Literature DB >> 22307279

Modulation of function in a minimalist heme-binding membrane protein.

Sandip Shinde1, Jeanine M Cordova, Brian W Woodrum, Giovanna Ghirlanda.   

Abstract

De novo designed heme-binding proteins have been used successfully to recapitulate features of natural hemoproteins. This approach has now been extended to membrane-soluble model proteins. Our group designed a functional hemoprotein, ME1, by engineering a bishistidine binding site into a natural membrane protein, glycophorin A (Cordova et al. in J Am Chem Soc 129:512-518, 2007). ME1 binds iron(III) protoporphyrin IX with submicromolar affinity, has a redox potential of -128 mV, and displays peroxidase activity. Here, we show the effect of aromatic residues in modulating the redox potential in the context of a membrane-soluble model system. We designed aromatic interactions with the heme through a single-point mutant, G25F, in which a phenylalanine is designed to dock against the porphyrin ring. This mutation results in roughly tenfold tighter binding to iron(III) protoporphyrin IX (K(d,app) = 6.5 × 10(-8) M), and lowers the redox potential of the cofactor to -172 mV. This work demonstrates that specific design features aimed at controlling the properties of bound cofactors can be introduced in a minimalist membrane hemoprotein model. The ability to modulate the redox potential of cofactors embedded in artificial membrane proteins is crucial for the design of electron transfer chains across membranes in functional photosynthetic devices. © SBIC 2012

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Year:  2012        PMID: 22307279     DOI: 10.1007/s00775-012-0876-1

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  50 in total

1.  Hydrophobic interactions in metalloporphyrin-peptide complexes.

Authors:  D L Huffman; K S Suslick
Journal:  Inorg Chem       Date:  2000-11-27       Impact factor: 5.165

2.  Engineering redox functions in a nucleic acid binding protein.

Authors:  Jon R Wilson; Daren J Caruana; Gianfranco Gilardi
Journal:  Chem Commun (Camb)       Date:  2003-02-07       Impact factor: 6.222

Review 3.  How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homo-oligomeric helical bundles.

Authors:  William F DeGrado; Holly Gratkowski; James D Lear
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

4.  Effect of redox potential of the heme on the peroxidase activity of cytochrome b562.

Authors:  Shyamalava Mazumdar; Stacy L Springs; George L McLendon
Journal:  Biophys Chem       Date:  2003-09       Impact factor: 2.352

Review 5.  Design of membrane proteins: toward functional systems.

Authors:  Giovanna Ghirlanda
Journal:  Curr Opin Chem Biol       Date:  2009-10-14       Impact factor: 8.822

6.  Heme redox potential control in de novo designed four-alpha-helix bundle proteins.

Authors:  J M Shifman; B R Gibney; R E Sharp; P L Dutton
Journal:  Biochemistry       Date:  2000-12-05       Impact factor: 3.162

7.  Hydrophobic modulation of heme properties in heme protein maquettes.

Authors:  B R Gibney; S S Huang; J J Skalicky; E J Fuentes; A J Wand; P L Dutton
Journal:  Biochemistry       Date:  2001-09-04       Impact factor: 3.162

8.  De novo design and molecular assembly of a transmembrane diporphyrin-binding protein complex.

Authors:  Ivan V Korendovych; Alessandro Senes; Yong Ho Kim; James D Lear; H Christopher Fry; Michael J Therien; J Kent Blasie; F Ann Walker; William F Degrado
Journal:  J Am Chem Soc       Date:  2010-11-10       Impact factor: 15.419

9.  De novo designed cyclic-peptide heme complexes.

Authors:  Michael M Rosenblatt; Jiangyun Wang; Kenneth S Suslick
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-31       Impact factor: 11.205

10.  High-resolution crystal structures and spectroscopy of native and compound I cytochrome c peroxidase.

Authors:  Christopher A Bonagura; B Bhaskar; Hideaki Shimizu; Huiying Li; M Sundaramoorthy; Duncan E McRee; David B Goodin; Thomas L Poulos
Journal:  Biochemistry       Date:  2003-05-20       Impact factor: 3.162

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  7 in total

Review 1.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

Review 2.  Design and fine-tuning redox potentials of metalloproteins involved in electron transfer in bioenergetics.

Authors:  Parisa Hosseinzadeh; Yi Lu
Journal:  Biochim Biophys Acta       Date:  2015-08-21

3.  First principles design of a core bioenergetic transmembrane electron-transfer protein.

Authors:  Geetha Goparaju; Bryan A Fry; Sarah E Chobot; Gregory Wiedman; Christopher C Moser; P Leslie Dutton; Bohdana M Discher
Journal:  Biochim Biophys Acta       Date:  2015-12-07

4.  Designed multi-stranded heme binding β-sheet peptides in membrane.

Authors:  Areetha D'Souza; Mukesh Mahajan; Surajit Bhattacharjya
Journal:  Chem Sci       Date:  2016-12-17       Impact factor: 9.825

5.  Crystal structure of two anti-porphyrin antibodies with peroxidase activity.

Authors:  Victor Muñoz Robles; Jean-Didier Maréchal; Amel Bahloul; Marie-Agnès Sari; Jean-Pierre Mahy; Béatrice Golinelli-Pimpaneau
Journal:  PLoS One       Date:  2012-12-11       Impact factor: 3.240

6.  The de novo design of a biocompatible and functional integral membrane protein using minimal sequence complexity.

Authors:  Christophe J Lalaurie; Virginie Dufour; Anna Meletiou; Sarah Ratcliffe; Abigail Harland; Olivia Wilson; Chiratchaya Vamasiri; Deborah K Shoemark; Christopher Williams; Christopher J Arthur; Richard B Sessions; Matthew P Crump; J L Ross Anderson; Paul Curnow
Journal:  Sci Rep       Date:  2018-10-01       Impact factor: 4.379

Review 7.  Designing minimalist membrane proteins.

Authors:  Paul Curnow
Journal:  Biochem Soc Trans       Date:  2019-10-31       Impact factor: 5.407

  7 in total

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