Literature DB >> 16479275

Structure of cationized arginine (arg.m, m = h, li, na, k, rb, and cs) in the gas phase: further evidence for zwitterionic arginine.

R A Jockusch1, W D Price, E R Williams.   

Abstract

The gas-phase structures of cationized arginine, Arg.M(+), M = Li, Na, K, Rb, and Cs, were studied both by hybrid method density functional theory calculations and experimentally using low-energy collisionally activated and thermal radiative dissociation. Calculations at the B3LYP/LACVP++** level of theory show that the salt-bridge structures in which the arginine is a zwitterion (protonated side chain, deprotonated C-terminus) become more stable than the charge-solvated structures with increasing metal ion size. The difference in energy between the most stable charge-solvated structure and salt-bridge structure of Arg.M(+) increases from -0.7 kcal/mol for Arg.Li(+) to +3.3 kcal/mol for Arg.Cs(+). The stabilities of the salt-bridge and charge-solvated structures reverse between M = Li and Na. These calculations are in good agreement with the results of dissociation experiments. The low-energy dissociation pathways depend on the cation size. Arginine complexed with small cations (Li and Na) loses H(2)O, while arginine complexed with larger cations (K, Rb, and Cs) loses NH(3). Loss of H(2)O must come from a charge-solvated ion, whereas the loss of NH(3) can come from the protonated side chain of a salt-bridge structure. The results of dissociation experiments using several cationized arginine derivatives are consistent with the existence of these two distinct structures. In particular, arginine methyl esters, which cannot form salt bridges, dissociate by loss of methanol, analogous to loss of H(2)O from Arg.M(+); no loss of NH(3) is observed. Although dissociation experiments probe gas-phase structure indirectly, the observed fragmentation pathways are in good agreement with the calculated lowest energy isomers. The combination of the results from experiment and theory provides strong evidence that the structure of arginine-alkali metal ion complexes in the gas phase changes from a charge-solvated structure to a salt-bridge structure as the size of the metal ion increases.

Entities:  

Year:  1999        PMID: 16479275      PMCID: PMC1365274          DOI: 10.1021/jp9931307

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  8 in total

1.  Unimolecular reaction kinetics in the high-pressure limit without collisions.

Authors:  W D Price; P D Schnier; R A Jockusch; E F Strittmatter; E R Williams
Journal:  J Am Chem Soc       Date:  1996-10-30       Impact factor: 15.419

2.  Is arginine a zwitterion in the gas phase?

Authors:  W D Price; R A Jockusch; E R Williams
Journal:  J Am Chem Soc       Date:  1997-12-10       Impact factor: 15.419

3.  Role of the site of protonation in the low-energy decompositions of gas-phase peptide ions.

Authors:  K A Cox; S J Gaskell; M Morris; A Whiting
Journal:  J Am Soc Mass Spectrom       Date:  1996-06       Impact factor: 3.109

4.  Tandem mass spectrometry of large biomolecule ions by blackbody infrared radiative dissociation.

Authors:  W D Price; P D Schnier; E R Williams
Journal:  Anal Chem       Date:  1996-03-01       Impact factor: 6.986

5.  Identification of the facile gas-phase cleavage of the Asp-Pro and Asp-Xxx peptide bonds in matrix-assisted laser desorption time-of-flight mass spectrometry.

Authors:  W Yu; J E Vath; M C Huberty; S A Martin
Journal:  Anal Chem       Date:  1993-11-01       Impact factor: 6.986

6.  Effects of charge state on fragmentation pathways, dynamics, and activation energies of ubiquitin ions measured by blackbody infrared radiative dissociation.

Authors:  R A Jockusch; P D Schnier; W D Price; E F Strittmatter; P A Demirev; E R Williams
Journal:  Anal Chem       Date:  1997-03-15       Impact factor: 6.986

7.  Effect of the position of a basic amino acid on C-terminal rearrangement of protonated peptides upon collision-induced dissociation.

Authors:  J Gonzalez; V Besada; H Garay; O Reyes; G Padron; Y Tambara; T Takao; Y Shimonishi
Journal:  J Mass Spectrom       Date:  1996-02       Impact factor: 1.982

8.  Blackbody infrared radiative dissociation of bradykinin and its analogues: energetics, dynamics, and evidence for salt-bridge structures in the gas phase.

Authors:  P D Schnier; W D Price; R A Jockusch; E R Williams
Journal:  J Am Chem Soc       Date:  1996-07-31       Impact factor: 15.419

  8 in total
  22 in total

1.  The role of acidic residues and of sodium ion adduction on the gas-phase H/D exchange of peptides and peptide dimers.

Authors:  John C Jurchen; Russell E Cooper; Evan R Williams
Journal:  J Am Soc Mass Spectrom       Date:  2003-12       Impact factor: 3.109

2.  Structures of protonated arginine dimer and bradykinin investigated by density functional theory: further support for stable gas-phase salt bridges.

Authors:  E F Strittmatter; E R Williams
Journal:  J Phys Chem A       Date:  2000-06-29       Impact factor: 2.781

3.  Gas-phase basicity of (CH3)3N+-C6H4-COO- zwitterions: a new class of organic super bases.

Authors:  E F Strittmatter; R L Wong; E R Williams
Journal:  J Am Chem Soc       Date:  2000-02-16       Impact factor: 15.419

4.  A mechanistic study of the H/D exchange reactions of protonated arginine and arginine-containing di- and tripeptides.

Authors:  Yiqun Huang; Joe A Marini; John A McLean; Shane E Tichy; David H Russell
Journal:  J Am Soc Mass Spectrom       Date:  2009-07-30       Impact factor: 3.109

5.  Infrared spectroscopy of cationized arginine in the gas phase: direct evidence for the transition from nonzwitterionic to zwitterionic structure.

Authors:  Matthew F Bush; Jeremy T O'Brien; James S Prell; Richard J Saykally; Evan R Williams
Journal:  J Am Chem Soc       Date:  2007-01-24       Impact factor: 15.419

6.  Effect of metal Ions (Ni²⁺, Cu²⁺ and Zn²⁺) and water coordination on the structure of L-phenylalanine, L-tyrosine, L-tryptophan and their zwitterionic forms.

Authors:  Milan Remko; Daniel Fitz; Ria Broer; Bernd Michael Rode
Journal:  J Mol Model       Date:  2011-03-02       Impact factor: 1.810

7.  Effects of alkali metal ion cationization on fragmentation pathways of triazole-epothilone.

Authors:  Xiyan Duan; Guoan Luo; Yue Chen; Xianglei Kong
Journal:  J Am Soc Mass Spectrom       Date:  2012-03-31       Impact factor: 3.109

8.  Leaving group and gas phase neighboring group effects in the side chain losses from protonated serine and its derivatives.

Authors:  G E Reid; R J Simpson; R A O'Hair
Journal:  J Am Soc Mass Spectrom       Date:  2000-12       Impact factor: 3.109

9.  Divalent metal ion-peptide interactions probed by electron capture dissociation of trications.

Authors:  Haichuan Liu; Kristina Håkansson
Journal:  J Am Soc Mass Spectrom       Date:  2006-09-06       Impact factor: 3.109

10.  Binding energies of water to lithiated valine: formation of solution-phase structure in vacuo.

Authors:  Andrew S Lemoff; Evan R Williams
Journal:  J Am Soc Mass Spectrom       Date:  2004-07       Impact factor: 3.109

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