Literature DB >> 22259554

2,5-Bis(1,3-dithiol-2-yl-idene)-1,3-dithiol-ane-4-thione.

Kazumasa Ueda, Kenta Suzuki, Kei Kunimoto, Kenji Yoza.   

Abstract

The asymmetric unit of the title compound, C(9)H(4)S(7), contains two independent mol-ecules, in one of which the central five-membered ring is disordered over two orientations in a 0.924 (3):0.076 (3) ratio. The mol-ecular skeleton is almost planar: the average distance of the atoms from their mean plane is 0.128 (7) Å in the ordered mol-ecule, and 0.088 (5) and 0.123 (2) Å in the major and minor disorder components, respectively. The ordered and disordered mol-ecules form separate columns by stacking along the b axis. Adjacent columns inter-act via short S⋯S [3.33 (2), 3.434 (3), 3.444 (2), 3.503 (2), 3.519 (3) and 3.53 (4) Å] and S⋯H [2.814 (2), 2.87 (7), 2.92 (2), 2.9269 (18), 2.93 (2), 2.94 (2), 2.939 (2), 2.967 (2) and 2.974 (1) Å] contacts.

Entities:  

Year:  2011        PMID: 22259554      PMCID: PMC3254410          DOI: 10.1107/S1600536811051518

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to 2,5-di(1,3-dithiol-2-yl­idene)-1,3-dithiol­ane-4-thione derivatives, see: Iwamatsu et al. (1999 ▶, 2000 ▶); Wang et al. (2005 ▶, 2007 ▶); Hiraoka et al. (2005 ▶); Fujiwara et al. (2006 ▶, 2007 ▶); Ueda & Yoza (2009a ▶,b ▶,c ▶). For the synthesis, see: Ueda et al. (2010 ▶). For van der Waals radii, see: Bondi (1964 ▶).

Experimental

Crystal data

C9H4S7 M = 336.54 Monoclinic, a = 17.669 (5) Å b = 3.9110 (11) Å c = 18.380 (5) Å β = 108.177 (4)° V = 1206.8 (6) Å3 Z = 4 Mo Kα radiation μ = 1.27 mm−1 T = 93 K 0.09 × 0.02 × 0.02 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.894, T max = 0.975 6965 measured reflections 4975 independent reflections 3396 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.107 S = 0.98 4975 reflections 344 parameters 421 restraints H-atom parameters constrained Δρmax = 0.63 e Å−3 Δρmin = −0.52 e Å−3 Absolute structure: Flack (1983 ▶), 1849 Friedel pairs Flack parameter: −0.18 (18) Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: XCIF (Bruker, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811051518/fy2030sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811051518/fy2030Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811051518/fy2030Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H4S7F(000) = 680
Mr = 336.54Dx = 1.852 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 17.669 (5) ÅCell parameters from 794 reflections
b = 3.9110 (11) Åθ = 2.3–23.9°
c = 18.380 (5) ŵ = 1.27 mm1
β = 108.177 (4)°T = 93 K
V = 1206.8 (6) Å3Needle, black
Z = 40.09 × 0.02 × 0.02 mm
Bruker APEXII CCD area-detector diffractometer4975 independent reflections
Radiation source: Bruker TXS fine-focus rotating anode3396 reflections with I > 2σ(I)
Bruker Helios multilayer confocal mirrorRint = 0.054
Detector resolution: 8.333 pixels mm-1θmax = 27.5°, θmin = 1.9°
phi and ω scansh = −22→15
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −5→4
Tmin = 0.894, Tmax = 0.975l = −22→23
6965 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.061H-atom parameters constrained
wR(F2) = 0.107w = 1/[σ2(Fo2) + (0.0283P)2] where P = (Fo2 + 2Fc2)/3
S = 0.98(Δ/σ)max = 0.002
4975 reflectionsΔρmax = 0.63 e Å3
344 parametersΔρmin = −0.52 e Å3
421 restraintsAbsolute structure: Flack (1983), 1849 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.18 (18)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R– factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C40.3976 (4)0.7807 (19)0.2942 (4)0.0247 (17)
C50.5339 (4)1.060 (2)0.3647 (4)0.035 (2)
H5A0.58701.14300.37720.042*
C60.4937 (4)1.091 (2)0.4121 (5)0.035 (2)
H6A0.51601.19900.46040.043*
C70.1148 (4)0.3154 (18)0.1591 (4)0.0190 (16)
C8−0.0317 (4)0.151 (2)0.1023 (4)0.0244 (17)
H8A−0.08150.07670.06850.029*
C9−0.0268 (4)0.277 (2)0.1707 (4)0.0251 (18)
H9A−0.07180.29150.18840.030*
C100.3122 (4)0.6221 (18)0.8314 (3)0.0139 (14)
C110.3743 (4)0.922 (2)0.9615 (4)0.0238 (17)
H11A0.38391.01341.01150.029*
C120.4298 (4)0.941 (2)0.9257 (4)0.0248 (17)
H12A0.47921.05260.94900.030*
C130.1820 (4)0.1225 (19)0.5609 (4)0.0154 (15)
C140.1298 (4)−0.035 (2)0.4192 (4)0.0195 (16)
H14A0.0971−0.10980.37030.023*
C150.2009 (4)0.085 (2)0.4285 (3)0.0205 (17)
H15A0.22180.10030.38680.025*
C4A0.3347 (6)0.633 (2)0.2437 (4)0.0190 (17)0.924 (3)
C5A0.1947 (5)0.384 (2)0.1739 (4)0.0155 (15)0.924 (3)
C6A0.2391 (6)0.323 (3)0.1228 (5)0.021 (2)0.924 (3)
C4B0.191 (4)0.346 (17)0.181 (4)0.018 (4)0.076 (3)
C5B0.335 (6)0.59 (2)0.248 (3)0.023 (4)0.076 (3)
C6B0.331 (2)0.485 (10)0.173 (3)0.023 (3)0.076 (3)
C4C0.2640 (3)0.4578 (17)0.7717 (3)0.0170 (15)
C5C0.1960 (3)0.1937 (16)0.6374 (3)0.0151 (15)
C6C0.1387 (3)0.1573 (17)0.6762 (3)0.0158 (15)
S40.48789 (12)0.8603 (6)0.27620 (13)0.0385 (6)
S50.39615 (10)0.9263 (6)0.38449 (10)0.0270 (5)
S60.05349 (11)0.1230 (5)0.07570 (9)0.0211 (4)
S70.06754 (10)0.4126 (5)0.22574 (9)0.0201 (4)
S80.28575 (11)0.7290 (5)0.91400 (10)0.0219 (5)
S90.40896 (10)0.7580 (5)0.83649 (10)0.0225 (5)
S100.09618 (10)−0.0554 (5)0.49847 (9)0.0189 (4)
S110.25580 (10)0.2146 (5)0.51919 (9)0.0204 (4)
S1A0.2450 (5)0.5721 (17)0.2628 (3)0.0191 (11)0.924 (3)
S2A0.33680 (13)0.4760 (6)0.15541 (12)0.0277 (6)0.924 (3)
S3A0.20601 (13)0.1459 (6)0.03754 (11)0.0275 (6)0.924 (3)
S1B0.246 (6)0.52 (2)0.268 (3)0.015 (6)0.076 (3)
S2B0.242 (2)0.312 (11)0.114 (2)0.021 (4)0.076 (3)
S3B0.4040 (14)0.512 (7)0.1345 (13)0.026 (6)0.076 (3)
S1C0.28927 (10)0.3657 (5)0.68923 (9)0.0193 (4)
S2C0.16991 (10)0.3150 (5)0.76938 (9)0.0193 (4)
S3C0.04904 (10)−0.0125 (5)0.64141 (10)0.0211 (5)
U11U22U33U12U13U23
C40.025 (3)0.021 (4)0.032 (4)−0.001 (3)0.014 (3)0.000 (3)
C50.021 (4)0.028 (5)0.055 (5)−0.001 (3)0.012 (3)−0.006 (4)
C60.024 (4)0.028 (5)0.048 (4)−0.006 (3)0.002 (3)−0.004 (4)
C70.026 (3)0.013 (4)0.017 (3)0.005 (3)0.004 (3)0.000 (3)
C80.027 (4)0.018 (4)0.022 (3)−0.004 (3)−0.001 (3)−0.001 (3)
C90.026 (3)0.026 (4)0.025 (4)0.000 (3)0.011 (3)−0.002 (3)
C100.016 (3)0.010 (3)0.014 (3)0.002 (3)0.003 (3)0.000 (3)
C110.028 (4)0.021 (4)0.017 (3)0.003 (3)−0.001 (3)−0.002 (3)
C120.022 (3)0.020 (4)0.022 (3)−0.002 (3)−0.009 (3)0.000 (3)
C130.017 (3)0.010 (3)0.020 (3)−0.002 (3)0.006 (3)−0.002 (3)
C140.020 (3)0.022 (4)0.013 (3)−0.001 (3)0.000 (3)−0.001 (3)
C150.026 (4)0.025 (4)0.012 (3)0.004 (3)0.008 (3)0.003 (3)
C4A0.020 (3)0.015 (4)0.024 (3)0.000 (3)0.009 (3)0.002 (3)
C5A0.022 (3)0.015 (3)0.011 (3)0.003 (3)0.008 (3)0.003 (3)
C6A0.033 (3)0.015 (4)0.014 (4)0.008 (3)0.007 (3)0.000 (3)
C4B0.025 (5)0.016 (6)0.015 (5)0.004 (5)0.006 (5)0.001 (5)
C5B0.024 (6)0.020 (6)0.026 (6)0.000 (5)0.010 (5)0.001 (5)
C6B0.027 (5)0.021 (5)0.024 (5)0.002 (5)0.010 (4)0.001 (5)
C4C0.012 (3)0.018 (4)0.018 (3)−0.002 (3)0.001 (3)−0.003 (3)
C5C0.012 (3)0.017 (4)0.012 (3)−0.001 (3)−0.002 (3)0.000 (3)
C6C0.019 (3)0.015 (4)0.012 (3)−0.002 (3)0.004 (3)−0.001 (3)
S40.0305 (11)0.0339 (16)0.0588 (14)−0.0056 (11)0.0250 (11)−0.0026 (12)
S50.0204 (10)0.0262 (12)0.0319 (11)0.0003 (9)0.0046 (9)−0.0031 (10)
S60.0292 (11)0.0190 (11)0.0142 (9)−0.0007 (9)0.0053 (8)−0.0010 (9)
S70.0263 (10)0.0191 (11)0.0157 (9)−0.0017 (9)0.0075 (8)−0.0033 (9)
S80.0256 (10)0.0229 (12)0.0175 (9)0.0008 (9)0.0073 (8)−0.0053 (9)
S90.0188 (10)0.0243 (12)0.0231 (10)−0.0012 (9)0.0047 (8)−0.0029 (9)
S100.0190 (9)0.0192 (11)0.0162 (9)−0.0016 (9)0.0023 (8)−0.0002 (9)
S110.0201 (10)0.0231 (12)0.0176 (9)−0.0038 (9)0.0052 (8)−0.0013 (8)
S1A0.0212 (12)0.020 (3)0.0185 (13)−0.0022 (18)0.0095 (12)−0.0003 (15)
S2A0.0320 (12)0.0275 (14)0.0304 (12)−0.0002 (11)0.0197 (10)−0.0006 (11)
S3A0.0421 (14)0.0252 (14)0.0197 (11)0.0054 (11)0.0162 (10)−0.0023 (10)
S1B0.015 (7)0.016 (8)0.017 (8)0.000 (7)0.007 (6)−0.002 (7)
S2B0.030 (6)0.018 (6)0.016 (6)0.007 (5)0.008 (5)0.004 (5)
S3B0.027 (8)0.029 (9)0.025 (8)0.009 (7)0.010 (6)−0.002 (7)
S1C0.0158 (9)0.0238 (12)0.0174 (9)−0.0032 (8)0.0040 (7)−0.0057 (8)
S2C0.0171 (9)0.0224 (12)0.0178 (9)0.0004 (8)0.0047 (8)−0.0012 (8)
S3C0.0156 (9)0.0243 (12)0.0218 (9)−0.0010 (8)0.0035 (8)0.0004 (9)
C4—C4A1.336 (11)C13—C5C1.378 (8)
C4—C5B1.38 (9)C13—S101.736 (7)
C4—S41.756 (7)C13—S111.744 (6)
C4—S51.763 (7)C14—C151.302 (8)
C5—C61.292 (9)C14—S101.739 (6)
C5—S41.758 (8)C14—H14A0.9500
C5—H5A0.9500C15—S111.723 (7)
C6—S51.759 (7)C15—H15A0.9500
C6—H6A0.9500C4A—S1A1.743 (6)
C7—C4B1.28 (6)C4A—S2A1.746 (7)
C7—C5A1.377 (9)C5A—C6A1.418 (9)
C7—S71.727 (6)C5A—S1A1.761 (6)
C7—S61.748 (7)C6A—S3A1.646 (9)
C8—C91.327 (9)C6A—S2A1.747 (10)
C8—S61.726 (7)C4B—S2B1.743 (10)
C8—H8A0.9500C4B—S1B1.745 (10)
C9—S71.742 (7)C5B—C6B1.417 (11)
C9—H9A0.9500C5B—S1B1.761 (10)
C10—C4C1.326 (8)C6B—S3B1.649 (11)
C10—S91.765 (6)C6B—S2B1.744 (11)
C10—S81.772 (6)C4C—S2C1.741 (6)
C11—C121.343 (8)C4C—S1C1.747 (6)
C11—S81.712 (7)C5C—C6C1.415 (7)
C11—H11A0.9500C5C—S1C1.760 (6)
C12—S91.721 (7)C6C—S3C1.652 (6)
C12—H12A0.9500C6C—S2C1.740 (6)
C4A—C4—S4123.6 (5)C4—C4A—S2A122.9 (7)
C5B—C4—S4125 (3)S1A—C4A—S2A115.1 (5)
C4A—C4—S5122.7 (5)C7—C5A—C6A125.6 (7)
C5B—C4—S5121 (3)C7—C5A—S1A117.0 (6)
S4—C4—S5113.6 (4)C6A—C5A—S1A117.4 (5)
C6—C5—S4118.2 (6)C5A—C6A—S3A126.5 (8)
C6—C5—H5A120.9C5A—C6A—S2A114.1 (6)
S4—C5—H5A120.9S3A—C6A—S2A119.4 (6)
C5—C6—S5117.8 (7)C7—C4B—S2B120 (5)
C5—C6—H6A121.1C7—C4B—S1B123 (5)
S5—C6—H6A121.1S2B—C4B—S1B114.8 (9)
C4B—C7—S7117 (3)C4—C5B—C6B123 (7)
C5A—C7—S7120.7 (5)C4—C5B—S1B123 (4)
C4B—C7—S6128 (3)C6B—C5B—S1B113 (5)
C5A—C7—S6125.0 (5)C5B—C6B—S3B126 (5)
S7—C7—S6114.3 (4)C5B—C6B—S2B118 (5)
C9—C8—S6119.1 (6)S3B—C6B—S2B116 (3)
C9—C8—H8A120.4C10—C4C—S2C122.5 (4)
S6—C8—H8A120.4C10—C4C—S1C123.1 (4)
C8—C9—S7115.5 (5)S2C—C4C—S1C114.4 (3)
C8—C9—H9A122.2C13—C5C—C6C124.4 (5)
S7—C9—H9A122.2C13—C5C—S1C118.0 (4)
C4C—C10—S9123.5 (4)C6C—C5C—S1C117.5 (4)
C4C—C10—S8123.4 (5)C5C—C6C—S3C126.5 (5)
S9—C10—S8113.2 (4)C5C—C6C—S2C113.8 (4)
C12—C11—S8117.7 (5)S3C—C6C—S2C119.6 (3)
C12—C11—H11A121.2C4—S4—C595.2 (4)
S8—C11—H11A121.2C6—S5—C495.2 (4)
C11—C12—S9118.2 (6)C8—S6—C794.7 (3)
C11—C12—H12A120.9C7—S7—C996.2 (3)
S9—C12—H12A120.9C11—S8—C1095.6 (3)
C5C—C13—S10126.7 (5)C12—S9—C1095.3 (3)
C5C—C13—S11119.1 (5)C13—S10—C1494.6 (3)
S10—C13—S11114.3 (4)C15—S11—C1395.3 (3)
C15—C14—S10118.4 (5)C4A—S1A—C5A95.6 (3)
C15—C14—H14A120.8C6A—S2A—C4A97.7 (5)
S10—C14—H14A120.8C4B—S1B—C5B98 (2)
C14—C15—S11117.5 (5)C6B—S2B—C4B96 (3)
C14—C15—H15A121.3C4C—S1C—C5C95.7 (3)
S11—C15—H15A121.3C6C—S2C—C4C98.3 (3)
C4—C4A—S1A122.0 (5)
  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Antiferromagnetic or canted antiferromagnetic orderings of Fe(III) d spins of FeX4- ions in BEDT-TTFVO(S).FeX4 (X = Cl, Br) [BEDT-TTFVO(S) = bis(ethylenedithio)tetrathiafulvalenoquinone(-thioquinone)-1,3-dithiolemethide].

Authors:  Mingxing Wang; Xunwen Xiao; Hideki Fujiwara; Toyonari Sugimoto; Satoru Noguchi; Takekazu Ishida; Takehiko Mori; Hiroko Aruga Katori
Journal:  Inorg Chem       Date:  2007-03-23       Impact factor: 5.165

3.  1:1 complexes of dimethylthio- and ethylenedithio-tetrathiafulvalenothioquinone-1,3-dithiolemethides with CuBr2 as a new type of pi/d molecular system.

Authors:  M Iwamatsu; T Kominami; K Ueda; T Sugimoto; T Adachi; H Fujita; H Yoshino; Y Mizuno; K Murata; M Shiro
Journal:  Inorg Chem       Date:  2000-08-21       Impact factor: 5.165

4.  Ferromagnetic ordering of Fe(III) d spins of FeBr4- ions in (ethylenedithiotetrathiafulvalenothioquinone-ethylenedithio-1,3-dithiolemethide) x FeBr4.

Authors:  Mingxing Wang; Hideki Fujiwara; Toyonari Sugimoto; Satoru Noguchi; Takekazu Ishida
Journal:  Inorg Chem       Date:  2005-03-07       Impact factor: 5.165

5.  (5E)-2-[4,5-Bis(methyl-sulfan-yl)-1,3-dithiol-2-yl-idene]-5-(4-iodo-1,3-dithiol-2-yl-idene)-1,3-dithio-lan-4-one.

Authors:  Kazumasa Ueda; Kenji Yoza
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-31

6.  5-(4,5-Diiodo-1,3-dithiol-2-yl-idene)-4',5'-bis(methyl-sulfan-yl)-2,2'-bi-1,3-dithiol-4(5H)-one.

Authors:  Kazumasa Ueda; Kenji Yoza
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-10

7.  5-(4,5-Diiodo-1,3-dithiol-2-yl-idene)-4',5'-bis-(methyl-sulfan-yl)-2,2'-bi-1,3-dithiole-4(5H)-thione.

Authors:  Kazumasa Ueda; Kenji Yoza
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-23
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.