Literature DB >> 21578498

(5E)-2-[4,5-Bis(methyl-sulfan-yl)-1,3-dithiol-2-yl-idene]-5-(4-iodo-1,3-dithiol-2-yl-idene)-1,3-dithio-lan-4-one.

Kazumasa Ueda, Kenji Yoza.   

Abstract

The mol-ecular framework of the title compound, C(11)H(7)IOS(8), is almost planar [maximum deviation = 0.040 (4) Å], except for the two methyl-sulfanyl groups, which are twisted relative to the mol-ecular skeleton, making C-S-C-C torsion angles of 144.1 (8) and -141.3 (8)°. In the crystal, mol-ecules are stacked alternately in opposite orientations, forming a one-dimensional column parallel to [110]. The primary inter-actions between mol-ecules comprising the columns are of the S⋯S type [3.554 (1) Å]. Inter-actions between columns are of the S⋯S type [3.411 (1) along b and 3.444 (1) Å along c], as well as S⋯I contacts [3.435 (2) Å].

Entities:  

Year:  2009        PMID: 21578498      PMCID: PMC2971353          DOI: 10.1107/S1600536809044493

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to 2,5-di(1,3-dithiole-2-yl­idene)-1,3-dithio­lan-4-one derivatives, see: Iwamatsu et al. (1999 ▶); Matsumoto et al. (2002 ▶, 2003 ▶); Hiraoka et al. (2007 ▶); Ueda & Yoza (2009 ▶). For the synthesis, see: Ueda & Yoza (2009 ▶). For background to inter­molecular S⋯I contacts, see: Blake et al. (1997 ▶, 1998 ▶, 1999 ▶); Bricklebank et al. (2000 ▶); Ouvrard et al. (2003 ▶). For van der Waals radii, see: Bondi (1964 ▶).

Experimental

Crystal data

C11H7IOS8 M = 538.55 Triclinic, a = 8.309 (3) Å b = 8.344 (3) Å c = 14.618 (7) Å α = 90.851 (6)° β = 105.132 (6)° γ = 118.510 (4)° V = 848.0 (6) Å3 Z = 2 Mo Kα radiation μ = 2.87 mm−1 T = 93 K 0.04 × 0.04 × 0.04 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.894, T max = 0.894 9773 measured reflections 3820 independent reflections 3065 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.161 S = 1.07 3820 reflections 190 parameters H-atom parameters constrained Δρmax = 2.34 e Å−3 Δρmin = −1.13 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: XCIF (Bruker, 2001 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809044493/tk2559sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809044493/tk2559Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H7IOS8Z = 2
Mr = 538.55F(000) = 524
Triclinic, P1Dx = 2.109 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.309 (3) ÅCell parameters from 2153 reflections
b = 8.344 (3) Åθ = 2.8–25.3°
c = 14.618 (7) ŵ = 2.87 mm1
α = 90.851 (6)°T = 93 K
β = 105.132 (6)°Block, dark-red
γ = 118.510 (4)°0.04 × 0.04 × 0.04 mm
V = 848.0 (6) Å3
Bruker APEXII CCD area-detector diffractometer3820 independent reflections
Radiation source: Bruker TXS fine-focus rotating anode3065 reflections with I > 2σ(I)
Bruker Helios multilayer confocal mirrorRint = 0.050
Detector resolution: 8.333 pixels mm-1θmax = 27.5°, θmin = 1.5°
φ and ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −10→10
Tmin = 0.894, Tmax = 0.894l = −18→18
9773 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.161H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0842P)2 + 3.4063P] where P = (Fo2 + 2Fc2)/3
3820 reflections(Δ/σ)max = 0.001
190 parametersΔρmax = 2.34 e Å3
0 restraintsΔρmin = −1.13 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7414 (11)0.3494 (11)1.2804 (5)0.0208 (15)
C20.7832 (11)0.2717 (10)1.2163 (5)0.0200 (15)
H2A0.79570.16521.22520.024*
C30.7600 (10)0.5445 (10)1.1458 (5)0.0171 (14)
C40.7523 (10)0.6656 (10)1.0854 (5)0.0147 (14)
C50.7096 (11)0.8045 (10)1.1130 (5)0.0176 (15)
C60.7518 (10)0.8433 (10)0.9411 (5)0.0188 (15)
C70.7691 (10)0.9104 (10)0.8586 (5)0.0168 (14)
C80.7811 (11)1.1023 (10)0.7195 (5)0.0195 (15)
C90.8259 (11)0.9774 (10)0.6922 (6)0.0227 (16)
C100.5811 (14)1.2907 (13)0.6735 (8)0.040 (2)
H10A0.56631.38600.64010.060*
H10B0.60511.32210.74240.060*
H10C0.46331.17080.64810.060*
C110.7773 (12)0.7290 (12)0.5471 (7)0.0317 (19)
H11A0.80720.70930.48880.048*
H11B0.63810.67630.53240.048*
H11C0.82180.66860.59640.048*
I10.72165 (7)0.26967 (7)1.41327 (4)0.02158 (17)
O10.6819 (8)0.8263 (7)1.1898 (4)0.0248 (12)
S20.6928 (3)0.9427 (3)1.02369 (13)0.0204 (4)
S30.7856 (3)0.6574 (3)0.97138 (13)0.0192 (4)
S40.7150 (3)0.5414 (2)1.25643 (13)0.0180 (4)
S50.8134 (3)0.3773 (3)1.11542 (14)0.0223 (4)
S60.7799 (3)1.2779 (3)0.65508 (14)0.0222 (4)
S70.8283 (3)0.8205 (3)0.77148 (14)0.0215 (4)
S80.7337 (3)1.0982 (3)0.83040 (14)0.0212 (4)
S90.8974 (4)0.9749 (3)0.59090 (16)0.0318 (5)
U11U22U33U12U13U23
C10.018 (4)0.025 (4)0.019 (4)0.011 (3)0.004 (3)0.005 (3)
C20.029 (4)0.017 (4)0.018 (4)0.015 (3)0.008 (3)0.006 (3)
C30.014 (3)0.015 (3)0.021 (4)0.005 (3)0.006 (3)0.001 (3)
C40.018 (3)0.014 (3)0.016 (3)0.010 (3)0.006 (3)0.004 (3)
C50.021 (4)0.021 (4)0.014 (3)0.011 (3)0.007 (3)0.004 (3)
C60.019 (4)0.020 (4)0.018 (4)0.010 (3)0.006 (3)0.003 (3)
C70.017 (3)0.017 (4)0.014 (3)0.007 (3)0.005 (3)0.002 (3)
C80.022 (4)0.021 (4)0.014 (4)0.008 (3)0.010 (3)0.005 (3)
C90.024 (4)0.016 (4)0.027 (4)0.005 (3)0.014 (3)0.007 (3)
C100.045 (6)0.035 (5)0.062 (7)0.028 (5)0.032 (5)0.027 (5)
C110.030 (4)0.026 (4)0.038 (5)0.010 (4)0.016 (4)0.002 (4)
I10.0234 (3)0.0216 (3)0.0216 (3)0.0115 (2)0.0088 (2)0.00788 (19)
O10.034 (3)0.022 (3)0.026 (3)0.017 (3)0.014 (3)0.010 (2)
S20.0297 (10)0.0244 (10)0.0164 (9)0.0194 (8)0.0092 (8)0.0063 (7)
S30.0267 (10)0.0213 (9)0.0160 (9)0.0154 (8)0.0094 (8)0.0053 (7)
S40.0220 (9)0.0180 (9)0.0191 (9)0.0113 (7)0.0111 (7)0.0063 (7)
S50.0311 (10)0.0206 (9)0.0213 (10)0.0160 (8)0.0110 (8)0.0041 (7)
S60.0270 (10)0.0246 (10)0.0191 (9)0.0134 (8)0.0119 (8)0.0101 (7)
S70.0282 (10)0.0221 (9)0.0194 (9)0.0145 (8)0.0113 (8)0.0048 (7)
S80.0267 (10)0.0261 (10)0.0185 (9)0.0169 (8)0.0109 (8)0.0084 (7)
S90.0504 (13)0.0232 (10)0.0270 (11)0.0150 (10)0.0265 (10)0.0058 (8)
C1—C21.337 (11)C7—S71.755 (7)
C1—S41.746 (8)C7—S81.762 (8)
C1—I12.083 (8)C8—C91.349 (11)
C2—S51.741 (8)C8—S61.755 (8)
C2—H2A0.9500C8—S81.763 (7)
C3—C41.365 (10)C9—S91.736 (8)
C3—S51.737 (7)C9—S71.765 (8)
C3—S41.751 (8)C10—S61.792 (9)
C4—C51.444 (10)C10—H10A0.9800
C4—S31.764 (7)C10—H10B0.9800
C5—O11.230 (9)C10—H10C0.9800
C5—S21.777 (8)C11—S91.813 (9)
C6—C71.350 (10)C11—H11A0.9800
C6—S21.747 (8)C11—H11B0.9800
C6—S31.747 (8)C11—H11C0.9800
C2—C1—S4118.7 (6)C8—C9—S9124.2 (6)
C2—C1—I1124.9 (6)C8—C9—S7116.2 (6)
S4—C1—I1116.2 (4)S9—C9—S7119.4 (5)
C1—C2—S5116.1 (6)S6—C10—H10A109.5
C1—C2—H2A122.0S6—C10—H10B109.5
S5—C2—H2A122.0H10A—C10—H10B109.5
C4—C3—S5121.0 (6)S6—C10—H10C109.5
C4—C3—S4124.0 (6)H10A—C10—H10C109.5
S5—C3—S4115.1 (4)H10B—C10—H10C109.5
C3—C4—C5119.7 (7)S9—C11—H11A109.5
C3—C4—S3122.9 (6)S9—C11—H11B109.5
C5—C4—S3117.3 (5)H11A—C11—H11B109.5
O1—C5—C4124.7 (7)S9—C11—H11C109.5
O1—C5—S2121.3 (6)H11A—C11—H11C109.5
C4—C5—S2113.9 (5)H11B—C11—H11C109.5
C7—C6—S2120.1 (6)C6—S2—C596.5 (4)
C7—C6—S3123.1 (6)C6—S3—C495.3 (3)
S2—C6—S3116.8 (4)C1—S4—C394.2 (4)
C6—C7—S7123.5 (6)C3—S5—C295.8 (4)
C6—C7—S8121.9 (6)C8—S6—C10102.2 (4)
S7—C7—S8114.6 (4)C7—S7—C996.0 (4)
C9—C8—S6124.3 (6)C7—S8—C895.1 (4)
C9—C8—S8118.1 (6)C9—S9—C11101.7 (4)
S6—C8—S8117.4 (4)
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Journal:  Inorg Chem       Date:  2002-09-09       Impact factor: 5.165

3.  5-(4,5-Diiodo-1,3-dithiol-2-yl-idene)-4',5'-bis(methyl-sulfan-yl)-2,2'-bi-1,3-dithiol-4(5H)-one.

Authors:  Kazumasa Ueda; Kenji Yoza
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-10

4.  Halogen-bond geometry: a crystallographic database investigation of dihalogen complexes.

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1.  2,5-Bis(1,3-dithiol-2-yl-idene)-1,3-dithiol-ane-4-thione.

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