Literature DB >> 29891498

Dissipative structures in biological systems: bistability, oscillations, spatial patterns and waves.

Albert Goldbeter1.   

Abstract

The goal of this review article is to assess how relevant is the concept of dissipative structure for understanding the dynamical bases of non-equilibrium self-organization in biological systems, and to see where it has been applied in the five decades since it was initially proposed by Ilya Prigogine. Dissipative structures can be classified into four types, which will be considered, in turn, and illustrated by biological examples: (i) multistability, in the form of bistability and tristability, which involve the coexistence of two or three stable steady states, or in the form of birhythmicity, which involves the coexistence between two stable rhythms; (ii) temporal dissipative structures in the form of sustained oscillations, illustrated by biological rhythms; (iii) spatial dissipative structures, known as Turing patterns; and (iv) spatio-temporal structures in the form of propagating waves. Rhythms occur with widely different periods at all levels of biological organization, from neural, cardiac and metabolic oscillations to circadian clocks and the cell cycle; they play key roles in physiology and in many disorders. New rhythms are being uncovered while artificial ones are produced by synthetic biology. Rhythms provide the richest source of examples of dissipative structures in biological systems. Bistability has been observed experimentally, but has primarily been investigated in theoretical models in an increasingly wide range of biological contexts, from the genetic to the cell and animal population levels, both in physiological conditions and in disease. Bistable transitions have been implicated in the progression between the different phases of the cell cycle and, more generally, in the process of cell fate specification in the developing embryo. Turing patterns are exemplified by the formation of some periodic structures in the course of development and by skin stripe patterns in animals. Spatio-temporal patterns in the form of propagating waves are observed within cells as well as in intercellular communication. This review illustrates how dissipative structures of all sorts abound in biological systems.This article is part of the theme issue 'Dissipative structures in matter out of equilibrium: from chemistry, photonics and biology (part 1)'.
© 2018 The Author(s).

Entities:  

Keywords:  Turing patterns; biological rhythms; bistability; dissipative structures; oscillations; propagating waves

Mesh:

Year:  2018        PMID: 29891498      PMCID: PMC6000149          DOI: 10.1098/rsta.2017.0376

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  197 in total

1.  Protein-protein interactions generate hidden feedback and feed-forward loops to trigger bistable switches, oscillations and biphasic dose-responses.

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Journal:  Mol Biosyst       Date:  2015-10

2.  A minimal cascade model for the mitotic oscillator involving cyclin and cdc2 kinase.

Authors:  A Goldbeter
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-15       Impact factor: 11.205

3.  A putative flip-flop switch for control of REM sleep.

Authors:  Jun Lu; David Sherman; Marshall Devor; Clifford B Saper
Journal:  Nature       Date:  2006-05-10       Impact factor: 49.962

4.  Modeling digits. Digit patterning is controlled by a Bmp-Sox9-Wnt Turing network modulated by morphogen gradients.

Authors:  J Raspopovic; L Marcon; L Russo; J Sharpe
Journal:  Science       Date:  2014-08-01       Impact factor: 47.728

5.  Mitotic waves in the early embryogenesis of Drosophila: Bistability traded for speed.

Authors:  Massimo Vergassola; Victoria E Deneke; Stefano Di Talia
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-15       Impact factor: 11.205

Review 6.  Circadian rhythm sleep disorders: pathophysiology and treatment.

Authors:  G S Richardson; H V Malin
Journal:  J Clin Neurophysiol       Date:  1996-01       Impact factor: 2.177

7.  Bistability in autoimmune diseases.

Authors:  Nicolas Rapin; Erik Mosekilde; Ole Lund
Journal:  Autoimmunity       Date:  2011-01-19       Impact factor: 2.815

8.  A molecular model for intercellular synchronization in the mammalian circadian clock.

Authors:  Tsz-Leung To; Michael A Henson; Erik D Herzog; Francis J Doyle
Journal:  Biophys J       Date:  2007-03-16       Impact factor: 4.033

9.  Frequency-modulated nuclear localization bursts coordinate gene regulation.

Authors:  Long Cai; Chiraj K Dalal; Michael B Elowitz
Journal:  Nature       Date:  2008-09-25       Impact factor: 49.962

10.  Spontaneous NF-κB activation by autocrine TNFα signaling: a computational analysis.

Authors:  Jakub Pękalski; Pawel J Zuk; Marek Kochańczyk; Michael Junkin; Ryan Kellogg; Savaş Tay; Tomasz Lipniacki
Journal:  PLoS One       Date:  2013-11-11       Impact factor: 3.240

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  16 in total

1.  Dissipative structures in matter out of equilibrium: from chemistry, photonics and biology, the legacy of Ilya Prigogine (part 1).

Authors:  M Tlidi; M G Clerc; K Panajotov
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2018-07-28       Impact factor: 4.226

Review 2.  From embryos to embryoids: How external signals and self-organization drive embryonic development.

Authors:  J Serrano Morales; Jelena Raspopovic; Luciano Marcon
Journal:  Stem Cell Reports       Date:  2021-05-11       Impact factor: 7.765

3.  Structural and Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level.

Authors:  Xingcheng Lin; Prakash Kulkarni; Federico Bocci; Nicholas P Schafer; Susmita Roy; Min-Yeh Tsai; Yanan He; Yihong Chen; Krithika Rajagopalan; Steven M Mooney; Yu Zeng; Keith Weninger; Alex Grishaev; José N Onuchic; Herbert Levine; Peter G Wolynes; Ravi Salgia; Govindan Rangarajan; Vladimir Uversky; John Orban; Mohit Kumar Jolly
Journal:  Biomolecules       Date:  2019-02-22

4.  Multi-rhythmicity generated by coupling two cellular rhythms.

Authors:  Jie Yan; Albert Goldbeter
Journal:  J R Soc Interface       Date:  2019-03-29       Impact factor: 4.118

5.  Dynamic bistable switches enhance robustness and accuracy of cell cycle transitions.

Authors:  Jan Rombouts; Lendert Gelens
Journal:  PLoS Comput Biol       Date:  2021-01-07       Impact factor: 4.475

6.  Molecules, Information and the Origin of Life: What Is Next?

Authors:  Salvatore Chirumbolo; Antonio Vella
Journal:  Molecules       Date:  2021-02-14       Impact factor: 4.411

7.  MicroRNA governs bistable cell differentiation and lineage segregation via a noncanonical feedback.

Authors:  Chung-Jung Li; Ee Shan Liau; Yi-Han Lee; Yang-Zhe Huang; Ziyi Liu; Andrew Willems; Victoria Garside; Edwina McGlinn; Jun-An Chen; Tian Hong
Journal:  Mol Syst Biol       Date:  2021-04       Impact factor: 11.429

Review 8.  Self-Organization and Information Processing: From Basic Enzymatic Activities to Complex Adaptive Cellular Behavior.

Authors:  Ildefonso M De la Fuente; Luis Martínez; Jose Carrasco-Pujante; Maria Fedetz; José I López; Iker Malaina
Journal:  Front Genet       Date:  2021-05-21       Impact factor: 4.599

9.  Activation of Functional Brain Networks in Children With Psychogenic Non-epileptic Seizures.

Authors:  Mohammadreza Radmanesh; Mahdi Jalili; Kasia Kozlowska
Journal:  Front Hum Neurosci       Date:  2020-08-25       Impact factor: 3.169

10.  Robust synchronization of the cell cycle and the circadian clock through bidirectional coupling.

Authors:  Jie Yan; Albert Goldbeter
Journal:  J R Soc Interface       Date:  2019-09-11       Impact factor: 4.118

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