Literature DB >> 22411836

Tfb6, a previously unidentified subunit of the general transcription factor TFIIH, facilitates dissociation of Ssl2 helicase after transcription initiation.

Kenji Murakami1, Brian J Gibbons, Ralph E Davis, Shigeki Nagai, Xin Liu, Philip J J Robinson, Tinghe Wu, Craig D Kaplan, Roger D Kornberg.   

Abstract

General transcription factor TFIIH, previously described as a 10-subunit complex, is essential for transcription and DNA repair. An eleventh subunit now identified, termed Tfb6, exhibits 45% sequence similarity to human nuclear mRNA export factor 5. Tfb6 dissociates from TFIIH as a heterodimer with the Ssl2 subunit, a DNA helicase that drives promoter melting for the initiation of transcription. Tfb6 does not, however, dissociate Ssl2 from TFIIH in the context of a fully assembled transcription preinitiation complex. Our findings suggest a dynamic state of Ssl2, allowing its engagement in multiple cellular processes.

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Year:  2012        PMID: 22411836      PMCID: PMC3323989          DOI: 10.1073/pnas.1201448109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

1.  Subunit architecture of general transcription factor TFIIH.

Authors:  Brian J Gibbons; Edward J Brignole; Maia Azubel; Kenji Murakami; Neil R Voss; David A Bushnell; Francisco J Asturias; Roger D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-20       Impact factor: 11.205

2.  Systematic bioinformatics and experimental validation of yeast complexes reduces the rate of attrition during structural investigations.

Authors:  Mark A Brooks; Kamil Gewartowski; Eirini Mitsiki; Juliette Létoquart; Roland A Pache; Ysaline Billier; Michela Bertero; Margot Corréa; Mariusz Czarnocki-Cieciura; Michal Dadlez; Véronique Henriot; Noureddine Lazar; Lila Delbos; Dorothée Lebert; Jan Piwowarski; Pascal Rochaix; Bettina Böttcher; Luis Serrano; Bertrand Séraphin; Herman van Tilbeurgh; Patrick Aloy; Anastassis Perrakis; Andrzej Dziembowski
Journal:  Structure       Date:  2010-09-08       Impact factor: 5.006

3.  Proteome survey reveals modularity of the yeast cell machinery.

Authors:  Anne-Claude Gavin; Patrick Aloy; Paola Grandi; Roland Krause; Markus Boesche; Martina Marzioch; Christina Rau; Lars Juhl Jensen; Sonja Bastuck; Birgit Dümpelfeld; Angela Edelmann; Marie-Anne Heurtier; Verena Hoffman; Christian Hoefert; Karin Klein; Manuela Hudak; Anne-Marie Michon; Malgorzata Schelder; Markus Schirle; Marita Remor; Tatjana Rudi; Sean Hooper; Andreas Bauer; Tewis Bouwmeester; Georg Casari; Gerard Drewes; Gitte Neubauer; Jens M Rick; Bernhard Kuster; Peer Bork; Robert B Russell; Giulio Superti-Furga
Journal:  Nature       Date:  2006-01-22       Impact factor: 49.962

4.  Posttranslational inhibition of Ty1 retrotransposition by nucleotide excision repair/transcription factor TFIIH subunits Ssl2p and Rad3p.

Authors:  B S Lee; C P Lichtenstein; B Faiola; L A Rinckel; W Wysock; M J Curcio; D J Garfinkel
Journal:  Genetics       Date:  1998-04       Impact factor: 4.562

5.  Participation of XPB/Ptr8p, a component of TFIIH, in nucleocytoplasmic transport of mRNA in fission yeast.

Authors:  Fumitaka Mizuki; Takeshi Namiki; Hiroshi Sato; Hiromi Furukawa; Tadao Matsusaka; Yasumi Ohshima; Ryoko Ishibashi; Tomoko Andoh; Tokio Tani
Journal:  Genes Cells       Date:  2007-01       Impact factor: 1.891

6.  Subunits of yeast RNA polymerase II transcription factor TFIIH encoded by the CCL1 gene.

Authors:  J Q Svejstrup; W J Feaver; R D Kornberg
Journal:  J Biol Chem       Date:  1996-01-12       Impact factor: 5.157

7.  The MO15 cell cycle kinase is associated with the TFIIH transcription-DNA repair factor.

Authors:  R Roy; J P Adamczewski; T Seroz; W Vermeulen; J P Tassan; L Schaeffer; E A Nigg; J H Hoeijmakers; J M Egly
Journal:  Cell       Date:  1994-12-16       Impact factor: 41.582

8.  RNA polymerase transcription factor IIH holoenzyme from yeast.

Authors:  J Q Svejstrup; W J Feaver; J LaPointe; R D Kornberg
Journal:  J Biol Chem       Date:  1994-11-11       Impact factor: 5.157

9.  Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism.

Authors:  Xin Liu; David A Bushnell; Dong Wang; Guillermo Calero; Roger D Kornberg
Journal:  Science       Date:  2009-11-12       Impact factor: 47.728

10.  Different forms of TFIIH for transcription and DNA repair: holo-TFIIH and a nucleotide excision repairosome.

Authors:  J Q Svejstrup; Z Wang; W J Feaver; X Wu; D A Bushnell; T F Donahue; E C Friedberg; R D Kornberg
Journal:  Cell       Date:  1995-01-13       Impact factor: 41.582

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  18 in total

1.  Def1 interacts with TFIIH and modulates RNA polymerase II transcription.

Authors:  Nivedita Damodaren; Trevor Van Eeuwen; Joanna Zamel; Enrique Lin-Shiao; Nir Kalisman; Kenji Murakami
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-27       Impact factor: 11.205

Review 2.  Structural basis of transcription initiation by RNA polymerase II.

Authors:  Sarah Sainsbury; Carrie Bernecky; Patrick Cramer
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-18       Impact factor: 94.444

3.  Formation and fate of a complete 31-protein RNA polymerase II transcription preinitiation complex.

Authors:  Kenji Murakami; Guillermo Calero; Christopher R Brown; Xin Liu; Ralph E Davis; Hinrich Boeger; Roger D Kornberg
Journal:  J Biol Chem       Date:  2013-01-09       Impact factor: 5.157

4.  Transcription factors TFIIF and TFIIS promote transcript elongation by RNA polymerase II by synergistic and independent mechanisms.

Authors:  Volker Schweikhard; Cong Meng; Kenji Murakami; Craig D Kaplan; Roger D Kornberg; Steven M Block
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-14       Impact factor: 11.205

5.  Function of Conserved Topological Regions within the Saccharomyces cerevisiae Basal Transcription Factor TFIIH.

Authors:  Linda Warfield; Jie Luo; Jeffrey Ranish; Steven Hahn
Journal:  Mol Cell Biol       Date:  2016-09-12       Impact factor: 4.272

6.  Uncoupling Promoter Opening from Start-Site Scanning.

Authors:  Kenji Murakami; Pierre-Jean Mattei; Ralph E Davis; Huiyan Jin; Craig D Kaplan; Roger D Kornberg
Journal:  Mol Cell       Date:  2015-06-11       Impact factor: 17.970

7.  Architecture of an RNA polymerase II transcription pre-initiation complex.

Authors:  Kenji Murakami; Hans Elmlund; Nir Kalisman; David A Bushnell; Christopher M Adams; Maia Azubel; Dominika Elmlund; Yael Levi-Kalisman; Xin Liu; Brian J Gibbons; Michael Levitt; Roger D Kornberg
Journal:  Science       Date:  2013-09-26       Impact factor: 47.728

8.  In vitro reconstitution of yeast RNA polymerase II transcription initiation with high efficiency.

Authors:  Rina Fujiwara; Kenji Murakami
Journal:  Methods       Date:  2019-03-21       Impact factor: 3.608

9.  Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex.

Authors:  Philip J Robinson; Michael J Trnka; David A Bushnell; Ralph E Davis; Pierre-Jean Mattei; Alma L Burlingame; Roger D Kornberg
Journal:  Cell       Date:  2016-09-08       Impact factor: 41.582

10.  Physical and functional interactions between Drosophila homologue of Swc6/p18Hamlet subunit of the SWR1/SRCAP chromatin-remodeling complex with the DNA repair/transcription factor TFIIH.

Authors:  Mariana Herrera-Cruz; Grisel Cruz; Viviana Valadez-Graham; Mariana Fregoso-Lomas; Claudia Villicaña; Martha Vázquez; Enrique Reynaud; Mario Zurita
Journal:  J Biol Chem       Date:  2012-08-03       Impact factor: 5.157

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