Literature DB >> 19411595

Non-Darwinian estimation: my ancestors, my genes' ancestors.

Kenneth M Weiss1, Jeffrey C Long.   

Abstract

There is widespread interest in characterizing the organization of human genetic variation around the world from a population perspective. Related to this are attempts to describe the pattern of genetic variation in the human species generally, including "recreational" genomics, the genome-based estimation of the ancestry of individuals. These approaches rest on subtle concepts of variation, time, and ancestry that are perhaps not widely appreciated. They share the idea that there are, or were, discrete panmictic human populations such that every person is either a member of such a population or is an admixed descendant of them. Ancestry fraction estimation is biased by assumptions about past and present human population structure, as when we trace ancestry to hypothetical unmixed ancestral populations, or assign an individual's ancestry to continental populations that are indistinguishable from classical "races." Attempts to identify even individuals' local subpopulations are less precise than most (geneticists included) expect, because that is usually based on a small portion of a person's ancestry, relative to the much larger pool of comparably related ancestors. It is easier to show that two people have some relationship than to show who or where the actual ancestor was. There is an important distinction between individuals' demographic ancestry and the ancestry of their genes. Despite superficial appearances, these interpretations of genetic data are often based on typological rather than Darwinian thinking, raising important issues about the questions that are actually being asked.

Entities:  

Mesh:

Year:  2009        PMID: 19411595      PMCID: PMC3647532          DOI: 10.1101/gr.076539.108

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  37 in total

1.  Inference of population structure using multilocus genotype data.

Authors:  J K Pritchard; M Stephens; P Donnelly
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

2.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.

Authors:  Daniel Falush; Matthew Stephens; Jonathan K Pritchard
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

Review 3.  Prospects for admixture mapping of complex traits.

Authors:  Paul M McKeigue
Journal:  Am J Hum Genet       Date:  2004-11-11       Impact factor: 11.025

4.  Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa.

Authors:  Sohini Ramachandran; Omkar Deshpande; Charles C Roseman; Noah A Rosenberg; Marcus W Feldman; L Luca Cavalli-Sforza
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-21       Impact factor: 11.205

5.  A classical likelihood based approach for admixture mapping using EM algorithm.

Authors:  Xiaofeng Zhu; Shuanglin Zhang; Hua Tang; Richard Cooper
Journal:  Hum Genet       Date:  2006-08-05       Impact factor: 4.132

6.  Genetic similarities within and between human populations.

Authors:  D J Witherspoon; S Wooding; A R Rogers; E E Marchani; W S Watkins; M A Batzer; L B Jorde
Journal:  Genetics       Date:  2007-03-04       Impact factor: 4.562

7.  The global pattern of gene identity variation reveals a history of long-range migrations, bottlenecks, and local mate exchange: implications for biological race.

Authors:  Keith L Hunley; Meghan E Healy; Jeffrey C Long
Journal:  Am J Phys Anthropol       Date:  2009-05       Impact factor: 2.868

8.  METHODS OF RACIAL ANALYSIS.

Authors:  E A Hooton
Journal:  Science       Date:  1926-01-22       Impact factor: 47.728

9.  Interpreting principal component analyses of spatial population genetic variation.

Authors:  John Novembre; Matthew Stephens
Journal:  Nat Genet       Date:  2008-04-20       Impact factor: 38.330

10.  Large-scale SNP analysis reveals clustered and continuous patterns of human genetic variation.

Authors:  Mark D Shriver; Rui Mei; Esteban J Parra; Vibhor Sonpar; Indrani Halder; Sarah A Tishkoff; Theodore G Schurr; Sergev I Zhadanov; Ludmila P Osipova; Tom D Brutsaert; Jonathan Friedlaender; Lynn B Jorde; W Scott Watkins; Michael J Bamshad; Gerardo Gutierrez; Halina Loi; Hajime Matsuzaki; Rick A Kittles; George Argyropoulos; Jose R Fernandez; Joshua M Akey; Keith W Jones
Journal:  Hum Genomics       Date:  2005-06       Impact factor: 4.639

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  28 in total

Review 1.  Genetic structure in African populations: implications for human demographic history.

Authors:  C A Lambert; S A Tishkoff
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2010-05-07

2.  Shared and unique components of human population structure and genome-wide signals of positive selection in South Asia.

Authors:  Mait Metspalu; Irene Gallego Romero; Bayazit Yunusbayev; Gyaneshwer Chaubey; Chandana Basu Mallick; Georgi Hudjashov; Mari Nelis; Reedik Mägi; Ene Metspalu; Maido Remm; Ramasamy Pitchappan; Lalji Singh; Kumarasamy Thangaraj; Richard Villems; Toomas Kivisild
Journal:  Am J Hum Genet       Date:  2011-12-09       Impact factor: 11.025

Review 3.  The impact of recent events on human genetic diversity.

Authors:  Mark A Jobling
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-03-19       Impact factor: 6.237

4.  Population structure with localized haplotype clusters.

Authors:  Sharon R Browning; Bruce S Weir
Journal:  Genetics       Date:  2010-05-10       Impact factor: 4.562

5.  Inferring genetic ancestry: opportunities, challenges, and implications.

Authors:  Charmaine D Royal; John Novembre; Stephanie M Fullerton; David B Goldstein; Jeffrey C Long; Michael J Bamshad; Andrew G Clark
Journal:  Am J Hum Genet       Date:  2010-05-14       Impact factor: 11.025

6.  The genome-wide structure of the Jewish people.

Authors:  Doron M Behar; Bayazit Yunusbayev; Mait Metspalu; Ene Metspalu; Saharon Rosset; Jüri Parik; Siiri Rootsi; Gyaneshwer Chaubey; Ildus Kutuev; Guennady Yudkovsky; Elza K Khusnutdinova; Oleg Balanovsky; Ornella Semino; Luisa Pereira; David Comas; David Gurwitz; Batsheva Bonne-Tamir; Tudor Parfitt; Michael F Hammer; Karl Skorecki; Richard Villems
Journal:  Nature       Date:  2010-06-09       Impact factor: 49.962

7.  Signatures of founder effects, admixture, and selection in the Ashkenazi Jewish population.

Authors:  Steven M Bray; Jennifer G Mulle; Anne F Dodd; Ann E Pulver; Stephen Wooding; Stephen T Warren
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-26       Impact factor: 11.205

8.  Population genetic structure in Indian Austroasiatic speakers: the role of landscape barriers and sex-specific admixture.

Authors:  Gyaneshwer Chaubey; Mait Metspalu; Ying Choi; Reedik Mägi; Irene Gallego Romero; Pedro Soares; Mannis van Oven; Doron M Behar; Siiri Rootsi; Georgi Hudjashov; Chandana Basu Mallick; Monika Karmin; Mari Nelis; Jüri Parik; Alla Goverdhana Reddy; Ene Metspalu; George van Driem; Yali Xue; Chris Tyler-Smith; Kumarasamy Thangaraj; Lalji Singh; Maido Remm; Martin B Richards; Marta Mirazon Lahr; Manfred Kayser; Richard Villems; Toomas Kivisild
Journal:  Mol Biol Evol       Date:  2010-10-26       Impact factor: 16.240

9.  Attitudes on DNA ancestry tests.

Authors:  Jennifer K Wagner; Kenneth M Weiss
Journal:  Hum Genet       Date:  2011-06-23       Impact factor: 4.132

10.  The missing link of Jewish European ancestry: contrasting the Rhineland and the Khazarian hypotheses.

Authors:  Eran Elhaik
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

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