Literature DB >> 21578421

5-(4,5-Diiodo-1,3-dithiol-2-yl-idene)-4',5'-bis-(methyl-sulfan-yl)-2,2'-bi-1,3-dithiole-4(5H)-thione.

Kazumasa Ueda, Kenji Yoza.   

Abstract

The mol-ecular skeleton of the title mol-ecule, C(11)H(6)I(2)S(9), is nearly planar [maximum deviation 0.052 (3) Å] except for the two methyl groups. In the crystal, mol-ecules related by translation along b axis are associated into columns through π-π inter-actions between the five-membered rings, with a centroid-centroid distance of 3.593 (5) Å. Inter-action between adjacent columns is accomplished by short S⋯I contacts of 3.2099 (4) Å.

Entities:  

Year:  2009        PMID: 21578421      PMCID: PMC2970979          DOI: 10.1107/S1600536809042573

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to tetra­thia­fulvalenothio­quinone-1,3-dithiol­emethide derivatives, see: Iwamatsu et al. (2000 ▶); Wang et al. (2005 ▶, 2007 ▶); Hiraoka et al. (2005 ▶); Fujiwara et al. (2006 ▶, 2007 ▶). For details of the synthesis, see Iwamatsu et al. (1999 ▶). For inter­molecular S⋯I contacts, see: Ahlsen & Strømme (1974 ▶); Herbstein & Schwortzer (1984 ▶); Freemanm et al. (1988 ▶); Bigoli et al. (1996 ▶). For van der Waals radii, see: Bondi (1964 ▶).

Experimental

Crystal data

C11H6I2S9 M = 680.50 Monoclinic, a = 29.540 (7) Å b = 5.3543 (13) Å c = 25.163 (6) Å β = 103.544 (3)° V = 3869.2 (16) Å3 Z = 8 Mo Kα radiation μ = 4.21 mm−1 T = 93 K 0.55 × 0.18 × 0.01 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.205, T max = 0.979 10568 measured reflections 4387 independent reflections 3536 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.090 S = 1.07 4387 reflections 201 parameters H-atom parameters constrained Δρmax = 3.45 e Å−3 Δρmin = −2.31 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: XCIF (Bruker, 2001 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809042573/cv2627sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809042573/cv2627Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H6I2S9F(000) = 2576
Mr = 680.50Dx = 2.336 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2871 reflections
a = 29.540 (7) Åθ = 2.4–27.5°
b = 5.3543 (13) ŵ = 4.21 mm1
c = 25.163 (6) ÅT = 93 K
β = 103.544 (3)°Needle, black
V = 3869.2 (16) Å30.55 × 0.18 × 0.01 mm
Z = 8
Bruker APEXII CCD area-detector diffractometer4387 independent reflections
Radiation source: Bruker TXS fine-focus rotating anode3536 reflections with I > 2σ(I)
Bruker Helios multilayer confocal mirrorRint = 0.040
Detector resolution: 8.333 pixels mm-1θmax = 27.5°, θmin = 1.4°
φ and ω scansh = −38→36
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −6→6
Tmin = 0.205, Tmax = 0.979l = −24→32
10568 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.028P)2 + 20.8292P] where P = (Fo2 + 2Fc2)/3
4387 reflections(Δ/σ)max = 0.002
201 parametersΔρmax = 3.45 e Å3
0 restraintsΔρmin = −2.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.01287 (15)1.3727 (9)0.35298 (19)0.0158 (10)
C21.02057 (16)1.2692 (10)0.4024 (2)0.0198 (11)
C30.94845 (15)1.0393 (9)0.34447 (18)0.0150 (10)
C40.91248 (16)0.8707 (9)0.32900 (19)0.0157 (10)
C50.88305 (16)0.8507 (9)0.27608 (19)0.0152 (10)
C60.85596 (16)0.5009 (9)0.3338 (2)0.0177 (10)
C70.83308 (16)0.3149 (10)0.35177 (19)0.0180 (11)
C80.80459 (17)−0.0037 (10)0.4151 (2)0.0213 (11)
C90.77585 (16)−0.0346 (10)0.3660 (2)0.0197 (11)
C100.8099 (2)0.0697 (12)0.5245 (2)0.0345 (14)
H10A0.84310.10960.53590.052*
H10B0.79880.01280.55620.052*
H10C0.79250.21900.50900.052*
C110.68641 (17)−0.0497 (11)0.3739 (2)0.0244 (12)
H11A0.6975−0.02110.41320.037*
H11B0.6563−0.13580.36670.037*
H11C0.68280.11100.35470.037*
I11.052758 (10)1.64937 (6)0.326836 (12)0.01695 (10)
I21.075939 (14)1.33621 (9)0.468614 (15)0.04003 (14)
S10.96539 (4)1.2618 (2)0.30265 (5)0.0163 (2)
S20.98132 (4)1.0369 (3)0.41150 (5)0.0202 (3)
S30.88601 (4)1.0394 (2)0.22343 (5)0.0186 (3)
S40.90284 (4)0.6524 (2)0.37793 (5)0.0196 (3)
S50.84272 (4)0.6130 (2)0.26660 (5)0.0194 (3)
S60.84983 (4)0.2173 (3)0.42068 (5)0.0217 (3)
S70.78627 (4)0.1484 (3)0.31171 (5)0.0200 (3)
S80.80104 (5)−0.1743 (3)0.47356 (5)0.0231 (3)
S90.72837 (4)−0.2411 (3)0.34965 (5)0.0200 (3)
U11U22U33U12U13U23
C10.013 (2)0.020 (3)0.015 (2)−0.0029 (19)0.0032 (18)−0.002 (2)
C20.018 (2)0.023 (3)0.017 (2)−0.004 (2)−0.0002 (19)0.002 (2)
C30.015 (2)0.017 (3)0.012 (2)0.0032 (19)0.0015 (18)−0.0001 (19)
C40.015 (2)0.015 (3)0.017 (2)0.0032 (19)0.0038 (18)0.004 (2)
C50.017 (2)0.016 (3)0.015 (2)0.0061 (19)0.0073 (18)−0.0025 (19)
C60.017 (2)0.015 (3)0.020 (3)−0.0027 (19)0.0026 (19)−0.004 (2)
C70.017 (2)0.020 (3)0.016 (2)0.000 (2)0.0033 (19)−0.003 (2)
C80.018 (2)0.020 (3)0.026 (3)−0.004 (2)0.007 (2)−0.001 (2)
C90.013 (2)0.020 (3)0.027 (3)−0.002 (2)0.0050 (19)−0.004 (2)
C100.047 (4)0.035 (4)0.024 (3)−0.007 (3)0.015 (3)−0.002 (3)
C110.018 (2)0.029 (3)0.026 (3)−0.001 (2)0.005 (2)−0.004 (2)
I10.01587 (16)0.01857 (18)0.01695 (17)−0.00209 (12)0.00491 (12)−0.00065 (13)
I20.0346 (2)0.0579 (3)0.0204 (2)−0.0239 (2)−0.00805 (16)0.01043 (18)
S10.0161 (6)0.0184 (6)0.0143 (6)−0.0014 (5)0.0033 (4)0.0016 (5)
S20.0195 (6)0.0269 (7)0.0133 (6)−0.0053 (5)0.0019 (5)0.0029 (5)
S30.0198 (6)0.0193 (7)0.0160 (6)0.0023 (5)0.0027 (5)0.0014 (5)
S40.0223 (6)0.0212 (7)0.0153 (6)−0.0046 (5)0.0046 (5)0.0002 (5)
S50.0188 (6)0.0194 (7)0.0185 (6)−0.0034 (5)0.0014 (5)−0.0020 (5)
S60.0208 (6)0.0254 (8)0.0182 (6)−0.0065 (5)0.0031 (5)−0.0005 (5)
S70.0200 (6)0.0215 (7)0.0179 (6)−0.0040 (5)0.0033 (5)−0.0012 (5)
S80.0254 (7)0.0233 (7)0.0202 (7)−0.0050 (5)0.0044 (5)0.0014 (5)
S90.0182 (6)0.0207 (7)0.0214 (6)−0.0037 (5)0.0052 (5)−0.0039 (5)
C1—C21.331 (7)C7—S71.752 (5)
C1—S11.758 (5)C7—S61.767 (5)
C1—I12.093 (5)C8—C91.336 (7)
C2—S21.751 (5)C8—S81.755 (5)
C2—I22.074 (5)C8—S61.766 (5)
C3—C41.379 (7)C9—S91.758 (5)
C3—S21.738 (4)C9—S71.766 (5)
C3—S11.739 (5)C10—S81.806 (6)
C4—C51.414 (6)C10—H10A0.9800
C4—S41.769 (5)C10—H10B0.9800
C5—S31.685 (5)C10—H10C0.9800
C5—S51.721 (5)C11—S91.820 (5)
C6—C71.340 (7)C11—H11A0.9800
C6—S51.750 (5)C11—H11B0.9800
C6—S41.758 (5)C11—H11C0.9800
C2—C1—S1117.7 (4)C8—C9—S9126.4 (4)
C2—C1—I1127.1 (4)C8—C9—S7117.3 (4)
S1—C1—I1115.2 (2)S9—C9—S7116.2 (3)
C1—C2—S2116.4 (4)S8—C10—H10A109.5
C1—C2—I2127.5 (4)S8—C10—H10B109.5
S2—C2—I2116.1 (3)H10A—C10—H10B109.5
C4—C3—S2119.2 (4)S8—C10—H10C109.5
C4—C3—S1126.1 (4)H10A—C10—H10C109.5
S2—C3—S1114.7 (3)H10B—C10—H10C109.5
C3—C4—C5125.4 (5)S9—C11—H11A109.5
C3—C4—S4118.4 (4)S9—C11—H11B109.5
C5—C4—S4116.2 (4)H11A—C11—H11B109.5
C4—C5—S3124.2 (4)S9—C11—H11C109.5
C4—C5—S5116.1 (4)H11A—C11—H11C109.5
S3—C5—S5119.8 (3)H11B—C11—H11C109.5
C7—C6—S5124.4 (4)C3—S1—C195.1 (2)
C7—C6—S4121.0 (4)C3—S2—C296.0 (2)
S5—C6—S4114.6 (3)C6—S4—C495.5 (2)
C6—C7—S7125.2 (4)C5—S5—C697.4 (2)
C6—C7—S6120.2 (4)C8—S6—C795.0 (2)
S7—C7—S6114.6 (3)C7—S7—C995.4 (2)
C9—C8—S8124.1 (4)C8—S8—C10101.0 (3)
C9—C8—S6117.5 (4)C9—S9—C1197.8 (2)
S8—C8—S6118.4 (3)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Antiferromagnetic or canted antiferromagnetic orderings of Fe(III) d spins of FeX4- ions in BEDT-TTFVO(S).FeX4 (X = Cl, Br) [BEDT-TTFVO(S) = bis(ethylenedithio)tetrathiafulvalenoquinone(-thioquinone)-1,3-dithiolemethide].

Authors:  Mingxing Wang; Xunwen Xiao; Hideki Fujiwara; Toyonari Sugimoto; Satoru Noguchi; Takekazu Ishida; Takehiko Mori; Hiroko Aruga Katori
Journal:  Inorg Chem       Date:  2007-03-23       Impact factor: 5.165

3.  1:1 complexes of dimethylthio- and ethylenedithio-tetrathiafulvalenothioquinone-1,3-dithiolemethides with CuBr2 as a new type of pi/d molecular system.

Authors:  M Iwamatsu; T Kominami; K Ueda; T Sugimoto; T Adachi; H Fujita; H Yoshino; Y Mizuno; K Murata; M Shiro
Journal:  Inorg Chem       Date:  2000-08-21       Impact factor: 5.165

4.  Ferromagnetic ordering of Fe(III) d spins of FeBr4- ions in (ethylenedithiotetrathiafulvalenothioquinone-ethylenedithio-1,3-dithiolemethide) x FeBr4.

Authors:  Mingxing Wang; Hideki Fujiwara; Toyonari Sugimoto; Satoru Noguchi; Takekazu Ishida
Journal:  Inorg Chem       Date:  2005-03-07       Impact factor: 5.165

  4 in total
  1 in total

1.  2,5-Bis(1,3-dithiol-2-yl-idene)-1,3-dithiol-ane-4-thione.

Authors:  Kazumasa Ueda; Kenta Suzuki; Kei Kunimoto; Kenji Yoza
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-10
  1 in total

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