Literature DB >> 24192373

Overexpression, crystallization and preliminary X-ray crystallographic analysis of release factor eRF1-1 from Arabidopsis thaliana.

Yan An1, Yongfeng Lou, Yingwu Xu.   

Abstract

Peptide release factor 1 (RF1) regulates the termination of translation in protein synthesis by recognizing the stop codons. The eukaryotic RF1s (eRF1s) from Arabidopsis thaliana and human have different stop-codon preferences even though they share high sequence similarity. Based on known RF1 structures, it has been suggested that the specificity depends on both the local structure and the domain arrangement, but the lack of a structure of Arabidopsis eRF1 hinders a detailed comparison. To reveal the mechanism of stop-codon recognition and compare it with that of human eRF1, one of the three Arabidopsis eRF1s, AteRF1-1, was studied and a preliminary X-ray crystallographic analysis is reported here. The protein was overexpressed in Escherichia coli and crystallized at room temperature using the vapour-diffusion method. Crystals were grown from 1.6 M lithium sulfate, 0.1 M Tris-HCl pH 8.0, 2%(v/v) PEG 400 and diffracted to 3.77 Å resolution. The data were processed in point group 622, with unit-cell parameters a = b = 136.6, c = 325.7 Å.

Entities:  

Keywords:  Arabidopsis thaliana; peptide release factor 1 (RF1)

Mesh:

Substances:

Year:  2013        PMID: 24192373      PMCID: PMC3818057          DOI: 10.1107/S1744309113027784

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  24 in total

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Authors:  C M Brown; P A Stockwell; C N Trotman; W P Tate
Journal:  Nucleic Acids Res       Date:  1990-11-11       Impact factor: 16.971

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Authors:  P H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-10-19

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Authors:  Zhihong Cheng; Kazuki Saito; Andrey V Pisarev; Miki Wada; Vera P Pisareva; Tatyana V Pestova; Michal Gajda; Adam Round; Chunguang Kong; Mengkiat Lim; Yoshikazu Nakamura; Dmitri I Svergun; Koichi Ito; Haiwei Song
Journal:  Genes Dev       Date:  2009-05-01       Impact factor: 11.361

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Authors:  D S Konecki; K C Aune; W Tate; C T Caskey
Journal:  J Biol Chem       Date:  1977-07-10       Impact factor: 5.157

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  Structural analyses of peptide release factor 1 from Thermotoga maritima reveal domain flexibility required for its interaction with the ribosome.

Authors:  Dong Hae Shin; Jeroen Brandsen; Jaru Jancarik; Hisao Yokota; Rosalind Kim; Sung-Hou Kim
Journal:  J Mol Biol       Date:  2004-07-30       Impact factor: 5.469

7.  Crystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon.

Authors:  Sabine Petry; Ditlev E Brodersen; Frank V Murphy; Christine M Dunham; Maria Selmer; Michael J Tarry; Ann C Kelley; V Ramakrishnan
Journal:  Cell       Date:  2005-12-29       Impact factor: 41.582

8.  Structural basis for translation termination by archaeal RF1 and GTP-bound EF1α complex.

Authors:  Kan Kobayashi; Kazuki Saito; Ryuichiro Ishitani; Koichi Ito; Osamu Nureki
Journal:  Nucleic Acids Res       Date:  2012-07-05       Impact factor: 16.971

9.  Termination of translation in eukaryotes is governed by two interacting polypeptide chain release factors, eRF1 and eRF3.

Authors:  G Zhouravleva; L Frolova; X Le Goff; R Le Guellec; S Inge-Vechtomov; L Kisselev; M Philippe
Journal:  EMBO J       Date:  1995-08-15       Impact factor: 11.598

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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