443 (9)0.87907 (3)0.25958 (4)0.0509 (3)
S1−0.8655 (2)0.61910 (7)0.37457 (11)0.0437 (4)
C6−0.5332 (9)0.6311 (2)0.0959 (4)0.0382 (11)
H6A−0.52110.60610.02560.046*
N2−0.6908 (7)0.61169 (19)0.1589 (3)0.0390 (9)
C10−0.0606 (8)0.8041 (3)0.2068 (4)0.0396 (11)
N1−0.8383 (6)0.5559 (2)0.1135 (3)0.0390 (9)
H1A−0.81930.53530.04750.047*
O1−1.1473 (6)0.4869 (2)0.1217 (3)0.0526 (9)
C5−1.0117 (8)0.5329 (2)0.1702 (4)0.0401 (11)
C1−1.0383 (9)0.6136 (3)0.4824 (5)0.0466 (13)
H1B−1.00990.63830.55340.056*
C3−1.2229 (8)0.5388 (3)0.3431 (4)0.0431 (11)
H3A−1.33660.50750.30990.052*
C11−0.2387 (9)0.7887 (3)0.2738 (4)0.0456 (12)
H11A−0.25290.81630.34180.055*
C7−0.3756 (7)0.6916 (2)0.1350 (4)0.0363 (10)
C12−0.3902 (8)0.7326 (3)0.2374 (4)0.0449 (12)
H12A−0.50610.72170.28220.054*
C4−1.0404 (8)0.5594 (2)0.2876 (4)0.0381 (10)
C9−0.0451 (8)0.7655 (2)0.1054 (4)0.0430 (11)
H9A0.07050.77670.06040.052*
C8−0.2019 (9)0.7093 (3)0.0693 (4)0.0445 (12)
H8A−0.19030.6832−0.00010.053*
C2−1.2204 (8)0.5698 (2)0.4544 (4)0.0433 (11)
H2B−1.33120.56120.50340.052*
U11U22U33U12U13U23
Br10.0496 (5)0.0514 (4)0.0511 (5)−0.01021 (19)0.0003 (3)0.00256 (19)
S10.0465 (8)0.0495 (8)0.0352 (8)−0.0095 (5)0.0039 (6)−0.0090 (5)
C60.049 (3)0.036 (2)0.029 (3)0.002 (2)0.002 (2)0.0009 (17)
N20.046 (3)0.0360 (19)0.034 (2)−0.0016 (16)−0.0017 (18)−0.0028 (15)
C100.042 (3)0.038 (2)0.039 (3)0.0005 (19)0.002 (2)0.0079 (18)
N10.041 (2)0.040 (2)0.036 (2)−0.0064 (17)0.0026 (17)−0.0082 (15)
O10.060 (3)0.055 (2)0.042 (2)−0.0194 (17)0.0048 (17)−0.0114 (15)
C50.047 (3)0.034 (2)0.039 (3)−0.006 (2)−0.001 (2)−0.0020 (18)
C10.050 (3)0.055 (3)0.035 (3)0.003 (2)0.007 (2)−0.009 (2)
C30.044 (3)0.046 (3)0.039 (3)−0.010 (2)0.006 (2)−0.005 (2)
C110.051 (3)0.049 (3)0.037 (3)−0.008 (2)0.009 (2)−0.008 (2)
C70.036 (3)0.038 (2)0.035 (3)0.0043 (19)0.0031 (19)0.0085 (18)
C120.037 (3)0.051 (3)0.048 (3)−0.007 (2)0.012 (2)−0.004 (2)
C40.048 (3)0.033 (2)0.033 (3)0.0037 (19)−0.002 (2)−0.0031 (16)
C90.042 (3)0.040 (2)0.048 (3)0.002 (2)0.012 (2)0.005 (2)
C80.058 (3)0.041 (2)0.036 (3)0.000 (2)0.010 (2)−0.0029 (19)
C20.040 (3)0.049 (3)0.043 (3)−0.001 (2)0.013 (2)−0.004 (2)
Br1—C101.889 (5)C1—H1B0.9300
S1—C11.705 (5)C3—C41.374 (7)
S1—C41.732 (5)C3—C21.397 (6)
C6—N21.296 (6)C3—H3A0.9300
C6—C71.450 (7)C11—C121.366 (7)
C6—H6A0.9300C11—H11A0.9300
N2—N11.378 (5)C7—C81.387 (6)
C10—C91.360 (6)C7—C121.391 (6)
C10—C111.410 (7)C12—H12A0.9300
N1—C51.347 (6)C9—C81.387 (7)
N1—H1A0.8600C9—H9A0.9300
O1—C51.236 (5)C8—H8A0.9300
C5—C41.464 (6)C2—H2B0.9300
C1—C21.349 (7)
C1—S1—C490.8 (2)C12—C11—H11A120.5
N2—C6—C7120.1 (4)C10—C11—H11A120.5
N2—C6—H6A120.0C8—C7—C12118.0 (4)
C7—C6—H6A120.0C8—C7—C6119.6 (4)
C6—N2—N1116.4 (4)C12—C7—C6122.4 (4)
C9—C10—C11120.2 (5)C11—C12—C7121.8 (4)
C9—C10—Br1120.7 (4)C11—C12—H12A119.1
C11—C10—Br1119.1 (4)C7—C12—H12A119.1
C5—N1—N2121.4 (4)C3—C4—C5121.7 (4)
C5—N1—H1A119.3C3—C4—S1110.6 (3)
N2—N1—H1A119.3C5—C4—S1127.7 (4)
O1—C5—N1118.5 (4)C10—C9—C8119.9 (4)
O1—C5—C4119.6 (4)C10—C9—H9A120.1
N1—C5—C4121.9 (4)C8—C9—H9A120.1
C2—C1—S1113.3 (4)C7—C8—C9121.1 (4)
C2—C1—H1B123.4C7—C8—H8A119.4
S1—C1—H1B123.4C9—C8—H8A119.4
C4—C3—C2113.2 (4)C1—C2—C3112.1 (4)
C4—C3—H3A123.4C1—C2—H2B124.0
C2—C3—H3A123.4C3—C2—H2B124.0
C12—C11—C10119.0 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.862.002.828 (5)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.862.002.828 (5)161

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  N'-[(5-Methyl-2-fur-yl)methyl-ene]thio-phene-2-carbohydrazide.

Authors:  Jin-He Jiang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-27

2.  N'-(4-Chloro-benzyl-idene)thio-phene-2-carbohydrazide.

Authors:  Jin-He Jiang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-27

3.  N'-(4-Cyano-benzyl-idene)thio-phene-2-carbohydrazide.

Authors:  Yu-Feng Li; Fu-Gong Zhang; Fang-Fang Jian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-26

4.  N'-[(1E)-(4-Fluoro-phen-yl)methyl-idene]thio-phene-2-carbohydrazide.

Authors:  Amer M Alanazi; Siham Lahsasni; Ali A El-Emam; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11
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