Literature DB >> 25693126

Structural basis of transcription initiation by RNA polymerase II.

Sarah Sainsbury1, Carrie Bernecky1, Patrick Cramer2.   

Abstract

Transcription of eukaryotic protein-coding genes commences with the assembly of a conserved initiation complex, which consists of RNA polymerase II (Pol II) and the general transcription factors, at promoter DNA. After two decades of research, the structural basis of transcription initiation is emerging. Crystal structures of many components of the initiation complex have been resolved, and structural information on Pol II complexes with general transcription factors has recently been obtained. Although mechanistic details await elucidation, available data outline how Pol II cooperates with the general transcription factors to bind to and open promoter DNA, and how Pol II directs RNA synthesis and escapes from the promoter.

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Year:  2015        PMID: 25693126     DOI: 10.1038/nrm3952

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  247 in total

1.  Regulation of CDK7 substrate specificity by MAT1 and TFIIH.

Authors:  K Y Yankulov; D L Bentley
Journal:  EMBO J       Date:  1997-04-01       Impact factor: 11.598

2.  TFIIH contains a PH domain involved in DNA nucleotide excision repair.

Authors:  Virginie Gervais; Valérie Lamour; Anass Jawhari; Florent Frindel; Emeric Wasielewski; Sandy Dubaele; Jean-Marc Egly; Jean-Claude Thierry; Bruno Kieffer; Arnaud Poterszman
Journal:  Nat Struct Mol Biol       Date:  2004-06-13       Impact factor: 15.369

3.  Factors involved in specific transcription by mammalian RNA polymerase II. Identification and characterization of factor IIH.

Authors:  O Flores; H Lu; D Reinberg
Journal:  J Biol Chem       Date:  1992-02-05       Impact factor: 5.157

4.  Structures of three distinct activator-TFIID complexes.

Authors:  Wei-Li Liu; Robert A Coleman; Elizabeth Ma; Patricia Grob; Joyce L Yang; Yixi Zhang; Gina Dailey; Eva Nogales; Robert Tjian
Journal:  Genes Dev       Date:  2009-07-01       Impact factor: 11.361

5.  Cryo-EM reveals promoter DNA binding and conformational flexibility of the general transcription factor TFIID.

Authors:  Hans Elmlund; Vera Baraznenok; Tomas Linder; Zsolt Szilagyi; Reza Rofougaran; Anders Hofer; Hans Hebert; Martin Lindahl; Claes M Gustafsson
Journal:  Structure       Date:  2009-11-11       Impact factor: 5.006

6.  Factors involved in specific transcription by human RNA polymerase II: analysis by a rapid and quantitative in vitro assay.

Authors:  M Sawadogo; R G Roeder
Journal:  Proc Natl Acad Sci U S A       Date:  1985-07       Impact factor: 11.205

7.  Conserved sequence motifs in the small subunit of human general transcription factor TFIIE.

Authors:  H Sumimoto; Y Ohkuma; E Sinn; H Kato; S Shimasaki; M Horikoshi; R G Roeder
Journal:  Nature       Date:  1991-12-05       Impact factor: 49.962

8.  The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila.

Authors:  T W Burke; J T Kadonaga
Journal:  Genes Dev       Date:  1997-11-15       Impact factor: 11.361

9.  Human TAF(II)28 and TAF(II)18 interact through a histone fold encoded by atypical evolutionary conserved motifs also found in the SPT3 family.

Authors:  C Birck; O Poch; C Romier; M Ruff; G Mengus; A C Lavigne; I Davidson; D Moras
Journal:  Cell       Date:  1998-07-24       Impact factor: 41.582

10.  The ERCC2/DNA repair protein is associated with the class II BTF2/TFIIH transcription factor.

Authors:  L Schaeffer; V Moncollin; R Roy; A Staub; M Mezzina; A Sarasin; G Weeda; J H Hoeijmakers; J M Egly
Journal:  EMBO J       Date:  1994-05-15       Impact factor: 11.598

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  148 in total

1.  Constitutive turnover of histone H2A.Z at yeast promoters requires the preinitiation complex.

Authors:  Michael Tramantano; Lu Sun; Christy Au; Daniel Labuz; Zhimin Liu; Mindy Chou; Chen Shen; Ed Luk
Journal:  Elife       Date:  2016-07-20       Impact factor: 8.140

Review 2.  Histone exchange, chromatin structure and the regulation of transcription.

Authors:  Swaminathan Venkatesh; Jerry L Workman
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-04       Impact factor: 94.444

Review 3.  The RNA Polymerase II Core Promoter in Drosophila.

Authors:  Long Vo Ngoc; George A Kassavetis; James T Kadonaga
Journal:  Genetics       Date:  2019-05       Impact factor: 4.562

4.  Paused RNA polymerase II inhibits new transcriptional initiation.

Authors:  Wanqing Shao; Julia Zeitlinger
Journal:  Nat Genet       Date:  2017-05-15       Impact factor: 38.330

5.  TFIID or not TFIID, a continuing transcriptional SAGA.

Authors:  Slawomir Kubik; Maria Jessica Bruzzone; David Shore
Journal:  EMBO J       Date:  2017-01-09       Impact factor: 11.598

Review 6.  Disorders of Transcriptional Regulation: An Emerging Category of Multiple Malformation Syndromes.

Authors:  Kosuke Izumi
Journal:  Mol Syndromol       Date:  2016-09-02

7.  A Versatile Lentiviral Delivery Toolkit for Proximity-dependent Biotinylation in Diverse Cell Types.

Authors:  Payman Samavarchi-Tehrani; Hala Abdouni; Reuben Samson; Anne-Claude Gingras
Journal:  Mol Cell Proteomics       Date:  2018-07-10       Impact factor: 5.911

Review 8.  Modulation of Molecular Chaperones in Huntington's Disease and Other Polyglutamine Disorders.

Authors:  Sara D Reis; Brígida R Pinho; Jorge M A Oliveira
Journal:  Mol Neurobiol       Date:  2016-09-22       Impact factor: 5.590

Review 9.  An Epigenetic Journey: Epstein-Barr Virus Transcribes Chromatinized and Subsequently Unchromatinized Templates during Its Lytic Cycle.

Authors:  Adityarup Chakravorty; Bill Sugden; Eric C Johannsen
Journal:  J Virol       Date:  2019-04-03       Impact factor: 5.103

10.  Structural biology: Snapshots of transcription initiation.

Authors:  Steven Hahn; Stephen Buratowski
Journal:  Nature       Date:  2016-05-11       Impact factor: 49.962

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