Literature DB >> 26672896

First principles design of a core bioenergetic transmembrane electron-transfer protein.

Geetha Goparaju1, Bryan A Fry1, Sarah E Chobot1, Gregory Wiedman1, Christopher C Moser1, P Leslie Dutton1, Bohdana M Discher2.   

Abstract

Here we describe the design, Escherichia coli expression and characterization of a simplified, adaptable and functionally transparent single chain 4-α-helix transmembrane protein frame that binds multiple heme and light activatable porphyrins. Such man-made cofactor-binding oxidoreductases, designed from first principles with minimal reference to natural protein sequences, are known as maquettes. This design is an adaptable frame aiming to uncover core engineering principles governing bioenergetic transmembrane electron-transfer function and recapitulate protein archetypes proposed to represent the origins of photosynthesis. This article is part of a Special Issue entitled Biodesign for Bioenergetics--the design and engineering of electronic transfer cofactors, proteins and protein networks, edited by Ronald L. Koder and J.L. Ross Anderson.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Evolution; Intraprotein electron transfer; Light-activation; Man-made redox proteins; Maquettes; Oxidoreductase; Photosynthesis; Protein design; Respiration; Transmembrane proteins

Mesh:

Substances:

Year:  2015        PMID: 26672896      PMCID: PMC4846532          DOI: 10.1016/j.bbabio.2015.12.002

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  49 in total

1.  Enzyme-free cloning: a rapid method to clone PCR products independent of vector restriction enzyme sites.

Authors:  D Tillett; B A Neilan
Journal:  Nucleic Acids Res       Date:  1999-10-01       Impact factor: 16.971

2.  Binding-induced alterations in ultraviolet absorption of native serum albumin.

Authors:  H Polet; J Steinhardt
Journal:  Biochemistry       Date:  1968-04       Impact factor: 3.162

3.  31P NMR study of improvement in oxidative phosphorylation by vitamins K3 and C in a patient with a defect in electron transport at complex III in skeletal muscle.

Authors:  S Eleff; N G Kennaway; N R Buist; V M Darley-Usmar; R A Capaldi; W J Bank; B Chance
Journal:  Proc Natl Acad Sci U S A       Date:  1984-06       Impact factor: 11.205

4.  Computational de novo design and characterization of a four-helix bundle protein that selectively binds a nonbiological cofactor.

Authors:  Frank V Cochran; Sophia P Wu; Wei Wang; Vikas Nanda; Jeffery G Saven; Michael J Therien; William F DeGrado
Journal:  J Am Chem Soc       Date:  2005-02-09       Impact factor: 15.419

5.  Computational design and elaboration of a de novo heterotetrameric alpha-helical protein that selectively binds an emissive abiological (porphinato)zinc chromophore.

Authors:  H Christopher Fry; Andreas Lehmann; Jeffery G Saven; William F DeGrado; Michael J Therien
Journal:  J Am Chem Soc       Date:  2010-03-24       Impact factor: 15.419

6.  De novo design and molecular assembly of a transmembrane diporphyrin-binding protein complex.

Authors:  Ivan V Korendovych; Alessandro Senes; Yong Ho Kim; James D Lear; H Christopher Fry; Michael J Therien; J Kent Blasie; F Ann Walker; William F Degrado
Journal:  J Am Chem Soc       Date:  2010-11-10       Impact factor: 15.419

7.  Quinone and non-quinone redox couples in Complex III.

Authors:  Haibo Zhang; Sarah E Chobot; Artur Osyczka; Colin A Wraight; P Leslie Dutton; Christopher C Moser
Journal:  J Bioenerg Biomembr       Date:  2008-10-31       Impact factor: 2.945

8.  Computational de novo design and characterization of a protein that selectively binds a highly hyperpolarizable abiological chromophore.

Authors:  H Christopher Fry; Andreas Lehmann; Louise E Sinks; Inge Asselberghs; Andrey Tronin; Venkata Krishnan; J Kent Blasie; Koen Clays; William F DeGrado; Jeffery G Saven; Michael J Therien
Journal:  J Am Chem Soc       Date:  2013-09-05       Impact factor: 15.419

9.  Solvation energies of amino acid side chains and backbone in a family of host-guest pentapeptides.

Authors:  W C Wimley; T P Creamer; S H White
Journal:  Biochemistry       Date:  1996-04-23       Impact factor: 3.162

10.  Design and engineering of an O(2) transport protein.

Authors:  Ronald L Koder; J L Ross Anderson; Lee A Solomon; Konda S Reddy; Christopher C Moser; P Leslie Dutton
Journal:  Nature       Date:  2009-03-19       Impact factor: 49.962

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  12 in total

1.  Multi-step excitation energy transfer engineered in genetic fusions of natural and synthetic light-harvesting proteins.

Authors:  Joshua A Mancini; Goutham Kodali; Jianbing Jiang; Kanumuri Ramesh Reddy; Jonathan S Lindsey; Donald A Bryant; P Leslie Dutton; Christopher C Moser
Journal:  J R Soc Interface       Date:  2017-02       Impact factor: 4.118

2.  De Novo Construction of Redox Active Proteins.

Authors:  C C Moser; M M Sheehan; N M Ennist; G Kodali; C Bialas; M T Englander; B M Discher; P L Dutton
Journal:  Methods Enzymol       Date:  2016-07-11       Impact factor: 1.600

Review 3.  Protein Design: From the Aspect of Water Solubility and Stability.

Authors:  Rui Qing; Shilei Hao; Eva Smorodina; David Jin; Arthur Zalevsky; Shuguang Zhang
Journal:  Chem Rev       Date:  2022-08-03       Impact factor: 72.087

4.  De novo synthetic biliprotein design, assembly and excitation energy transfer.

Authors:  Joshua A Mancini; Molly Sheehan; Goutham Kodali; Brian Y Chow; Donald A Bryant; P Leslie Dutton; Christopher C Moser
Journal:  J R Soc Interface       Date:  2018-04       Impact factor: 4.118

Review 5.  De novo protein design, a retrospective.

Authors:  Ivan V Korendovych; William F DeGrado
Journal:  Q Rev Biophys       Date:  2020-02-11       Impact factor: 5.318

6.  Engineering an Artificial Flavoprotein Magnetosensor.

Authors:  Chris Bialas; Lauren E Jarocha; Kevin B Henbest; Tilo M Zollitsch; Goutham Kodali; Christiane R Timmel; Stuart R Mackenzie; P Leslie Dutton; Christopher C Moser; P J Hore
Journal:  J Am Chem Soc       Date:  2016-12-16       Impact factor: 15.419

7.  The soluble loop BC region guides, but not dictates, the assembly of the transmembrane cytochrome b6.

Authors:  Lydia Tome-Stangl; Cornelia Schaetzel; Stefan Tenzer; Frank Bernhard; Dirk Schneider
Journal:  PLoS One       Date:  2017-12-14       Impact factor: 3.240

8.  Small-residue packing motifs modulate the structure and function of a minimal de novo membrane protein.

Authors:  Paul Curnow; Benjamin J Hardy; Virginie Dufour; Christopher J Arthur; Richard Stenner; Lorna R Hodgson; Paul Verkade; Christopher Williams; Deborah K Shoemark; Richard B Sessions; Matthew P Crump; Michael R Jones; J L Ross Anderson
Journal:  Sci Rep       Date:  2020-09-16       Impact factor: 4.379

Review 9.  The ascent of man(made oxidoreductases).

Authors:  Katie J Grayson; Jl Ross Anderson
Journal:  Curr Opin Struct Biol       Date:  2018-05-10       Impact factor: 6.809

10.  The de novo design of a biocompatible and functional integral membrane protein using minimal sequence complexity.

Authors:  Christophe J Lalaurie; Virginie Dufour; Anna Meletiou; Sarah Ratcliffe; Abigail Harland; Olivia Wilson; Chiratchaya Vamasiri; Deborah K Shoemark; Christopher Williams; Christopher J Arthur; Richard B Sessions; Matthew P Crump; J L Ross Anderson; Paul Curnow
Journal:  Sci Rep       Date:  2018-10-01       Impact factor: 4.379

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