Literature DB >> 22327774

Effect of water coordination on competition between π and non-π cation binding sites in aromatic amino acids: L-phenylalanine, L-tyrosine, and L-tryptophan Li+, Na +, and K+ complexes.

Milan Remko1, Stanislava Šoralová.   

Abstract

Quantum chemistry methods have been applied to charged complexes of the alkali metals Li(+), Na(+), and K(+) with the aromatic amino acids (AAAs) phenylalanine (Phe), tyrosine (Tyr), and tryptophan (Trp). The geometries of 72 different complexes (Phe·M, Tyr·M, Trp·M, M is Li(+), Na(+), or K(+)) were completely optimized at the B3LYP/6-311+G(d,p) level of density functional theory. The solvent effect on the geometry and stability of individual complexes was studied by making use of a microsolvation model. The interaction enthalpies, entropies, and Gibbs energies of nine different complexes of the systems Phe·M, Tyr·M, and Trp·M (M is Li(+), Na(+), or K(+)) were also determined at the B3LYP density functional level of theory. The calculated Gibbs binding energies of the M(+)-AAA complexes follow the order Phe < Tyr < Trp for all three metal cations studied. Among the three AAAs studied, the indole ring of Trp is the best π donor for alkali metal cations. Our calculations demonstrated the existence of strong cation-π interactions between the alkali metals and the aromatic side chains of the three AAAs. These AAAs comprise about 8% of all known protein sequences. Thus, besides the potential for hydrogen-bond interaction, aromatic residues of Phe, Tyr, and Trp show great potential for π-donor interactions. The existence of cation-π interaction in proteins has also been demonstrated experimentally. However, more complex experimental studies of metal cation-π interaction in diverse biological systems will no doubt lead to more exact validation of these investigations. © SBIC 2012

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Year:  2012        PMID: 22327774     DOI: 10.1007/s00775-012-0882-3

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  36 in total

1.  The Cationminus signpi Interaction.

Authors:  Jennifer C. Ma; Dennis A. Dougherty
Journal:  Chem Rev       Date:  1997-08-05       Impact factor: 60.622

2.  General performance of density functionals.

Authors:  Sérgio Filipe Sousa; Pedro Alexandrino Fernandes; Maria João Ramos
Journal:  J Phys Chem A       Date:  2007-08-25       Impact factor: 2.781

3.  MD simulation of the Na+-phenylalanine complex in water: competition between cation-pi interaction and aqueous solvation.

Authors:  Francesca Costanzo; Raffaele Guido Della Valle; Vincenzo Barone
Journal:  J Phys Chem B       Date:  2005-12-08       Impact factor: 2.991

4.  Peptidic models for the binding of Pb(II), Bi(III) and Cd(II) to mononuclear thiolate binding sites.

Authors:  Manolis Matzapetakis; Debdip Ghosh; Tsu-Chien Weng; James E Penner-Hahn; Vincent L Pecoraro
Journal:  J Biol Inorg Chem       Date:  2006-07-20       Impact factor: 3.358

5.  Infrared spectroscopy of phenylalanine Ag(I) and Zn(II) complexes in the gas phase.

Authors:  Nick C Polfer; Jos Oomens; David T Moore; Gert von Helden; Gerard Meijer; Robert C Dunbar
Journal:  J Am Chem Soc       Date:  2006-01-18       Impact factor: 15.419

6.  Competition between pi and non-pi cation-binding sites in aromatic amino acids: a theoretical study of alkali metal cation (Li+, Na+, K+)-phenylalanine complexes.

Authors:  Fung Ming Siu; Ngai Ling Ma; Chun Wai Tsang
Journal:  Chemistry       Date:  2004-04-19       Impact factor: 5.236

7.  Computational studies of the photophysics of neutral and zwitterionic amino acids in an aqueous environment: tyrosine-(H(2)O)(2) and tryptophan-(H(2)O)(2) clusters.

Authors:  Andrzej L Sobolewski; Dorit Shemesh; Wolfgang Domcke
Journal:  J Phys Chem A       Date:  2009-01-22       Impact factor: 2.781

8.  Effects of alkaline earth metal ion complexation on amino acid zwitterion stability: results from infrared action spectroscopy.

Authors:  Matthew F Bush; Jos Oomens; Richard J Saykally; Evan R Williams
Journal:  J Am Chem Soc       Date:  2008-04-29       Impact factor: 15.419

9.  Structure of cationized arginine (arg.m, m = h, li, na, k, rb, and cs) in the gas phase: further evidence for zwitterionic arginine.

Authors:  R A Jockusch; W D Price; E R Williams
Journal:  J Phys Chem A       Date:  1999-11-18       Impact factor: 2.781

10.  A comparison of the binding affinity of the common amino acids with different metal cations.

Authors:  Jesús Jover; Ramón Bosque; Joaquim Sales
Journal:  Dalton Trans       Date:  2008-10-08       Impact factor: 4.390

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  1 in total

1.  Structures of a Na+-coupled, substrate-bound MATE multidrug transporter.

Authors:  Min Lu; Jindrich Symersky; Martha Radchenko; Akiko Koide; Yi Guo; Rongxin Nie; Shohei Koide
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-22       Impact factor: 11.205

  1 in total

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