Literature DB >> 22312046

The impact of recent events on human genetic diversity.

Mark A Jobling1.   

Abstract

The historical record tells us stories of migrations, population expansions and colonization events in the last few thousand years, but what was their demographic impact? Genetics can throw light on this issue, and has mostly done so through the maternally inherited mitochondrial DNA (mtDNA) and the male-specific Y chromosome. However, there are a number of problems, including marker ascertainment bias, possible influences of natural selection, and the obscuring layers of the palimpsest of historical and prehistorical events. Y-chromosomal lineages are particularly affected by genetic drift, which can be accentuated by recent social selection. A diversity of approaches to expansions in Europe is yielding insights into the histories of Phoenicians, Roma, Anglo-Saxons and Vikings, and new methods for producing and analysing genome-wide data hold much promise. The field would benefit from more consensus on appropriate methods, and better communication between geneticists and experts in other disciplines, such as history, archaeology and linguistics.

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Year:  2012        PMID: 22312046      PMCID: PMC3267116          DOI: 10.1098/rstb.2011.0297

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  64 in total

1.  Inference of population structure using multilocus genotype data.

Authors:  J K Pritchard; M Stephens; P Donnelly
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

2.  Larger genetic differences within africans than between Africans and Eurasians.

Authors:  Ning Yu; Feng-Chi Chen; Satoshi Ota; Lynn B Jorde; Pekka Pamilo; Laszlo Patthy; Michele Ramsay; Trefor Jenkins; Song-Kun Shyue; Wen-Hsiung Li
Journal:  Genetics       Date:  2002-05       Impact factor: 4.562

3.  The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time.

Authors:  Lev A Zhivotovsky; Peter A Underhill; Cengiz Cinnioğlu; Manfred Kayser; Bharti Morar; Toomas Kivisild; Rosaria Scozzari; Fulvio Cruciani; Giovanni Destro-Bisol; Gabriella Spedini; Geoffrey K Chambers; Rene J Herrera; Kiau Kiun Yong; David Gresham; Ivailo Tournev; Marcus W Feldman; Luba Kalaydjieva
Journal:  Am J Hum Genet       Date:  2003-12-19       Impact factor: 11.025

Review 4.  The human Y chromosome: an evolutionary marker comes of age.

Authors:  Mark A Jobling; Chris Tyler-Smith
Journal:  Nat Rev Genet       Date:  2003-08       Impact factor: 53.242

5.  Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa.

Authors:  Sohini Ramachandran; Omkar Deshpande; Charles C Roseman; Noah A Rosenberg; Marcus W Feldman; L Luca Cavalli-Sforza
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-21       Impact factor: 11.205

6.  Mitochondrial DNA and survival after sepsis: a prospective study.

Authors:  Simon V Baudouin; David Saunders; Watcharee Tiangyou; Joanna L Elson; Jayne Poynter; Angela Pyle; Sharon Keers; Douglass M Turnbull; Neil Howell; Patrick F Chinnery
Journal:  Lancet       Date:  2005-12-17       Impact factor: 79.321

Review 7.  Next-generation DNA sequencing methods.

Authors:  Elaine R Mardis
Journal:  Annu Rev Genomics Hum Genet       Date:  2008       Impact factor: 8.929

8.  Mutation rates at Y chromosome specific microsatellites.

Authors:  L Gusmão; P Sánchez-Diz; F Calafell; P Martín; C A Alonso; F Alvarez-Fernández; C Alves; L Borjas-Fajardo; W R Bozzo; M L Bravo; J J Builes; J Capilla; M Carvalho; C Castillo; C I Catanesi; D Corach; A M Di Lonardo; R Espinheira; E Fagundes de Carvalho; M J Farfán; H P Figueiredo; I Gomes; M M Lojo; M Marino; M F Pinheiro; M L Pontes; V Prieto; E Ramos-Luis; J A Riancho; A C Souza Góes; O A Santapa; D R Sumita; G Vallejo; L Vidal Rioja; M C Vide; C I Vieira da Silva; M R Whittle; W Zabala; M T Zarrabeitia; A Alonso; A Carracedo; A Amorim
Journal:  Hum Mutat       Date:  2005-12       Impact factor: 4.878

9.  Non-Darwinian estimation: my ancestors, my genes' ancestors.

Authors:  Kenneth M Weiss; Jeffrey C Long
Journal:  Genome Res       Date:  2009-05       Impact factor: 9.043

10.  Association of Y chromosome haplogroup I with HIV progression, and HAART outcome.

Authors:  Efe Sezgin; Joanne M Lind; Sadeep Shrestha; Sher Hendrickson; James J Goedert; Sharyne Donfield; Gregory D Kirk; John P Phair; Jennifer L Troyer; Stephen J O'Brien; Michael W Smith
Journal:  Hum Genet       Date:  2009-01-24       Impact factor: 4.132

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  18 in total

1.  Diverse approaches to analysing the history of human and pathogen evolution: how to tell the story of the past 70 000 years.

Authors:  D M Altmann; F Balloux; R J Boyton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-03-19       Impact factor: 6.237

2.  High Y-chromosomal diversity and low relatedness between paternal lineages on a communal scale in the Western European Low Countries during the surname establishment.

Authors:  M H D Larmuseau; N Boon; N Vanderheyden; A Van Geystelen; H F M Larmuseau; K Matthys; W De Clercq; R Decorte
Journal:  Heredity (Edinb)       Date:  2015-04-15       Impact factor: 3.821

3.  A manifesto for palaeodemography in the twenty-first century.

Authors:  Jennifer C French; Philip Riris; Javier Fernandéz-López de Pablo; Sergi Lozano; Fabio Silva
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-11-30       Impact factor: 6.237

Review 4.  The Y chromosome as the most popular marker in genetic genealogy benefits interdisciplinary research.

Authors:  Francesc Calafell; Maarten H D Larmuseau
Journal:  Hum Genet       Date:  2016-11-05       Impact factor: 4.132

Review 5.  Demographic events and evolutionary forces shaping European genetic diversity.

Authors:  Krishna R Veeramah; John Novembre
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-07-24       Impact factor: 10.005

6.  Long-distance dispersal suppresses introgression of local alleles during range expansions.

Authors:  C E G Amorim; T Hofer; N Ray; M Foll; A Ruiz-Linares; L Excoffier
Journal:  Heredity (Edinb)       Date:  2016-08-31       Impact factor: 3.821

7.  The 'extremely ancient' chromosome that isn't: a forensic bioinformatic investigation of Albert Perry's X-degenerate portion of the Y chromosome.

Authors:  Eran Elhaik; Tatiana V Tatarinova; Anatole A Klyosov; Dan Graur
Journal:  Eur J Hum Genet       Date:  2014-01-22       Impact factor: 4.246

8.  Incorporating non-equilibrium dynamics into demographic history inferences of a migratory marine species.

Authors:  E L Carroll; R Alderman; J L Bannister; M Bérubé; P B Best; L Boren; C S Baker; R Constantine; K Findlay; R Harcourt; L Lemaire; P J Palsbøll; N J Patenaude; V J Rowntree; J Seger; D Steel; L O Valenzuela; M Watson; O E Gaggiotti
Journal:  Heredity (Edinb)       Date:  2018-05-03       Impact factor: 3.821

9.  Revisiting the male genetic landscape of China: a multi-center study of almost 38,000 Y-STR haplotypes.

Authors:  Michael Nothnagel; Guangyao Fan; Fei Guo; Yongfeng He; Yiping Hou; Shengping Hu; Jiang Huang; Xianhua Jiang; Wook Kim; Kicheol Kim; Chengtao Li; Hui Li; Liming Li; Shilin Li; Zhao Li; Weibo Liang; Chao Liu; Di Lu; Haibo Luo; Shengjie Nie; Meisen Shi; Hongyu Sun; Jianpin Tang; Lei Wang; Chuan-Chao Wang; Dan Wang; Shao-Qing Wen; Hongyan Wu; Weiwei Wu; Jiaxin Xing; Jiangwei Yan; Shi Yan; Hongbing Yao; Yi Ye; Libing Yun; Zhaoshu Zeng; Lagabaiyila Zha; Suhua Zhang; Xiufen Zheng; Sascha Willuweit; Lutz Roewer
Journal:  Hum Genet       Date:  2017-01-30       Impact factor: 4.132

10.  Traces of medieval migrations in a socially stratified population from Northern Italy. Evidence from uniparental markers and deep-rooted pedigrees.

Authors:  A Boattini; S Sarno; P Pedrini; C Medoro; M Carta; S Tucci; G Ferri; M Alù; D Luiselli; D Pettener
Journal:  Heredity (Edinb)       Date:  2014-09-10       Impact factor: 3.821

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