Literature DB >> 21578314

5-(4,5-Diiodo-1,3-dithiol-2-yl-idene)-4',5'-bis(methyl-sulfan-yl)-2,2'-bi-1,3-dithiol-4(5H)-one.

Kazumasa Ueda, Kenji Yoza.   

Abstract

The mol-ecular framework of the title compound, C(11)H(6)I(2)OS(8), is almost planar [maximum deviation = 0.057 (5) Å] except for the two methyl-sulfanyl groups, which are twisted relative to the mol-ecular skeleton, with C-C-S-C torsion angles of 49.74 (22) and 82.91 (21)°. In the crystal, mol-ecules are stacked alternately in opposite orientations, forming a one-dimensional column along the b axis. The inter-action between adjacent columns is accomplished through S⋯S [3.4289 (5) Å], S⋯I [3.4498 (4) Å] and O⋯I [2.812 (2) Å] contacts.

Entities:  

Year:  2009        PMID: 21578314      PMCID: PMC2971092          DOI: 10.1107/S160053680904032X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to tetra­thia­fulvalenoquinone-1,3-dithiol­emethide derivatives, see: Matsumoto et al. (2002a ▶,b ▶; 2003 ▶); Hiraoka et al. (2007 ▶); Sugimoto (2008 ▶). For the synthesis, see: Iwamatsu et al. (1999 ▶). For background to inter­molecular I⋯O contacts, see: Etter (1976a ▶,b ▶); Groth & Hassel (1965 ▶); Leser & Rabinovich (1978 ▶). For van der Waals radii, see: Bondi (1964 ▶).

Experimental

Crystal data

C11H6I2OS8 M = 664.44 Monoclinic, a = 7.7642 (14) Å b = 17.652 (3) Å c = 14.124 (3) Å β = 98.188 (2)° V = 1916.0 (6) Å3 Z = 4 Mo Kα radiation μ = 4.15 mm−1 T = 93 K 0.10 × 0.07 × 0.03 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.682, T max = 0.886 11092 measured reflections 4403 independent reflections 3764 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.051 S = 0.99 4403 reflections 201 parameters H-atom parameters constrained Δρmax = 0.72 e Å−3 Δρmin = −0.56 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XSHEL (Bruker, 2002 ▶); software used to prepare material for publication: XCIF (Bruker, 2001 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680904032X/tk2544sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680904032X/tk2544Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H6I2OS8F(000) = 1256
Mr = 664.44Dx = 2.303 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 7.7642 (14) ÅCell parameters from 3988 reflections
b = 17.652 (3) Åθ = 2.3–27.5°
c = 14.124 (3) ŵ = 4.15 mm1
β = 98.188 (2)°T = 93 K
V = 1916.0 (6) Å3Plate, dark-red
Z = 40.10 × 0.07 × 0.03 mm
Bruker APEXII CCD area-detector diffractometer4403 independent reflections
Radiation source: Bruker TXS fine-focus rotating anode3764 reflections with I > 2σ(I)
Bruker Helios multilayer confocal mirrorRint = 0.030
Detector resolution: 8.333 pixels mm-1θmax = 27.6°, θmin = 1.9°
φ and ω scansh = −6→10
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −22→22
Tmin = 0.682, Tmax = 0.886l = −18→15
11092 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.051H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.019P)2] where P = (Fo2 + 2Fc2)/3
4403 reflections(Δ/σ)max = 0.006
201 parametersΔρmax = 0.72 e Å3
0 restraintsΔρmin = −0.56 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I2−0.12578 (3)0.013561 (12)0.111820 (14)0.01793 (6)
I1−0.15011 (3)−0.203405 (12)0.164968 (14)0.01569 (6)
C90.6068 (4)0.19937 (18)0.7771 (2)0.0152 (7)
C1−0.0462 (4)−0.11760 (18)0.2570 (2)0.0149 (7)
C60.4087 (4)0.01803 (18)0.6428 (2)0.0136 (6)
C40.2274 (4)−0.04697 (17)0.4954 (2)0.0120 (6)
C80.6498 (4)0.14725 (18)0.8460 (2)0.0154 (7)
C2−0.0379 (4)−0.04383 (18)0.2381 (2)0.0143 (7)
C30.1281 (4)−0.06019 (17)0.4091 (2)0.0123 (6)
C70.4882 (4)0.07062 (18)0.7018 (2)0.0142 (7)
C50.2707 (4)−0.10758 (18)0.5631 (2)0.0142 (6)
S60.49464 (10)0.16647 (5)0.66722 (6)0.01662 (17)
S40.30314 (10)0.04434 (4)0.52857 (5)0.01454 (16)
S20.06947 (10)0.01342 (4)0.32957 (5)0.01350 (16)
S70.75758 (11)0.16499 (5)0.96192 (6)0.02020 (18)
S50.59033 (10)0.05246 (5)0.81921 (6)0.01688 (17)
S30.39758 (10)−0.07854 (5)0.67194 (6)0.01666 (17)
S10.05054 (10)−0.14886 (4)0.36963 (6)0.01449 (17)
S80.63332 (11)0.29739 (5)0.79188 (6)0.02255 (19)
O10.2235 (3)−0.17383 (12)0.54846 (15)0.0180 (5)
C110.7178 (5)0.3241 (2)0.6839 (3)0.0263 (8)
H13A0.83050.29940.68250.039*
H13B0.73260.37920.68250.039*
H13C0.63620.30810.62800.039*
C100.5747 (5)0.1720 (2)1.0279 (2)0.0303 (9)
H12A0.50260.21561.00450.045*
H12B0.61740.17871.09600.045*
H12C0.50510.12561.01870.045*
U11U22U33U12U13U23
I20.01932 (12)0.02057 (12)0.01307 (11)0.00006 (9)−0.00063 (8)0.00219 (8)
I10.01529 (11)0.01492 (11)0.01614 (11)−0.00063 (8)−0.00027 (8)−0.00382 (8)
C90.0150 (16)0.0153 (17)0.0153 (16)−0.0013 (13)0.0020 (12)−0.0021 (13)
C10.0128 (15)0.0164 (17)0.0153 (16)−0.0002 (13)0.0014 (12)−0.0051 (13)
C60.0140 (15)0.0145 (17)0.0117 (15)0.0028 (13)−0.0003 (12)0.0016 (12)
C40.0151 (15)0.0091 (16)0.0122 (15)0.0011 (12)0.0028 (12)−0.0019 (12)
C80.0142 (16)0.0163 (17)0.0156 (17)−0.0025 (13)0.0019 (13)−0.0050 (13)
C20.0120 (15)0.0183 (18)0.0118 (16)−0.0014 (13)−0.0016 (12)0.0003 (13)
C30.0119 (15)0.0114 (16)0.0141 (16)0.0013 (12)0.0038 (12)0.0009 (12)
C70.0119 (15)0.0174 (17)0.0136 (16)−0.0007 (12)0.0029 (12)−0.0011 (13)
C50.0103 (15)0.0164 (17)0.0165 (16)0.0033 (12)0.0037 (12)0.0009 (13)
S60.0201 (4)0.0142 (4)0.0148 (4)−0.0009 (3)0.0000 (3)−0.0002 (3)
S40.0172 (4)0.0111 (4)0.0143 (4)−0.0004 (3)−0.0011 (3)−0.0005 (3)
S20.0170 (4)0.0104 (4)0.0123 (4)−0.0004 (3)−0.0005 (3)0.0008 (3)
S70.0217 (4)0.0225 (5)0.0151 (4)−0.0016 (4)−0.0021 (3)−0.0028 (3)
S50.0198 (4)0.0152 (4)0.0149 (4)−0.0016 (3)−0.0003 (3)−0.0011 (3)
S30.0206 (4)0.0137 (4)0.0143 (4)−0.0007 (3)−0.0023 (3)0.0011 (3)
S10.0175 (4)0.0101 (4)0.0150 (4)0.0002 (3)−0.0009 (3)−0.0004 (3)
S80.0317 (5)0.0141 (4)0.0218 (5)−0.0030 (4)0.0036 (4)−0.0037 (3)
O10.0220 (12)0.0136 (12)0.0170 (12)−0.0005 (10)−0.0016 (9)0.0008 (9)
C110.032 (2)0.0164 (19)0.031 (2)−0.0020 (15)0.0087 (16)0.0030 (15)
C100.036 (2)0.036 (2)0.0183 (19)0.0172 (18)0.0010 (15)−0.0053 (16)
I2—C22.080 (3)C2—S21.755 (3)
I1—C12.082 (3)C3—S21.736 (3)
C9—C81.347 (4)C3—S11.740 (3)
C9—S81.751 (3)C7—S61.764 (3)
C9—S61.766 (3)C7—S51.763 (3)
C1—C21.333 (4)C5—O11.234 (4)
C1—S11.749 (3)C5—S31.780 (3)
C6—C71.338 (4)S7—C101.810 (4)
C6—S31.759 (3)S8—C111.807 (4)
C6—S41.765 (3)C11—H13A0.9800
C4—C31.366 (4)C11—H13B0.9800
C4—C51.442 (4)C11—H13C0.9800
C4—S41.756 (3)C10—H12A0.9800
C8—S71.757 (3)C10—H12B0.9800
C8—S51.763 (3)C10—H12C0.9800
C8—C9—S8125.2 (2)O1—C5—C4123.8 (3)
C8—C9—S6116.8 (2)O1—C5—S3122.1 (2)
S8—C9—S6117.69 (18)C4—C5—S3114.0 (2)
C2—C1—S1117.6 (2)C7—S6—C995.85 (15)
C2—C1—I1127.7 (2)C4—S4—C695.57 (15)
S1—C1—I1114.61 (17)C3—S2—C295.67 (15)
C7—C6—S3124.1 (2)C8—S7—C10100.80 (15)
C7—C6—S4120.0 (2)C8—S5—C795.65 (15)
S3—C6—S4115.91 (17)C6—S3—C596.70 (15)
C3—C4—C5120.9 (3)C3—S1—C195.27 (14)
C3—C4—S4121.3 (2)C9—S8—C11101.97 (16)
C5—C4—S4117.8 (2)S8—C11—H13A109.5
C9—C8—S7126.0 (3)S8—C11—H13B109.5
C9—C8—S5117.6 (2)H13A—C11—H13B109.5
S7—C8—S5116.41 (18)S8—C11—H13C109.5
C1—C2—S2116.5 (2)H13A—C11—H13C109.5
C1—C2—I2128.9 (2)H13B—C11—H13C109.5
S2—C2—I2114.47 (17)S7—C10—H12A109.5
C4—C3—S2120.8 (2)S7—C10—H12B109.5
C4—C3—S1124.4 (2)H12A—C10—H12B109.5
S2—C3—S1114.77 (16)S7—C10—H12C109.5
C6—C7—S6121.5 (2)H12A—C10—H12C109.5
C6—C7—S5124.4 (3)H12B—C10—H12C109.5
S6—C7—S5114.10 (17)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Metallic conductivity and ferromagnetic interaction of iron(III) d spins in the needle crystals of (ethylenedithiotetrathiafulvalenoquinone-1,3-dithiolemethide)(2).FeBr(4) salt.

Authors:  Takuya Matsumoto; Tsuyoshi Kominami; Kazumasa Ueda; Toyonari Sugimoto; Toshiji Tada; Satoru Noguchi; Harukazu Yoshino; Keizo Murata; Motoo Shiro; Ei-Ichi Negishi; Naoki Toyota; Satoshi Endo; Kazuko Takahashi
Journal:  Inorg Chem       Date:  2002-09-09       Impact factor: 5.165

  2 in total
  2 in total

1.  (5E)-2-[4,5-Bis(methyl-sulfan-yl)-1,3-dithiol-2-yl-idene]-5-(4-iodo-1,3-dithiol-2-yl-idene)-1,3-dithio-lan-4-one.

Authors:  Kazumasa Ueda; Kenji Yoza
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-31

2.  2,5-Bis(1,3-dithiol-2-yl-idene)-1,3-dithiol-ane-4-thione.

Authors:  Kazumasa Ueda; Kenta Suzuki; Kei Kunimoto; Kenji Yoza
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-10
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.