Literature DB >> 22325263

Different cell fates from cell-cell interactions: core architectures of two-cell bistable networks.

Hervé Rouault1, Vincent Hakim.   

Abstract

The acquisition of different fates by cells that are initially in the same state is central to development. Here, we investigate the possible structures of bistable genetic networks that can allow two identical cells to acquire different fates through cell-cell interactions. Cell-autonomous bistable networks have been previously sampled using an evolutionary algorithm. We extend this evolutionary procedure to take into account interactions between cells. We obtain a variety of simple bistable networks that we classify into major subtypes. Some have long been proposed in the context of lateral inhibition through the Notch-Delta pathway, some have been more recently considered and others appear to be new and based on mechanisms not previously considered. The results highlight the role of posttranscriptional interactions and particularly of protein complexation and sequestration, which can replace cooperativity in transcriptional interactions. Some bistable networks are entirely based on posttranscriptional interactions and the simplest of these is found to lead, upon a single parameter change, to oscillations in the two cells with opposite phases. We provide qualitative explanations as well as mathematical analyses of the dynamical behaviors of various created networks. The results should help to identify and understand genetic structures implicated in cell-cell interactions and differentiation. Copyright Â
© 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Mesh:

Year:  2012        PMID: 22325263      PMCID: PMC3274795          DOI: 10.1016/j.bpj.2011.11.4022

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  43 in total

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3.  {gamma}-Protocadherins, presenilin-mediated release of C-terminal fragment promotes locus expression.

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4.  Minimal model of spiky oscillations in NF-kappaB signaling.

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Journal:  Biosystems       Date:  2007-10-05       Impact factor: 1.973

6.  Predictive behavior within microbial genetic networks.

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7.  Oscillations in notch signaling regulate maintenance of neural progenitors.

Authors:  Hiromi Shimojo; Toshiyuki Ohtsuka; Ryoichiro Kageyama
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Review 8.  Vulval development.

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9.  Deriving structure from evolution: metazoan segmentation.

Authors:  Paul François; Vincent Hakim; Eric D Siggia
Journal:  Mol Syst Biol       Date:  2007-12-18       Impact factor: 11.429

10.  Network evolution of body plans.

Authors:  Koichi Fujimoto; Shuji Ishihara; Kunihiko Kaneko
Journal:  PLoS One       Date:  2008-07-23       Impact factor: 3.240

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  12 in total

1.  An analytical approach to bistable biological circuit discrimination using real algebraic geometry.

Authors:  Dan Siegal-Gaskins; Elisa Franco; Tiffany Zhou; Richard M Murray
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Review 2.  Dissipative structures in biological systems: bistability, oscillations, spatial patterns and waves.

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Journal:  Philos Trans A Math Phys Eng Sci       Date:  2018-07-28       Impact factor: 4.226

3.  Phenotypic models of evolution and development: geometry as destiny.

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Review 4.  Criticality in cell differentiation.

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Review 5.  Optical control and study of biological processes at the single-cell level in a live organism.

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Journal:  Rep Prog Phys       Date:  2013-06-14

6.  Cell Fate Specification Based on Tristability in the Inner Cell Mass of Mouse Blastocysts.

Authors:  Laurane De Mot; Didier Gonze; Sylvain Bessonnard; Claire Chazaud; Albert Goldbeter; Geneviève Dupont
Journal:  Biophys J       Date:  2016-02-02       Impact factor: 4.033

7.  Competition in notch signaling with cis enriches cell fate decisions.

Authors:  Pau Formosa-Jordan; Marta Ibañes
Journal:  PLoS One       Date:  2014-04-29       Impact factor: 3.240

8.  A network-based method using a random walk with restart algorithm and screening tests to identify novel genes associated with Menière's disease.

Authors:  Lin Li; YanShu Wang; Lifeng An; XiangYin Kong; Tao Huang
Journal:  PLoS One       Date:  2017-08-07       Impact factor: 3.240

9.  A spectrum of modularity in multi-functional gene circuits.

Authors:  Alba Jiménez; James Cotterell; Andreea Munteanu; James Sharpe
Journal:  Mol Syst Biol       Date:  2017-04-27       Impact factor: 11.429

Review 10.  Deciphering cell-cell interactions and communication from gene expression.

Authors:  Erick Armingol; Adam Officer; Olivier Harismendy; Nathan E Lewis
Journal:  Nat Rev Genet       Date:  2020-11-09       Impact factor: 59.581

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