Literature DB >> 22251873

Dosage compensation in Drosophila melanogaster: epigenetic fine-tuning of chromosome-wide transcription.

Thomas Conrad1, Asifa Akhtar.   

Abstract

Dosage compensation is an epigenetic mechanism that normalizes gene expression from unequal copy numbers of sex chromosomes. Different organisms have evolved alternative molecular solutions to this task. In Drosophila melanogaster, transcription of the single male X chromosome is upregulated by twofold in a process orchestrated by the dosage compensation complex. Despite this conceptual simplicity, dosage compensation involves multiple coordinated steps to recognize and activate the entire X chromosome. We are only beginning to understand the intriguing interplay between multiple levels of local and long-range chromatin regulation required for the fine-tuned transcriptional activation of a heterogeneous gene population. This Review highlights the known facts and open questions of dosage compensation in D. melanogaster.

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Year:  2012        PMID: 22251873     DOI: 10.1038/nrg3124

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  151 in total

1.  Functional integration of the histone acetyltransferase MOF into the dosage compensation complex.

Authors:  Violette Morales; Tobias Straub; Martin F Neumann; Gabrielle Mengus; Asifa Akhtar; Peter B Becker
Journal:  EMBO J       Date:  2004-05-13       Impact factor: 11.598

2.  Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.

Authors:  Michiel Vermeulen; Klaas W Mulder; Sergei Denissov; W W M Pim Pijnappel; Frederik M A van Schaik; Radhika A Varier; Marijke P A Baltissen; Henk G Stunnenberg; Matthias Mann; H Th Marc Timmers
Journal:  Cell       Date:  2007-09-20       Impact factor: 41.582

3.  30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction.

Authors:  Philip J J Robinson; Woojin An; Andrew Routh; Fabrizio Martino; Lynda Chapman; Robert G Roeder; Daniela Rhodes
Journal:  J Mol Biol       Date:  2008-04-29       Impact factor: 5.469

Review 4.  Chromosome crosstalk in three dimensions.

Authors:  Anita Göndör; Rolf Ohlsson
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

5.  Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila.

Authors:  Jop Kind; Juan M Vaquerizas; Philipp Gebhardt; Marc Gentzel; Nicholas M Luscombe; Paul Bertone; Asifa Akhtar
Journal:  Cell       Date:  2008-05-30       Impact factor: 41.582

6.  Histone H4 lysine 16 hypoacetylation is associated with defective DNA repair and premature senescence in Zmpste24-deficient mice.

Authors:  Vaidehi Krishnan; Maggie Zi Ying Chow; Zimei Wang; Le Zhang; Baohua Liu; Xinguang Liu; Zhongjun Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-11       Impact factor: 11.205

7.  Genome-wide HP1 binding in Drosophila: developmental plasticity and genomic targeting signals.

Authors:  Elzo de Wit; Frauke Greil; Bas van Steensel
Journal:  Genome Res       Date:  2005-08-18       Impact factor: 9.043

8.  Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex.

Authors:  Gregor D Gilfillan; Tobias Straub; Elzo de Wit; Frauke Greil; Rosemarie Lamm; Bas van Steensel; Peter B Becker
Journal:  Genes Dev       Date:  2006-03-17       Impact factor: 11.361

9.  Transcription rate of noncoding roX1 RNA controls local spreading of the Drosophila MSL chromatin remodeling complex.

Authors:  Richard L Kelley; Ok-Kyung Lee; Yoon-Kyung Shim
Journal:  Mech Dev       Date:  2008-08-28       Impact factor: 1.882

10.  Paucity of genes on the Drosophila X chromosome showing male-biased expression.

Authors:  Michael Parisi; Rachel Nuttall; Daniel Naiman; Gerard Bouffard; James Malley; Justen Andrews; Scott Eastman; Brian Oliver
Journal:  Science       Date:  2003-01-02       Impact factor: 47.728

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  128 in total

Review 1.  Unique features of long non-coding RNA biogenesis and function.

Authors:  Jeffrey J Quinn; Howard Y Chang
Journal:  Nat Rev Genet       Date:  2016-01       Impact factor: 53.242

2.  SUMOylation is essential for sex-specific assembly and function of the Caenorhabditis elegans dosage compensation complex on X chromosomes.

Authors:  Rebecca R Pferdehirt; Barbara J Meyer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

3.  Differential effect of aneuploidy on the X chromosome and genes with sex-biased expression in Drosophila.

Authors:  Lin Sun; Adam F Johnson; Jilong Li; Aaron S Lambdin; Jianlin Cheng; James A Birchler
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-23       Impact factor: 11.205

4.  Linking dosage compensation and X chromosome nuclear organization in C. elegans.

Authors:  Rahul Sharma; Peter Meister
Journal:  Nucleus       Date:  2015-06-09       Impact factor: 4.197

5.  Genomics of sex determination in Drosophila.

Authors:  Emily Clough; Brian Oliver
Journal:  Brief Funct Genomics       Date:  2012-09       Impact factor: 4.241

6.  Male-specific lethal complex in Drosophila counteracts histone acetylation and does not mediate dosage compensation.

Authors:  Lin Sun; Harvey R Fernandez; Ryan C Donohue; Jilong Li; Jianlin Cheng; James A Birchler
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

7.  Dosage compensation and inverse effects in triple X metafemales of Drosophila.

Authors:  Lin Sun; Adam F Johnson; Ryan C Donohue; Jilong Li; Jianlin Cheng; James A Birchler
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-15       Impact factor: 11.205

8.  Primary Sex Determination in Drosophila melanogaster Does Not Rely on the Male-Specific Lethal Complex.

Authors:  James W Erickson
Journal:  Genetics       Date:  2015-11-27       Impact factor: 4.562

9.  Mammalian X upregulation is associated with enhanced transcription initiation, RNA half-life, and MOF-mediated H4K16 acetylation.

Authors:  Xinxian Deng; Joel B Berletch; Wenxiu Ma; Di Kim Nguyen; Joseph B Hiatt; William S Noble; Jay Shendure; Christine M Disteche
Journal:  Dev Cell       Date:  2013-03-21       Impact factor: 12.270

Review 10.  X marks the spot: does it matter that O-GlcNAc transferase is an X-linked gene?

Authors:  Stéphanie Olivier-Van Stichelen; Lara K Abramowitz; John A Hanover
Journal:  Biochem Biophys Res Commun       Date:  2014-06-21       Impact factor: 3.575

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