| Literature DB >> 22259554 |
Kazumasa Ueda, Kenta Suzuki, Kei Kunimoto, Kenji Yoza.
Abstract
The asymmetric unit of the title compound, C(9)H(4)S(7), contains two independent mol-ecules, in one of which the central five-membered ring is disordered over two orientations in a 0.924 (3):0.076 (3) ratio. The mol-ecular skeleton is almost planar: the average distance of the atoms from their mean plane is 0.128 (7) Å in the ordered mol-ecule, and 0.088 (5) and 0.123 (2) Å in the major and minor disorder components, respectively. The ordered and disordered mol-ecules form separate columns by stacking along the b axis. Adjacent columns inter-act via short S⋯S [3.33 (2), 3.434 (3), 3.444 (2), 3.503 (2), 3.519 (3) and 3.53 (4) Å] and S⋯H [2.814 (2), 2.87 (7), 2.92 (2), 2.9269 (18), 2.93 (2), 2.94 (2), 2.939 (2), 2.967 (2) and 2.974 (1) Å] contacts.Entities:
Year: 2011 PMID: 22259554 PMCID: PMC3254410 DOI: 10.1107/S1600536811051518
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H4S7 | |
| Monoclinic, | Mo |
| Cell parameters from 794 reflections | |
| θ = 2.3–23.9° | |
| µ = 1.27 mm−1 | |
| β = 108.177 (4)° | |
| Needle, black | |
| 0.09 × 0.02 × 0.02 mm |
| Bruker APEXII CCD area-detector diffractometer | 4975 independent reflections |
| Radiation source: Bruker TXS fine-focus rotating anode | 3396 reflections with |
| Bruker Helios multilayer confocal mirror | |
| Detector resolution: 8.333 pixels mm-1 | θmax = 27.5°, θmin = 1.9° |
| phi and ω scans | |
| Absorption correction: multi-scan ( | |
| 6965 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.002 | |
| 4975 reflections | Δρmax = 0.63 e Å−3 |
| 344 parameters | Δρmin = −0.52 e Å−3 |
| 421 restraints | Absolute structure: Flack (1983), 1849 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: −0.18 (18) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C4 | 0.3976 (4) | 0.7807 (19) | 0.2942 (4) | 0.0247 (17) | |
| C5 | 0.5339 (4) | 1.060 (2) | 0.3647 (4) | 0.035 (2) | |
| H5A | 0.5870 | 1.1430 | 0.3772 | 0.042* | |
| C6 | 0.4937 (4) | 1.091 (2) | 0.4121 (5) | 0.035 (2) | |
| H6A | 0.5160 | 1.1990 | 0.4604 | 0.043* | |
| C7 | 0.1148 (4) | 0.3154 (18) | 0.1591 (4) | 0.0190 (16) | |
| C8 | −0.0317 (4) | 0.151 (2) | 0.1023 (4) | 0.0244 (17) | |
| H8A | −0.0815 | 0.0767 | 0.0685 | 0.029* | |
| C9 | −0.0268 (4) | 0.277 (2) | 0.1707 (4) | 0.0251 (18) | |
| H9A | −0.0718 | 0.2915 | 0.1884 | 0.030* | |
| C10 | 0.3122 (4) | 0.6221 (18) | 0.8314 (3) | 0.0139 (14) | |
| C11 | 0.3743 (4) | 0.922 (2) | 0.9615 (4) | 0.0238 (17) | |
| H11A | 0.3839 | 1.0134 | 1.0115 | 0.029* | |
| C12 | 0.4298 (4) | 0.941 (2) | 0.9257 (4) | 0.0248 (17) | |
| H12A | 0.4792 | 1.0526 | 0.9490 | 0.030* | |
| C13 | 0.1820 (4) | 0.1225 (19) | 0.5609 (4) | 0.0154 (15) | |
| C14 | 0.1298 (4) | −0.035 (2) | 0.4192 (4) | 0.0195 (16) | |
| H14A | 0.0971 | −0.1098 | 0.3703 | 0.023* | |
| C15 | 0.2009 (4) | 0.085 (2) | 0.4285 (3) | 0.0205 (17) | |
| H15A | 0.2218 | 0.1003 | 0.3868 | 0.025* | |
| C4A | 0.3347 (6) | 0.633 (2) | 0.2437 (4) | 0.0190 (17) | 0.924 (3) |
| C5A | 0.1947 (5) | 0.384 (2) | 0.1739 (4) | 0.0155 (15) | 0.924 (3) |
| C6A | 0.2391 (6) | 0.323 (3) | 0.1228 (5) | 0.021 (2) | 0.924 (3) |
| C4B | 0.191 (4) | 0.346 (17) | 0.181 (4) | 0.018 (4) | 0.076 (3) |
| C5B | 0.335 (6) | 0.59 (2) | 0.248 (3) | 0.023 (4) | 0.076 (3) |
| C6B | 0.331 (2) | 0.485 (10) | 0.173 (3) | 0.023 (3) | 0.076 (3) |
| C4C | 0.2640 (3) | 0.4578 (17) | 0.7717 (3) | 0.0170 (15) | |
| C5C | 0.1960 (3) | 0.1937 (16) | 0.6374 (3) | 0.0151 (15) | |
| C6C | 0.1387 (3) | 0.1573 (17) | 0.6762 (3) | 0.0158 (15) | |
| S4 | 0.48789 (12) | 0.8603 (6) | 0.27620 (13) | 0.0385 (6) | |
| S5 | 0.39615 (10) | 0.9263 (6) | 0.38449 (10) | 0.0270 (5) | |
| S6 | 0.05349 (11) | 0.1230 (5) | 0.07570 (9) | 0.0211 (4) | |
| S7 | 0.06754 (10) | 0.4126 (5) | 0.22574 (9) | 0.0201 (4) | |
| S8 | 0.28575 (11) | 0.7290 (5) | 0.91400 (10) | 0.0219 (5) | |
| S9 | 0.40896 (10) | 0.7580 (5) | 0.83649 (10) | 0.0225 (5) | |
| S10 | 0.09618 (10) | −0.0554 (5) | 0.49847 (9) | 0.0189 (4) | |
| S11 | 0.25580 (10) | 0.2146 (5) | 0.51919 (9) | 0.0204 (4) | |
| S1A | 0.2450 (5) | 0.5721 (17) | 0.2628 (3) | 0.0191 (11) | 0.924 (3) |
| S2A | 0.33680 (13) | 0.4760 (6) | 0.15541 (12) | 0.0277 (6) | 0.924 (3) |
| S3A | 0.20601 (13) | 0.1459 (6) | 0.03754 (11) | 0.0275 (6) | 0.924 (3) |
| S1B | 0.246 (6) | 0.52 (2) | 0.268 (3) | 0.015 (6) | 0.076 (3) |
| S2B | 0.242 (2) | 0.312 (11) | 0.114 (2) | 0.021 (4) | 0.076 (3) |
| S3B | 0.4040 (14) | 0.512 (7) | 0.1345 (13) | 0.026 (6) | 0.076 (3) |
| S1C | 0.28927 (10) | 0.3657 (5) | 0.68923 (9) | 0.0193 (4) | |
| S2C | 0.16991 (10) | 0.3150 (5) | 0.76938 (9) | 0.0193 (4) | |
| S3C | 0.04904 (10) | −0.0125 (5) | 0.64141 (10) | 0.0211 (5) |
| C4 | 0.025 (3) | 0.021 (4) | 0.032 (4) | −0.001 (3) | 0.014 (3) | 0.000 (3) |
| C5 | 0.021 (4) | 0.028 (5) | 0.055 (5) | −0.001 (3) | 0.012 (3) | −0.006 (4) |
| C6 | 0.024 (4) | 0.028 (5) | 0.048 (4) | −0.006 (3) | 0.002 (3) | −0.004 (4) |
| C7 | 0.026 (3) | 0.013 (4) | 0.017 (3) | 0.005 (3) | 0.004 (3) | 0.000 (3) |
| C8 | 0.027 (4) | 0.018 (4) | 0.022 (3) | −0.004 (3) | −0.001 (3) | −0.001 (3) |
| C9 | 0.026 (3) | 0.026 (4) | 0.025 (4) | 0.000 (3) | 0.011 (3) | −0.002 (3) |
| C10 | 0.016 (3) | 0.010 (3) | 0.014 (3) | 0.002 (3) | 0.003 (3) | 0.000 (3) |
| C11 | 0.028 (4) | 0.021 (4) | 0.017 (3) | 0.003 (3) | −0.001 (3) | −0.002 (3) |
| C12 | 0.022 (3) | 0.020 (4) | 0.022 (3) | −0.002 (3) | −0.009 (3) | 0.000 (3) |
| C13 | 0.017 (3) | 0.010 (3) | 0.020 (3) | −0.002 (3) | 0.006 (3) | −0.002 (3) |
| C14 | 0.020 (3) | 0.022 (4) | 0.013 (3) | −0.001 (3) | 0.000 (3) | −0.001 (3) |
| C15 | 0.026 (4) | 0.025 (4) | 0.012 (3) | 0.004 (3) | 0.008 (3) | 0.003 (3) |
| C4A | 0.020 (3) | 0.015 (4) | 0.024 (3) | 0.000 (3) | 0.009 (3) | 0.002 (3) |
| C5A | 0.022 (3) | 0.015 (3) | 0.011 (3) | 0.003 (3) | 0.008 (3) | 0.003 (3) |
| C6A | 0.033 (3) | 0.015 (4) | 0.014 (4) | 0.008 (3) | 0.007 (3) | 0.000 (3) |
| C4B | 0.025 (5) | 0.016 (6) | 0.015 (5) | 0.004 (5) | 0.006 (5) | 0.001 (5) |
| C5B | 0.024 (6) | 0.020 (6) | 0.026 (6) | 0.000 (5) | 0.010 (5) | 0.001 (5) |
| C6B | 0.027 (5) | 0.021 (5) | 0.024 (5) | 0.002 (5) | 0.010 (4) | 0.001 (5) |
| C4C | 0.012 (3) | 0.018 (4) | 0.018 (3) | −0.002 (3) | 0.001 (3) | −0.003 (3) |
| C5C | 0.012 (3) | 0.017 (4) | 0.012 (3) | −0.001 (3) | −0.002 (3) | 0.000 (3) |
| C6C | 0.019 (3) | 0.015 (4) | 0.012 (3) | −0.002 (3) | 0.004 (3) | −0.001 (3) |
| S4 | 0.0305 (11) | 0.0339 (16) | 0.0588 (14) | −0.0056 (11) | 0.0250 (11) | −0.0026 (12) |
| S5 | 0.0204 (10) | 0.0262 (12) | 0.0319 (11) | 0.0003 (9) | 0.0046 (9) | −0.0031 (10) |
| S6 | 0.0292 (11) | 0.0190 (11) | 0.0142 (9) | −0.0007 (9) | 0.0053 (8) | −0.0010 (9) |
| S7 | 0.0263 (10) | 0.0191 (11) | 0.0157 (9) | −0.0017 (9) | 0.0075 (8) | −0.0033 (9) |
| S8 | 0.0256 (10) | 0.0229 (12) | 0.0175 (9) | 0.0008 (9) | 0.0073 (8) | −0.0053 (9) |
| S9 | 0.0188 (10) | 0.0243 (12) | 0.0231 (10) | −0.0012 (9) | 0.0047 (8) | −0.0029 (9) |
| S10 | 0.0190 (9) | 0.0192 (11) | 0.0162 (9) | −0.0016 (9) | 0.0023 (8) | −0.0002 (9) |
| S11 | 0.0201 (10) | 0.0231 (12) | 0.0176 (9) | −0.0038 (9) | 0.0052 (8) | −0.0013 (8) |
| S1A | 0.0212 (12) | 0.020 (3) | 0.0185 (13) | −0.0022 (18) | 0.0095 (12) | −0.0003 (15) |
| S2A | 0.0320 (12) | 0.0275 (14) | 0.0304 (12) | −0.0002 (11) | 0.0197 (10) | −0.0006 (11) |
| S3A | 0.0421 (14) | 0.0252 (14) | 0.0197 (11) | 0.0054 (11) | 0.0162 (10) | −0.0023 (10) |
| S1B | 0.015 (7) | 0.016 (8) | 0.017 (8) | 0.000 (7) | 0.007 (6) | −0.002 (7) |
| S2B | 0.030 (6) | 0.018 (6) | 0.016 (6) | 0.007 (5) | 0.008 (5) | 0.004 (5) |
| S3B | 0.027 (8) | 0.029 (9) | 0.025 (8) | 0.009 (7) | 0.010 (6) | −0.002 (7) |
| S1C | 0.0158 (9) | 0.0238 (12) | 0.0174 (9) | −0.0032 (8) | 0.0040 (7) | −0.0057 (8) |
| S2C | 0.0171 (9) | 0.0224 (12) | 0.0178 (9) | 0.0004 (8) | 0.0047 (8) | −0.0012 (8) |
| S3C | 0.0156 (9) | 0.0243 (12) | 0.0218 (9) | −0.0010 (8) | 0.0035 (8) | 0.0004 (9) |
| C4—C4A | 1.336 (11) | C13—C5C | 1.378 (8) |
| C4—C5B | 1.38 (9) | C13—S10 | 1.736 (7) |
| C4—S4 | 1.756 (7) | C13—S11 | 1.744 (6) |
| C4—S5 | 1.763 (7) | C14—C15 | 1.302 (8) |
| C5—C6 | 1.292 (9) | C14—S10 | 1.739 (6) |
| C5—S4 | 1.758 (8) | C14—H14A | 0.9500 |
| C5—H5A | 0.9500 | C15—S11 | 1.723 (7) |
| C6—S5 | 1.759 (7) | C15—H15A | 0.9500 |
| C6—H6A | 0.9500 | C4A—S1A | 1.743 (6) |
| C7—C4B | 1.28 (6) | C4A—S2A | 1.746 (7) |
| C7—C5A | 1.377 (9) | C5A—C6A | 1.418 (9) |
| C7—S7 | 1.727 (6) | C5A—S1A | 1.761 (6) |
| C7—S6 | 1.748 (7) | C6A—S3A | 1.646 (9) |
| C8—C9 | 1.327 (9) | C6A—S2A | 1.747 (10) |
| C8—S6 | 1.726 (7) | C4B—S2B | 1.743 (10) |
| C8—H8A | 0.9500 | C4B—S1B | 1.745 (10) |
| C9—S7 | 1.742 (7) | C5B—C6B | 1.417 (11) |
| C9—H9A | 0.9500 | C5B—S1B | 1.761 (10) |
| C10—C4C | 1.326 (8) | C6B—S3B | 1.649 (11) |
| C10—S9 | 1.765 (6) | C6B—S2B | 1.744 (11) |
| C10—S8 | 1.772 (6) | C4C—S2C | 1.741 (6) |
| C11—C12 | 1.343 (8) | C4C—S1C | 1.747 (6) |
| C11—S8 | 1.712 (7) | C5C—C6C | 1.415 (7) |
| C11—H11A | 0.9500 | C5C—S1C | 1.760 (6) |
| C12—S9 | 1.721 (7) | C6C—S3C | 1.652 (6) |
| C12—H12A | 0.9500 | C6C—S2C | 1.740 (6) |
| C4A—C4—S4 | 123.6 (5) | C4—C4A—S2A | 122.9 (7) |
| C5B—C4—S4 | 125 (3) | S1A—C4A—S2A | 115.1 (5) |
| C4A—C4—S5 | 122.7 (5) | C7—C5A—C6A | 125.6 (7) |
| C5B—C4—S5 | 121 (3) | C7—C5A—S1A | 117.0 (6) |
| S4—C4—S5 | 113.6 (4) | C6A—C5A—S1A | 117.4 (5) |
| C6—C5—S4 | 118.2 (6) | C5A—C6A—S3A | 126.5 (8) |
| C6—C5—H5A | 120.9 | C5A—C6A—S2A | 114.1 (6) |
| S4—C5—H5A | 120.9 | S3A—C6A—S2A | 119.4 (6) |
| C5—C6—S5 | 117.8 (7) | C7—C4B—S2B | 120 (5) |
| C5—C6—H6A | 121.1 | C7—C4B—S1B | 123 (5) |
| S5—C6—H6A | 121.1 | S2B—C4B—S1B | 114.8 (9) |
| C4B—C7—S7 | 117 (3) | C4—C5B—C6B | 123 (7) |
| C5A—C7—S7 | 120.7 (5) | C4—C5B—S1B | 123 (4) |
| C4B—C7—S6 | 128 (3) | C6B—C5B—S1B | 113 (5) |
| C5A—C7—S6 | 125.0 (5) | C5B—C6B—S3B | 126 (5) |
| S7—C7—S6 | 114.3 (4) | C5B—C6B—S2B | 118 (5) |
| C9—C8—S6 | 119.1 (6) | S3B—C6B—S2B | 116 (3) |
| C9—C8—H8A | 120.4 | C10—C4C—S2C | 122.5 (4) |
| S6—C8—H8A | 120.4 | C10—C4C—S1C | 123.1 (4) |
| C8—C9—S7 | 115.5 (5) | S2C—C4C—S1C | 114.4 (3) |
| C8—C9—H9A | 122.2 | C13—C5C—C6C | 124.4 (5) |
| S7—C9—H9A | 122.2 | C13—C5C—S1C | 118.0 (4) |
| C4C—C10—S9 | 123.5 (4) | C6C—C5C—S1C | 117.5 (4) |
| C4C—C10—S8 | 123.4 (5) | C5C—C6C—S3C | 126.5 (5) |
| S9—C10—S8 | 113.2 (4) | C5C—C6C—S2C | 113.8 (4) |
| C12—C11—S8 | 117.7 (5) | S3C—C6C—S2C | 119.6 (3) |
| C12—C11—H11A | 121.2 | C4—S4—C5 | 95.2 (4) |
| S8—C11—H11A | 121.2 | C6—S5—C4 | 95.2 (4) |
| C11—C12—S9 | 118.2 (6) | C8—S6—C7 | 94.7 (3) |
| C11—C12—H12A | 120.9 | C7—S7—C9 | 96.2 (3) |
| S9—C12—H12A | 120.9 | C11—S8—C10 | 95.6 (3) |
| C5C—C13—S10 | 126.7 (5) | C12—S9—C10 | 95.3 (3) |
| C5C—C13—S11 | 119.1 (5) | C13—S10—C14 | 94.6 (3) |
| S10—C13—S11 | 114.3 (4) | C15—S11—C13 | 95.3 (3) |
| C15—C14—S10 | 118.4 (5) | C4A—S1A—C5A | 95.6 (3) |
| C15—C14—H14A | 120.8 | C6A—S2A—C4A | 97.7 (5) |
| S10—C14—H14A | 120.8 | C4B—S1B—C5B | 98 (2) |
| C14—C15—S11 | 117.5 (5) | C6B—S2B—C4B | 96 (3) |
| C14—C15—H15A | 121.3 | C4C—S1C—C5C | 95.7 (3) |
| S11—C15—H15A | 121.3 | C6C—S2C—C4C | 98.3 (3) |
| C4—C4A—S1A | 122.0 (5) |