Literature DB >> 22090942

1-(4-Chloro-benzo-yl)-3-cyclo-hexyl-3-methyl-thio-urea.

Aisha A Al-Abbasi, Bohari M Yamin, Mohammad B Kassim.   

Abstract

In the title compound, C(15)H(19)ClN(2)OS, the dihedral angle between the amide and thio-urea fragments is 58.07 (17)°. The cyclo-hexane group adopts a chair conformation and is twisted relative to the thio-urea fragment, forming a dihedral angle of 87.32 (18)°. In the crystal, N-H⋯S hydrogen bond links the mol-ecules into chains running parallel to the a-axis direction.

Entities:  

Year:  2011        PMID: 22090942      PMCID: PMC3212285          DOI: 10.1107/S1600536811025013

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures and background references, see: Al-abbasi & Kassim (2011 ▶); Nasir et al. (2011 ▶). For further synthetic details, see: Hassan et al. (2008 ▶).

Experimental

Crystal data

C15H19ClN2OS M = 310.83 Triclinic, a = 5.042 (2) Å b = 11.368 (4) Å c = 15.139 (6) Å α = 69.865 (7)° β = 82.698 (8)° γ = 80.702 (8)° V = 801.7 (5) Å3 Z = 2 Mo Kα radiation μ = 0.37 mm−1 T = 298 K 0.52 × 0.23 × 0.03 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.906, T max = 0.989 9192 measured reflections 3149 independent reflections 1935 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.085 wR(F 2) = 0.192 S = 1.10 3149 reflections 182 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811025013/hb5920sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811025013/hb5920Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811025013/hb5920Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H19ClN2OSZ = 2
Mr = 310.83F(000) = 328
Triclinic, P1Dx = 1.288 Mg m3
Hall symbol: -P 1Melting point = 418–420 K
a = 5.042 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 11.368 (4) ÅCell parameters from 1114 reflections
c = 15.139 (6) Åθ = 1.9–26.0°
α = 69.865 (7)°µ = 0.37 mm1
β = 82.698 (8)°T = 298 K
γ = 80.702 (8)°Plate, colourless
V = 801.7 (5) Å30.52 × 0.23 × 0.03 mm
Bruker SMART APEX CCD diffractometer3149 independent reflections
Radiation source: fine-focus sealed tube1935 reflections with I > 2σ(I)
graphiteRint = 0.063
ω scanθmax = 26.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −6→6
Tmin = 0.906, Tmax = 0.989k = −14→14
9192 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.085Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.192H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0826P)2 + 0.0972P] where P = (Fo2 + 2Fc2)/3
3149 reflections(Δ/σ)max < 0.001
182 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.3915 (2)0.34433 (9)0.12184 (8)0.0545 (4)
Cl11.2888 (4)0.63599 (15)−0.45045 (10)0.1074 (6)
N10.7565 (6)0.3373 (3)−0.0182 (2)0.0470 (8)
H10.79960.4111−0.02780.056*
N20.7860 (6)0.1587 (3)0.1141 (2)0.0436 (8)
O10.7203 (6)0.1941 (3)−0.0894 (2)0.0647 (9)
C10.9200 (8)0.3791 (3)−0.1813 (3)0.0453 (10)
C80.6580 (8)0.2720 (3)0.0727 (3)0.0434 (10)
C70.7916 (8)0.2943 (4)−0.0951 (3)0.0496 (10)
C21.1049 (8)0.4556 (4)−0.1799 (3)0.0511 (10)
H21.15130.4549−0.12210.061*
C90.6886 (8)0.0807 (3)0.2086 (3)0.0500 (10)
H90.49770.11150.21790.060*
C31.2217 (9)0.5326 (4)−0.2615 (3)0.0593 (12)
H31.34860.5823−0.25930.071*
C100.8322 (9)0.0976 (4)0.2850 (3)0.0642 (12)
H10A0.81010.18630.27890.077*
H10B1.02330.06990.27720.077*
C60.8558 (9)0.3803 (4)−0.2693 (3)0.0614 (12)
H60.73760.3271−0.27220.074*
C151.0483 (8)0.1113 (4)0.0754 (3)0.0561 (11)
H15A1.02000.06010.03930.084*
H15B1.15720.06140.12620.084*
H15C1.13820.18130.03540.084*
C41.1485 (10)0.5351 (4)−0.3466 (3)0.0668 (13)
C50.9673 (10)0.4596 (5)−0.3505 (3)0.0718 (14)
H50.92010.4623−0.40860.086*
C140.7051 (9)−0.0591 (4)0.2195 (4)0.0708 (14)
H14A0.6045−0.06790.17210.085*
H14B0.8915−0.09300.20980.085*
C120.7376 (12)−0.1166 (6)0.3931 (4)0.108 (2)
H12A0.6573−0.16240.45470.130*
H12B0.9254−0.15180.38860.130*
C130.5919 (11)−0.1324 (5)0.3164 (5)0.100 (2)
H13A0.6101−0.22120.32290.120*
H13B0.4015−0.10310.32400.120*
C110.7191 (12)0.0218 (6)0.3827 (4)0.0969 (18)
H11A0.81910.03060.43030.116*
H11B0.53220.05490.39270.116*
U11U22U33U12U13U23
S10.0603 (7)0.0371 (6)0.0621 (7)0.0054 (5)−0.0001 (5)−0.0182 (5)
Cl10.1343 (14)0.1065 (12)0.0655 (9)−0.0256 (10)0.0032 (9)−0.0077 (8)
N10.065 (2)0.0364 (17)0.045 (2)−0.0057 (15)−0.0051 (17)−0.0215 (15)
N20.0444 (19)0.0371 (17)0.051 (2)0.0010 (14)−0.0094 (16)−0.0180 (15)
O10.090 (2)0.0534 (18)0.065 (2)−0.0119 (16)−0.0157 (17)−0.0333 (16)
C10.049 (2)0.043 (2)0.046 (2)0.0083 (18)−0.0065 (19)−0.0231 (19)
C80.051 (2)0.038 (2)0.050 (2)−0.0032 (18)−0.010 (2)−0.0238 (19)
C70.053 (3)0.043 (2)0.057 (3)0.0087 (19)−0.016 (2)−0.025 (2)
C20.051 (3)0.054 (2)0.055 (3)0.001 (2)−0.006 (2)−0.030 (2)
C90.042 (2)0.039 (2)0.067 (3)−0.0003 (17)−0.009 (2)−0.016 (2)
C30.057 (3)0.056 (3)0.070 (3)−0.003 (2)−0.006 (2)−0.029 (2)
C100.078 (3)0.057 (3)0.054 (3)−0.015 (2)−0.007 (2)−0.010 (2)
C60.074 (3)0.066 (3)0.055 (3)−0.004 (2)−0.015 (2)−0.033 (2)
C150.050 (3)0.056 (2)0.069 (3)0.011 (2)−0.014 (2)−0.033 (2)
C40.073 (3)0.064 (3)0.056 (3)0.002 (3)−0.003 (3)−0.017 (2)
C50.085 (4)0.087 (4)0.047 (3)0.002 (3)−0.018 (3)−0.028 (3)
C140.059 (3)0.037 (2)0.112 (4)−0.002 (2)−0.019 (3)−0.016 (3)
C120.080 (4)0.093 (5)0.103 (5)−0.011 (3)0.005 (4)0.024 (4)
C130.062 (3)0.045 (3)0.163 (6)−0.013 (2)−0.003 (4)0.003 (3)
C110.106 (5)0.104 (5)0.061 (3)−0.018 (4)−0.004 (3)0.000 (3)
S1—C81.687 (4)C10—H10A0.9700
Cl1—C41.739 (5)C10—H10B0.9700
N1—C81.391 (5)C6—C51.365 (6)
N1—C71.391 (5)C6—H60.9300
N1—H10.8600C15—H15A0.9600
N2—C81.321 (4)C15—H15B0.9600
N2—C91.470 (5)C15—H15C0.9600
N2—C151.474 (5)C4—C51.370 (6)
O1—C71.221 (4)C5—H50.9300
C1—C21.381 (5)C14—C131.507 (7)
C1—C61.406 (5)C14—H14A0.9700
C1—C71.474 (5)C14—H14B0.9700
C2—C31.370 (6)C12—C111.515 (8)
C2—H20.9300C12—C131.524 (8)
C9—C101.520 (6)C12—H12A0.9700
C9—C141.530 (5)C12—H12B0.9700
C9—H90.9800C13—H13A0.9700
C3—C41.375 (6)C13—H13B0.9700
C3—H30.9300C11—H11A0.9700
C10—C111.524 (6)C11—H11B0.9700
C8—N1—C7126.1 (3)N2—C15—H15A109.5
C8—N1—H1117.0N2—C15—H15B109.5
C7—N1—H1117.0H15A—C15—H15B109.5
C8—N2—C9120.4 (3)N2—C15—H15C109.5
C8—N2—C15122.6 (3)H15A—C15—H15C109.5
C9—N2—C15116.5 (3)H15B—C15—H15C109.5
C2—C1—C6118.3 (4)C5—C4—C3120.9 (4)
C2—C1—C7123.2 (4)C5—C4—Cl1119.9 (4)
C6—C1—C7118.5 (4)C3—C4—Cl1119.2 (4)
N2—C8—N1116.8 (3)C6—C5—C4120.3 (4)
N2—C8—S1125.5 (3)C6—C5—H5119.9
N1—C8—S1117.8 (3)C4—C5—H5119.9
O1—C7—N1121.5 (4)C13—C14—C9110.6 (4)
O1—C7—C1124.2 (4)C13—C14—H14A109.5
N1—C7—C1114.4 (3)C9—C14—H14A109.5
C3—C2—C1121.6 (4)C13—C14—H14B109.5
C3—C2—H2119.2C9—C14—H14B109.5
C1—C2—H2119.2H14A—C14—H14B108.1
N2—C9—C10111.3 (3)C11—C12—C13110.4 (5)
N2—C9—C14113.4 (4)C11—C12—H12A109.6
C10—C9—C14110.9 (4)C13—C12—H12A109.6
N2—C9—H9107.0C11—C12—H12B109.6
C10—C9—H9107.0C13—C12—H12B109.6
C14—C9—H9107.0H12A—C12—H12B108.1
C2—C3—C4119.0 (4)C14—C13—C12111.1 (4)
C2—C3—H3120.5C14—C13—H13A109.4
C4—C3—H3120.5C12—C13—H13A109.4
C9—C10—C11110.8 (4)C14—C13—H13B109.4
C9—C10—H10A109.5C12—C13—H13B109.4
C11—C10—H10A109.5H13A—C13—H13B108.0
C9—C10—H10B109.5C12—C11—C10111.0 (5)
C11—C10—H10B109.5C12—C11—H11A109.4
H10A—C10—H10B108.1C10—C11—H11A109.4
C5—C6—C1120.0 (4)C12—C11—H11B109.4
C5—C6—H6120.0C10—C11—H11B109.4
C1—C6—H6120.0H11A—C11—H11B108.0
D—H···AD—HH···AD···AD—H···A
N1—H1···S1i0.862.733.411 (4)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯S1i0.862.733.411 (4)137

Symmetry code: (i) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Bromo-N-(dibenzyl-carbamothioyl)benzamide.

Authors:  Mohd Faizal Md Nasir; Ibrahim N Hassan; Wan Ramli Wan Daud; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

3.  Ethyl 2-(3-benzoyl-thio-ureido)acetate.

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4.  1-Benzoyl-3-ethyl-3-phenyl-thio-urea.

Authors:  Aisha A Al-Abbasi; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-12

5.  Structure validation in chemical crystallography.

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1.  1,1-Diethyl-3-(4-meth-oxy-benzo-yl)thio-urea.

Authors:  Aisha A Al-Abbasi; Mohamed Ibrahim Mohamed Tahir; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-25

2.  N-(Pyrrolidin-1-ylcarbothio-yl)benzamide.

Authors:  Aisha A Al-Abbasi; Mohamed Ibrahim Mohamed Tahir; Mohammad B Kassim
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  2 in total

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