Literature DB >> 14691732

The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time.

Lev A Zhivotovsky1, Peter A Underhill, Cengiz Cinnioğlu, Manfred Kayser, Bharti Morar, Toomas Kivisild, Rosaria Scozzari, Fulvio Cruciani, Giovanni Destro-Bisol, Gabriella Spedini, Geoffrey K Chambers, Rene J Herrera, Kiau Kiun Yong, David Gresham, Ivailo Tournev, Marcus W Feldman, Luba Kalaydjieva.   

Abstract

We estimate an effective mutation rate at an average Y chromosome short-tandem repeat locus as 6.9x10-4 per 25 years, with a standard deviation across loci of 5.7x10-4, using data on microsatellite variation within Y chromosome haplogroups defined by unique-event polymorphisms in populations with documented short-term histories, as well as comparative data on worldwide populations at both the Y chromosome and various autosomal loci. This value is used to estimate the times of the African Bantu expansion, the divergence of Polynesian populations (the Maoris, Cook Islanders, and Samoans), and the origin of Gypsy populations from Bulgaria.

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Year:  2003        PMID： 14691732      PMCID： PMC1181912          DOI： 10.1086/380911

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN： 0002-9297            Impact factor:   11.025


  49 in total

1.  Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome, as revealed by direct observation in father/son pairs.

Authors:  M Kayser; L Roewer; M Hedman; L Henke; J Henke; S Brauer; C Krüger; M Krawczak; M Nagy; T Dobosz; R Szibor; P de Knijff; M Stoneking; A Sajantila
Journal:  Am J Hum Genet       Date:  2000-04-06       Impact factor: 11.025

2.  Hierarchical patterns of global human Y-chromosome diversity.

Authors:  M F Hammer; T M Karafet; A J Redd; H Jarjanazi; S Santachiara-Benerecetti; H Soodyall; S L Zegura
Journal:  Mol Biol Evol       Date:  2001-07       Impact factor: 16.240

3.  Estimating divergence time with the use of microsatellite genetic distances: impacts of population growth and gene flow.

Authors:  L A Zhivotovsky
Journal:  Mol Biol Evol       Date:  2001-05       Impact factor: 16.240

4.  Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat.

Authors:  B Brinkmann; M Klintschar; F Neuhuber; J Hühne; B Rolf
Journal:  Am J Hum Genet       Date:  1998-06       Impact factor: 11.025

5.  Characterization of ancestral and derived Y-chromosome haplotypes of New World native populations.

Authors:  N O Bianchi; C I Catanesi; G Bailliet; V L Martinez-Marignac; C M Bravi; L B Vidal-Rioja; R J Herrera; J S López-Camelo
Journal:  Am J Hum Genet       Date:  1998-12       Impact factor: 11.025

6.  European Y-chromosomal lineages in Polynesians: a contrast to the population structure revealed by mtDNA.

Authors:  M E Hurles; C Irven; J Nicholson; P G Taylor; F R Santos; J Loughlin; M A Jobling; B C Sykes
Journal:  Am J Hum Genet       Date:  1998-12       Impact factor: 11.025

7.  Origins of Old Testament priests.

Authors:  M G Thomas; K Skorecki; H Ben-Ami; T Parfitt; N Bradman; D B Goldstein
Journal:  Nature       Date:  1998-07-09       Impact factor: 49.962

8.  Evaluation of Y-chromosomal STRs: a multicenter study.

Authors:  M Kayser; A Caglià; D Corach; N Fretwell; C Gehrig; G Graziosi; F Heidorn; S Herrmann; B Herzog; M Hidding; K Honda; M Jobling; M Krawczak; K Leim; S Meuser; E Meyer; W Oesterreich; A Pandya; W Parson; G Penacino; A Perez-Lezaun; A Piccinini; M Prinz; C Schmitt; L Roewer
Journal:  Int J Legal Med       Date:  1997       Impact factor: 2.686

9.  The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations.

Authors:  P A Underhill; G Passarino; A A Lin; P Shen; M Mirazón Lahr; R A Foley; P J Oefner; L L Cavalli-Sforza
Journal:  Ann Hum Genet       Date:  2001-01       Impact factor: 1.670

10.  Phylogenetic resolution of complex mutational features at Y-STR DYS390 in aboriginal Australians and Papuans.

Authors:  P Forster; M Kayser; E Meyer; L Roewer; H Pfeiffer; H Benkmann; B Brinkmann
Journal:  Mol Biol Evol       Date:  1998-09       Impact factor: 16.240
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  163 in total

1.  Genetic polymorphisms of 17 short tandem repeat loci on Y chromosome in central Croatian population.

Authors:  Branka Gršković; Gordan Mršić; Ozren Polašek; Andro Vrdoljak; Siniša Merkaš; Simun Anđelinović
Journal:  Forensic Sci Med Pathol       Date:  2011-01-30       Impact factor: 2.007

2.  Phylogeography of Y-chromosome haplogroup I reveals distinct domains of prehistoric gene flow in europe.

Authors:  Siiri Rootsi; Chiara Magri; Toomas Kivisild; Giorgia Benuzzi; Hela Help; Marina Bermisheva; Ildus Kutuev; Lovorka Barać; Marijana Pericić; Oleg Balanovsky; Andrey Pshenichnov; Daniel Dion; Monica Grobei; Lev A Zhivotovsky; Vincenza Battaglia; Alessandro Achilli; Nadia Al-Zahery; Jüri Parik; Roy King; Cengiz Cinnioğlu; Elsa Khusnutdinova; Pavao Rudan; Elena Balanovska; Wolfgang Scheffrahn; Maya Simonescu; Antonio Brehm; Rita Goncalves; Alexandra Rosa; Jean-Paul Moisan; Andre Chaventre; Vladimir Ferak; Sandor Füredi; Peter J Oefner; Peidong Shen; Lars Beckman; Ilia Mikerezi; Rifet Terzić; Dragan Primorac; Anne Cambon-Thomsen; Astrida Krumina; Antonio Torroni; Peter A Underhill; A Silvana Santachiara-Benerecetti; Richard Villems; Ornella Semino
Journal:  Am J Hum Genet       Date:  2004-05-25       Impact factor: 11.025

3.  A predominantly neolithic origin for Y-chromosomal DNA variation in North Africa.

Authors:  Barbara Arredi; Estella S Poloni; Silvia Paracchini; Tatiana Zerjal; Dahmani M Fathallah; Mohamed Makrelouf; Vincenzo L Pascali; Andrea Novelletto; Chris Tyler-Smith
Journal:  Am J Hum Genet       Date:  2004-06-16       Impact factor: 11.025

4.  Y chromosomal haplogroup J as a signature of the post-neolithic colonization of Europe.

Authors:  F Di Giacomo; F Luca; L O Popa; N Akar; N Anagnou; J Banyko; R Brdicka; G Barbujani; F Papola; G Ciavarella; F Cucci; L Di Stasi; L Gavrila; M G Kerimova; D Kovatchev; A I Kozlov; A Loutradis; V Mandarino; C Mammi'; E N Michalodimitrakis; G Paoli; K I Pappa; G Pedicini; L Terrenato; S Tofanelli; P Malaspina; A Novelletto
Journal:  Hum Genet       Date:  2004-08-21       Impact factor: 4.132

5.  Origin, diffusion, and differentiation of Y-chromosome haplogroups E and J: inferences on the neolithization of Europe and later migratory events in the Mediterranean area.

Authors:  Ornella Semino; Chiara Magri; Giorgia Benuzzi; Alice A Lin; Nadia Al-Zahery; Vincenza Battaglia; Liliana Maccioni; Costas Triantaphyllidis; Peidong Shen; Peter J Oefner; Lev A Zhivotovsky; Roy King; Antonio Torroni; L Luca Cavalli-Sforza; Peter A Underhill; A Silvana Santachiara-Benerecetti
Journal:  Am J Hum Genet       Date:  2004-04-06       Impact factor: 11.025

6.  Neolithic patrilineal signals indicate that the Armenian plateau was repopulated by agriculturalists.

Authors:  Kristian J Herrera; Robert K Lowery; Laura Hadden; Silvia Calderon; Carolina Chiou; Levon Yepiskoposyan; Maria Regueiro; Peter A Underhill; Rene J Herrera
Journal:  Eur J Hum Genet       Date:  2011-11-16       Impact factor: 4.246

Review 7.  The impact of recent events on human genetic diversity.

Authors:  Mark A Jobling
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-03-19       Impact factor: 6.237

8.  Mitochondrial DNA and Y chromosome variation provides evidence for a recent common ancestry between Native Americans and Indigenous Altaians.

Authors:  Matthew C Dulik; Sergey I Zhadanov; Ludmila P Osipova; Ayken Askapuli; Lydia Gau; Omer Gokcumen; Samara Rubinstein; Theodore G Schurr
Journal:  Am J Hum Genet       Date:  2012-01-25       Impact factor: 11.025

9.  Forensic and phylogeographic characterisation of mtDNA lineages from Somalia.

Authors:  Martin Mikkelsen; Liane Fendt; Alexander W Röck; Bettina Zimmermann; Eszter Rockenbauer; Anders J Hansen; Walther Parson; Niels Morling
Journal:  Int J Legal Med       Date:  2012-04-14       Impact factor: 2.686

10.  Afghanistan from a Y-chromosome perspective.

Authors:  Harlette Lacau; Tenzin Gayden; Maria Regueiro; Shilpa Chennakrishnaiah; Areej Bukhari; Peter A Underhill; Ralph L Garcia-Bertrand; Rene J Herrera
Journal:  Eur J Hum Genet       Date:  2012-04-18       Impact factor: 4.246
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